Wall clock time and date at job start Wed Apr 1 2020 03:50:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30835 * 125.89856 * 2 1 4 4 N 1.40085 * 108.20869 * 180.02562 * 3 2 1 5 5 H 0.96994 * 126.04020 * 180.02562 * 4 3 2 6 6 C 1.34952 * 107.92285 * 0.02562 * 4 3 2 7 7 C 1.50694 * 126.12744 * 180.26502 * 6 4 3 8 8 C 1.35317 * 107.74490 * 0.02562 * 6 4 3 9 9 C 1.50705 * 126.03676 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47188 * 89.99975 * 9 8 6 11 11 H 1.09002 * 109.47059 * 54.99312 * 10 9 8 12 12 C 1.53004 * 109.46826 * 294.99830 * 10 9 8 13 13 C 1.50696 * 109.46999 * 174.99933 * 10 9 8 14 14 O 1.21275 * 120.00417 * 359.97438 * 13 10 9 15 15 N 1.34785 * 119.99981 * 179.97438 * 13 10 9 16 16 C 1.46501 * 120.00011 * 179.97438 * 15 13 10 17 17 H 1.08995 * 110.55747 * 36.44378 * 16 15 13 18 18 C 1.54848 * 110.62601 * 273.54538 * 16 15 13 19 19 C 1.55846 * 103.44637 * 241.51177 * 18 16 15 20 20 H 1.08994 * 115.56211 * 158.81271 * 19 18 16 21 21 C 1.55838 * 105.06380 * 287.42361 * 19 18 16 22 22 C 1.56689 * 102.59745 * 72.29945 * 21 19 18 23 23 C 1.55841 * 103.59973 * 359.66584 * 22 21 19 24 24 H 1.09002 * 116.12140 * 159.37696 * 23 22 21 25 25 N 1.50234 * 101.05044 * 33.16740 * 23 22 21 26 26 C 1.36938 * 130.83620 * 126.05081 * 25 23 22 27 27 H 1.07997 * 120.00191 * 171.54989 * 26 25 23 28 28 C 1.38808 * 120.00261 * 351.55385 * 26 25 23 29 29 N 1.31619 * 120.00133 * 157.94504 * 28 26 25 30 30 Si 1.86799 * 119.99885 * 337.94317 * 28 26 25 31 31 H 1.48501 * 109.47202 * 93.14304 * 30 28 26 32 32 H 1.48507 * 109.47337 * 213.14136 * 30 28 26 33 33 H 1.48498 * 109.47073 * 333.14124 * 30 28 26 34 34 H 1.09001 * 109.46969 * 269.95380 * 1 2 3 35 35 H 1.08997 * 109.46907 * 29.95808 * 1 2 3 36 36 H 1.09001 * 109.46589 * 149.95585 * 1 2 3 37 37 H 1.08996 * 109.47302 * 269.69047 * 7 6 4 38 38 H 1.09003 * 109.47294 * 29.68853 * 7 6 4 39 39 H 1.09002 * 109.47139 * 149.68462 * 7 6 4 40 40 H 1.09003 * 109.46596 * 209.99501 * 9 8 6 41 41 H 1.09000 * 109.47009 * 329.99570 * 9 8 6 42 42 H 1.09009 * 109.46968 * 180.02562 * 12 10 9 43 43 H 1.08997 * 109.47312 * 299.99516 * 12 10 9 44 44 H 1.08995 * 109.47357 * 60.00169 * 12 10 9 45 45 H 0.97002 * 119.99642 * 359.97438 * 15 13 10 46 46 H 1.09003 * 110.62632 * 0.02562 * 18 16 15 47 47 H 1.08996 * 110.62756 * 123.01761 * 18 16 15 48 48 H 1.08996 * 110.62838 * 190.31210 * 21 19 18 49 49 H 1.09003 * 110.62835 * 313.33599 * 21 19 18 50 50 H 1.08998 * 110.35397 * 241.21792 * 22 21 19 51 51 H 1.08999 * 110.88444 * 118.36888 * 22 21 19 52 52 H 0.97006 * 119.99785 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6342 -0.0006 5 1 4.3908 1.2080 -0.0004 6 6 3.6143 -0.7153 -0.0015 7 6 4.8350 -1.5989 0.0032 8 6 2.3272 -1.1330 -0.0021 9 6 1.8600 -2.5658 -0.0037 10 6 1.7018 -3.0523 1.4382 11 1 1.0362 -2.3787 1.9780 12 6 3.0702 -3.0735 2.1223 13 6 1.1185 -4.4418 1.4384 14 8 