Wall clock time and date at job start Wed Apr 1 2020 03:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30835 * 125.89856 * 2 1 4 4 N 1.40085 * 108.20869 * 180.02562 * 3 2 1 5 5 H 0.96994 * 126.04020 * 180.02562 * 4 3 2 6 6 C 1.34952 * 107.92285 * 0.02562 * 4 3 2 7 7 C 1.50694 * 126.12744 * 180.26502 * 6 4 3 8 8 C 1.35317 * 107.74490 * 0.02562 * 6 4 3 9 9 C 1.50705 * 126.03676 * 179.97438 * 8 6 4 10 10 C 1.53000 * 109.47188 * 89.99975 * 9 8 6 11 11 H 1.09002 * 109.47059 * 54.99312 * 10 9 8 12 12 C 1.53004 * 109.46826 * 294.99830 * 10 9 8 13 13 C 1.50696 * 109.46999 * 174.99933 * 10 9 8 14 14 O 1.21275 * 120.00417 * 359.97438 * 13 10 9 15 15 N 1.34785 * 119.99981 * 179.97438 * 13 10 9 16 16 C 1.46501 * 120.00011 * 179.97438 * 15 13 10 17 17 H 1.08995 * 110.55747 * 36.44378 * 16 15 13 18 18 C 1.54848 * 110.62601 * 273.54538 * 16 15 13 19 19 C 1.55846 * 103.44637 * 241.51177 * 18 16 15 20 20 H 1.08994 * 115.56211 * 158.81271 * 19 18 16 21 21 C 1.55838 * 105.06380 * 287.42361 * 19 18 16 22 22 C 1.56689 * 102.59745 * 72.29945 * 21 19 18 23 23 C 1.55841 * 103.59973 * 359.66584 * 22 21 19 24 24 H 1.09002 * 116.12140 * 159.37696 * 23 22 21 25 25 N 1.50234 * 101.05044 * 33.16740 * 23 22 21 26 26 C 1.36938 * 130.83620 * 126.05081 * 25 23 22 27 27 H 1.07997 * 120.00191 * 171.54989 * 26 25 23 28 28 C 1.38808 * 120.00261 * 351.55385 * 26 25 23 29 29 N 1.31619 * 120.00133 * 157.94504 * 28 26 25 30 30 Si 1.86799 * 119.99885 * 337.94317 * 28 26 25 31 31 H 1.48501 * 109.47202 * 93.14304 * 30 28 26 32 32 H 1.48507 * 109.47337 * 213.14136 * 30 28 26 33 33 H 1.48498 * 109.47073 * 333.14124 * 30 28 26 34 34 H 1.09001 * 109.46969 * 269.95380 * 1 2 3 35 35 H 1.08997 * 109.46907 * 29.95808 * 1 2 3 36 36 H 1.09001 * 109.46589 * 149.95585 * 1 2 3 37 37 H 1.08996 * 109.47302 * 269.69047 * 7 6 4 38 38 H 1.09003 * 109.47294 * 29.68853 * 7 6 4 39 39 H 1.09002 * 109.47139 * 149.68462 * 7 6 4 40 40 H 1.09003 * 109.46596 * 209.99501 * 9 8 6 41 41 H 1.09000 * 109.47009 * 329.99570 * 9 8 6 42 42 H 1.09009 * 109.46968 * 180.02562 * 12 10 9 43 43 H 1.08997 * 109.47312 * 299.99516 * 12 10 9 44 44 H 1.08995 * 109.47357 * 60.00169 * 12 10 9 45 45 H 0.97002 * 119.99642 * 359.97438 * 15 13 10 46 46 H 1.09003 * 110.62632 * 0.02562 * 18 16 15 47 47 H 1.08996 * 110.62756 * 123.01761 * 18 16 15 48 48 H 1.08996 * 110.62838 * 190.31210 * 21 19 18 49 49 H 1.09003 * 110.62835 * 313.33599 * 21 19 18 50 50 H 1.08998 * 110.35397 * 241.21792 * 22 21 19 51 51 H 1.08999 * 110.88444 * 118.36888 * 22 21 19 52 52 H 0.97006 * 119.99785 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6342 -0.0006 5 1 4.3908 1.2080 -0.0004 6 6 3.6143 -0.7153 -0.0015 7 6 4.8350 -1.5989 0.0032 8 6 2.3272 -1.1330 -0.0021 9 6 1.8600 -2.5658 -0.0037 10 6 1.7018 -3.0523 1.4382 11 1 1.0362 -2.3787 1.9780 12 6 3.0702 -3.0735 2.1223 13 6 1.1185 -4.4418 1.4384 14 8 0.8548 -4.9889 0.3887 15 7 0.8898 -5.0766 2.6052 16 6 0.3222 -6.4272 2.6053 17 1 0.7097 -7.0053 1.7666 18 6 -1.2245 -6.3688 2.5594 19 6 -1.6529 -7.0610 3.8883 20 1 -2.6566 -6.8229 4.2403 21 6 -1.3591 -8.5757 3.6691 22 6 0.2059 -8.6313 3.7223 23 6 0.6177 -7.1466 3.9558 24 1 