0.8548 -4.9889 0.3887 15 7 0.8898 -5.0766 2.6052 16 6 0.3222 -6.4272 2.6053 17 1 0.7097 -7.0053 1.7666 18 6 -1.2245 -6.3688 2.5594 19 6 -1.6529 -7.0610 3.8883 20 1 -2.6566 -6.8229 4.2403 21 6 -1.3591 -8.5757 3.6691 22 6 0.2059 -8.6313 3.7223 23 6 0.6177 -7.1466 3.9558 24 1 1.6138 -6.9838 4.3673 25 7 -0.5269 -6.6594 4.7982 26 6 -0.5398 -6.0396 6.0192 27 1 -1.4626 -5.6382 6.4113 28 6 0.6330 -5.9273 6.7530 29 7 0.7448 -4.9965 7.6768 30 14 2.0528 -7.0973 6.4295 31 1 2.9822 -6.4876 5.4447 32 1 2.7782 -7.3585 7.6987 33 1 1.5269 -8.3761 5.8878 34 1 -0.3633 -0.0008 1.0277 35 1 -0.3633 0.8903 -0.5132 36 1 -0.3632 -0.8896 -0.5145 37 1 5.1307 -1.8157 -1.0232 38 1 5.6506 -1.0890 0.5162 39 1 4.6070 -2.5309 0.5203 40 1 0.9012 -2.6347 -0.5177 41 1 2.5935 -3.1865 -0.5183 42 1 2.9576 -3.4206 3.1495 43 1 3.7358 -3.7472 1.5826 44 1 3.4921 -2.0686 2.1221 45 1 1.1011 -4.6391 3.4448 46 1 -1.5693 -5.3350 2.5360 47 1 -1.6042 -6.9204 1.6993 48 1 -1.7918 -9.1711 4.4729 49 1 -1.7367 -8.9039 2.7006 50 1 0.6047 -8.9961 2.7757 51 1 0.5446 -9.2581 4.5472 52 1 1.5644 -4.9183 8.1899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111422414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:14 Heat of formation + Delta-G solvation = 72.907039 kcal Electronic energy + Delta-G solvation = -31889.314790 eV Core-core repulsion = 27891.348159 eV Total energy + Delta-G solvation = -3997.966631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.56079 -40.05011 -38.73924 -35.10356 -33.80193 -33.57250 -32.61103 -31.20482 -29.66176 -29.23933 -28.80367 -28.00367 -27.73282 -25.67291 -24.10010 -23.48435 -21.36606 -20.29248 -20.24493 -19.66234 -19.06323 -18.91050 -17.38737 -17.10587 -16.87987 -16.21560 -15.51836 -15.26502 -14.86909 -14.35553 -14.17286 -13.84990 -13.78741 -13.56326 -13.51542 -13.29035 -13.06684 -12.90534 -12.67847 -12.56538 -12.50688 -12.31608 -12.28146 -12.01434 -11.82137 -11.49378 -11.44359 -11.17062 -11.09630 -11.05435 -10.88592 -10.86223 -10.50429 -10.37367 -10.27988 -9.89238 -9.68223 -9.35618 -9.32891 -9.24586 -8.92876 -8.50093 -8.41573 -7.30262 -5.98558 -3.23602 1.72325 2.59059 2.72441 3.02158 3.21253 3.40357 3.42841 3.66546 4.45888 4.48363 4.57577 4.62207 4.82114 4.92352 5.02400 5.05067 5.12780 5.20881 5.22000 5.29773 5.38945 5.43180 5.50654 5.54639 5.56116 5.61023 5.66472 5.68148 5.80647 5.81400 5.83377 5.89346 5.92559 5.94277 5.98681 6.04570 6.12346 6.19855 6.23130 6.23956 6.32715 6.42230 6.49371 6.61335 6.66462 6.76252 6.85632 7.07791 7.15953 7.32551 7.59485 8.02854 8.24926 8.65143 8.66300 9.58373 10.19096 11.17678 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013333 B = 0.003148 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.557478 B = 8892.078437 C = 9543.157064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.086 3.914 3 N -0.299 5.299 4 N -0.480 5.480 5 H 0.435 0.565 6 C 0.091 3.909 7 C -0.107 4.107 