1.6138 -6.9838 4.3673 25 7 -0.5269 -6.6594 4.7982 26 6 -0.5398 -6.0396 6.0192 27 1 -1.4626 -5.6382 6.4113 28 6 0.6330 -5.9273 6.7530 29 7 0.7448 -4.9965 7.6768 30 14 2.0528 -7.0973 6.4295 31 1 2.9822 -6.4876 5.4447 32 1 2.7782 -7.3585 7.6987 33 1 1.5269 -8.3761 5.8878 34 1 -0.3633 -0.0008 1.0277 35 1 -0.3633 0.8903 -0.5132 36 1 -0.3632 -0.8896 -0.5145 37 1 5.1307 -1.8157 -1.0232 38 1 5.6506 -1.0890 0.5162 39 1 4.6070 -2.5309 0.5203 40 1 0.9012 -2.6347 -0.5177 41 1 2.5935 -3.1865 -0.5183 42 1 2.9576 -3.4206 3.1495 43 1 3.7358 -3.7472 1.5826 44 1 3.4921 -2.0686 2.1221 45 1 1.1011 -4.6391 3.4448 46 1 -1.5693 -5.3350 2.5360 47 1 -1.6042 -6.9204 1.6993 48 1 -1.7918 -9.1711 4.4729 49 1 -1.7367 -8.9039 2.7006 50 1 0.6047 -8.9961 2.7757 51 1 0.5446 -9.2581 4.5472 52 1 1.5644 -4.9183 8.1899 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111422414.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:50:13 Heat of formation + Delta-G solvation = 51.761664 kcal Electronic energy + Delta-G solvation = -31890.231723 eV Core-core repulsion = 27891.348159 eV Total energy + Delta-G solvation = -3998.883564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.41338 -41.45039 -40.09920 -36.14650 -35.22379 -34.54235 -34.36828 -32.10694 -31.45672 -30.64974 -29.78850 -29.21276 -28.55956 -26.53416 -25.91544 -24.66059 -22.64306 -21.91172 -21.10755 -20.86956 -20.43196 -19.96180 -18.91632 -18.33344 -18.13009 -17.58959 -16.90025 -16.32282 -16.13412 -15.69271 -15.35085 -15.25454 -15.15106 -14.81157 -14.62988 -14.35333 -14.24755 -13.91035 -13.84820 -13.80336 -13.46696 -13.25840 -13.22996 -13.12582 -12.94585 -12.85661 -12.81742 -12.78330 -12.66036 -12.35539 -12.09565 -11.94243 -11.83800 -11.80464 -11.47519 -11.38589 -11.22452 -11.08966 -10.86701 -10.57032 -10.18350 -9.91570 -9.28398 -9.17663 -8.08495 -5.28254 0.90276 1.27629 1.43474 1.50046 1.69504 1.73992 1.98921 2.38947 2.45598 2.97691 3.21558 3.67491 3.75764 3.80375 3.83787 3.87714 4.02116 4.05498 4.10998 4.22337 4.29206 4.34424 4.42560 4.46642 4.53141 4.56473 4.64544 4.64983 4.68469 4.74765 4.74887 4.76601 4.83432 4.86576 4.90670 5.02519 5.09256 5.10108 5.15516 5.17495 5.23437 5.26969 5.28791 5.38104 5.40497 5.44716 5.60299 5.71768 5.76388 6.16638 6.46076 6.63856 6.68796 6.75437 7.32407 7.53777 8.27372 9.11560 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013333 B = 0.003148 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.557478 B = 8892.078437 C = 9543.157064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.073 3.927 3 N -0.332 5.332 4 N -0.473 5.473 5 H 0.448 0.552 6 C 0.103 3.897 7 C -0.107 4.107 8 C -0.249 4.249 9 C -0.005 4.005 10 C -0.098 4.098 11 H 0.093 0.907 12 C -0.142 4.142 13 C 0.519 3.481 14 O -0.575 6.575 15 N -0.714 5.714 16 C 0.137 3.863 17 H 0.093 0.907 18 C -0.125 4.125 19 C 0.132 3.868 20 H 0.095 0.905 21 C -0.121 4.121 22 C -0.132 4.132 23 C 0.105 3.895 24 H 0.077 0.923 25 N -0.624 5.624 26 C -0.201 4.201 27 H 0.065 0.935 28 C -0.040 4.040 29 N -0.962 5.962 30 Si 0.924 3.076 31 H -0.281 1.281 32 H -0.324 1.324 33 H -0.241 1.241 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.078 0.922 45 H 0.401 0.599 46 H 0.051 0.949 47 H 0.089 0.911 48 H 0.057 0.943 49 H 0.095 0.905 50 H 0.089 0.911 51 H 0.055 0.945 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.984 3.482 -18.167 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.093 4.093 3 N -0.156 5.156 4 N -0.183 5.183 5 H 0.294 0.706 6 C -0.027 4.027 7 C -0.165 4.165 8 C -0.260 4.260 9 C -0.044 4.044 10 C -0.120 4.120 11 H 0.111 0.889 12 C -0.200 4.200 13 C 0.307 3.693 14 O -0.455 6.455 15 N -0.363 5.363 16 C 0.031 3.969 17 H 0.111 0.889 18 C -0.165 4.165 19 C 0.027 3.973 20 H 0.113 0.887 21 C -0.160 4.160 22 C -0.171 4.171 23 C -0.001 4.001 24 H 0.094 0.906 25 N -0.348 5.348 26 C -0.329 4.329 27 H 0.082 0.918 28 C -0.234 4.234 29 N -0.610 5.610 30 Si 0.756 3.244 31 H -0.209 1.209 32 H -0.254 1.254 33 H -0.166 1.166 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.109 0.891 39 H 0.113 0.887 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.067 0.933 43 H 0.091 0.909 44 H 0.097 0.903 45 H 0.235 0.765 46 H 0.070 0.930 47 H 0.107 0.893 48 H 0.076 0.924 49 H 0.114 0.886 50 H 0.108 0.892 51 H 0.074 0.926 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.872 4.498 -18.619 20.034 hybrid contribution 1.170 -0.408 1.277 1.780 sum 7.042 4.091 -17.342 19.159 Atomic orbital electron populations 1.20282 0.85878 1.03933 1.03521 1.22596 0.97875 0.90423 0.98407 1.77215 0.87646 1.23138 1.27573 1.46169 1.07062 1.05231 1.59795 0.70574 1.21289 0.97532 0.84937 0.98940 1.20874 0.92081 0.98618 1.04886 1.19752 0.91814 0.95888 1.18588 1.19475 1.01858 0.89709 0.93354 1.21268 0.98946 0.92121 0.99636 0.88864 1.21937 0.94908 1.03326 0.99783 1.21001 0.77047 0.88353 0.82944 1.90621 1.54198 1.68757 1.31930 1.46174 1.63688 1.17490 1.08903 1.22424 0.94132 0.82879 0.97502 0.88893 1.23271 0.94612 1.00578 0.98038 1.23197 0.91815 0.93615 0.88710 0.88709 1.23249 0.94505 0.96295 1.02000 1.23349 0.97204 0.94884 1.01675 1.23507 0.91957 0.94711 0.89915 0.90589 1.46934 1.02224 1.68637 1.16994 1.18522 0.95548 1.25874 0.92970 0.91766 1.25218 0.99526 1.00240 0.98367 1.69965 1.28247 1.33940 1.28854 0.86253 0.80257 0.83075 0.74773 1.20897 1.25381 1.16561 0.90184 0.90364 0.89585 0.88664 0.89058 0.88738 0.91263 0.90653 0.93264 0.90939 0.90314 0.76465 0.93044 0.89261 0.92375 0.88615 0.89212 0.92578 0.93375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 10.26 71.24 0.73 -0.81 16 2 C 0.07 1.76 7.22 43.10 0.31 2.07 16 3 N -0.33 -8.35 12.70 -47.38 -0.60 -8.95 16 4 N -0.47 -8.95 7.36 -48.00 -0.35 -9.31 16 5 H 0.45 5.52 8.96 -213.34 -1.91 3.61 16 6 C 0.10 1.88 6.27 41.40 0.26 2.14 16 7 C -0.11 -1.23 9.47 71.23 0.67 -0.56 16 8 C -0.25 -5.54 4.82 -20.14 -0.10 -5.64 16 9 C -0.01 -0.11 4.00 29.85 0.12 0.00 16 10 C -0.10 -2.45 2.71 -11.54 -0.03 -2.48 16 11 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 12 C -0.14 -3.16 7.48 71.98 0.54 -2.62 16 13 C 0.52 15.92 7.15 87.65 0.63 16.55 16 14 O -0.57 -20.03 15.64 -3.01 -0.05 -20.08 16 15 N -0.71 -23.73 4.99 -434.93 -2.17 -25.90 16 16 C 0.14 4.55 2.73 46.60 0.13 4.68 16 17 H 0.09 2.93 7.36 -2.39 -0.02 2.92 16 18 C -0.12 -3.92 6.22 32.21 0.20 -3.72 16 19 C 0.13 4.53 5.43 46.23 