8 C -0.227 4.227 9 C -0.018 4.018 10 C -0.105 4.105 11 H 0.097 0.903 12 C -0.148 4.148 13 C 0.516 3.484 14 O -0.555 6.555 15 N -0.708 5.708 16 C 0.133 3.867 17 H 0.082 0.918 18 C -0.135 4.135 19 C 0.140 3.860 20 H 0.094 0.906 21 C -0.133 4.133 22 C -0.134 4.134 23 C 0.115 3.885 24 H 0.094 0.906 25 N -0.605 5.605 26 C -0.222 4.222 27 H 0.098 0.902 28 C 0.016 3.984 29 N -0.911 5.911 30 Si 0.866 3.134 31 H -0.290 1.290 32 H -0.305 1.305 33 H -0.260 1.260 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.070 0.930 39 H 0.097 0.903 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.063 0.937 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.407 0.593 46 H 0.064 0.936 47 H 0.063 0.937 48 H 0.059 0.941 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.068 0.932 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 4.871 -15.622 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 N -0.123 5.123 4 N -0.188 5.188 5 H 0.279 0.721 6 C -0.037 4.037 7 C -0.165 4.165 8 C -0.238 4.238 9 C -0.057 4.057 10 C -0.127 4.127 11 H 0.115 0.885 12 C -0.205 4.205 13 C 0.302 3.698 14 O -0.433 6.433 15 N -0.357 5.357 16 C 0.026 3.974 17 H 0.100 0.900 18 C -0.176 4.176 19 C 0.033 3.967 20 H 0.112 0.888 21 C -0.173 4.173 22 C -0.173 4.173 23 C 0.008 3.992 24 H 0.112 0.888 25 N -0.327 5.327 26 C -0.349 4.349 27 H 0.116 0.884 28 C -0.182 4.182 29 N -0.556 5.556 30 Si 0.698 3.302 31 H -0.219 1.219 32 H -0.233 1.233 33 H -0.186 1.186 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.115 0.885 40 H 0.097 0.903 41 H 0.091 0.909 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.086 0.914 45 H 0.242 0.758 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.076 0.924 51 H 0.086 0.914 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.914 5.909 -16.005 17.755 hybrid contribution 1.550 -0.891 0.550 1.871 sum 6.464 5.018 -15.456 17.488 Atomic orbital electron populations 1.20234 0.86714 1.03331 1.03342 1.22253 0.96977 0.90207 0.98596 1.77273 0.86449 1.22366 1.26180 1.46127 1.07271 1.04830 1.60537 0.72107 1.20862 0.96975 0.84792 1.01055 1.20758 0.92842 0.99274 1.03613 1.19719 0.91071 0.96325 1.16731 1.19635 1.02246 0.89362 0.94415 1.21286 0.98561 0.94188 0.98646 0.88538 1.21964 0.95417 1.02421 1.00722 1.20579 0.77817 0.87640 0.83788 1.90637 1.53295 1.67985 1.31425 1.46078 1.63443 1.17457 1.08764 1.22469 0.93654 0.82656 0.98619 0.89974 1.23345 0.95201 1.01104 0.97916 1.22939 0.92708 0.91801 0.89293 0.88784 1.23297 0.95436 0.98441 1.00083 1.23348 0.96279 0.97190 1.00509 1.23359 0.93501 0.92737 0.89632 0.88830 1.46888 0.99563 1.68385 1.17885 1.18663 0.97079 1.27420 0.91706 0.88437 1.24696 0.96936 0.98769 0.97755 1.69831 1.27472 1.31695 1.26610 0.87195 0.83009 0.84232 0.75732 1.21938 1.23309 1.18566 0.90209 0.91018 0.90136 0.90224 0.91129 0.88469 0.90318 0.90939 0.91813 0.92159 0.91387 0.75763 0.91684 0.91876 0.92178 0.92155 0.92359 0.91369 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.26 36.01 0.37 -0.41 16 2 C 0.09 1.06 7.22 -82.41 -0.59 0.47 16 3 N -0.30 -3.86 12.70 33.67 0.43 -3.44 16 4 N -0.48 -4.90 7.36 33.48 0.25 -4.66 16 5 H 0.44 3.06 8.96 -182.61 -1.64 1.42 16 6 C 0.09 0.93 6.27 -82.26 -0.52 0.41 16 7 C -0.11 -0.77 9.47 36.00 0.34 -0.43 16 8 C -0.23 -2.66 4.82 -105.05 -0.51 -3.17 16 9 C -0.02 -0.21 4.00 -27.88 -0.11 -0.32 16 10 C -0.11 -1.36 2.71 -91.77 -0.25 -1.61 16 11 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 12 C -0.15 -1.74 7.48 37.16 0.28 -1.47 16 13 C 0.52 8.25 7.15 -10.98 -0.08 8.17 16 14 O -0.55 -10.18 15.64 5.56 0.09 -10.09 16 15 N -0.71 -12.16 4.99 -51.40 -0.26 -12.42 16 16 C 0.13 2.36 2.73 -65.44 -0.18 2.18 16 17 H 0.08 1.45 7.36 -51.93 -0.38 1.06 16 18 C -0.14 -2.30 6.22 -24.24 -0.15 -2.45 16 19 C 0.14 2.53 5.43 -62.81 -0.34 2.19 16 20 H 0.09 1.64 8.14 -51.93 -0.42 1.22 16 21 C -0.13 -2.16 6.58 -23.23 -0.15 -2.31 16 22 C -0.13 -2.34 6.26 -23.22 -0.15 -2.49 16 23 C 0.11 2.28 3.14 -62.81 -0.20 2.08 16 24 H 0.09 2.02 3.47 -51.93 -0.18 1.84 16 25 N -0.60 -13.28 2.85 -145.83 -0.42 -13.70 16 26 C -0.22 -5.84 10.94 -15.06 -0.16 -6.00 16 27 H 0.10 2.75 8.06 -52.49 -0.42 2.33 16 28 C 0.02 0.44 5.49 -17.43 -0.10 0.34 16 29 N -0.91 -26.76 13.97 55.49 0.78 -25.98 16 30 Si 0.87 20.91 24.62 -169.99 -4.19 16.73 16 31 H -0.29 -6.80 6.76 56.52 0.38 -6.42 16 32 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 33 H -0.26 -5.99 4.83 56.52 0.27 -5.72 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.74 7.25 -51.93 -0.38 0.37 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.10 0.75 4.52 -51.93 -0.23 0.52 16 40 H 0.08 1.00 7.07 -51.93 -0.37 0.63 16 41 H 0.07 0.86 7.78 -51.93 -0.40 0.46 16 42 H 0.06 0.82 7.56 -51.92 -0.39 0.43 16 43 H 0.06 0.66 6.97 -51.93 -0.36 0.29 16 44 H 0.07 0.74 5.78 -51.93 -0.30 0.44 16 45 H 0.41 7.35 8.04 -40.82 -0.33 7.03 16 46 H 0.06 1.16 7.98 -51.93 -0.41 0.74 16 47 H 0.06 0.97 7.80 -51.93 -0.40 0.56 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.06 0.83 7.81 -51.93 -0.41 0.43 16 50 H 0.06 0.88 7.82 -51.93 -0.41 0.48 16 51 H 0.07 1.27 6.58 -51.93 -0.34 0.93 16 52 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 393.10 15.07 5.92 5.92 Total: -1.00 -32.14 393.10 -9.50 -41.63 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -9.60 Total: 10.80 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -2.49 Total: -4.81 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.78 Total: -60.19 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.19 Total: 16.73 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.14 -9.50 -41.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111422414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.541 kcal (2) G-P(sol) polarization free energy of solvation -32.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds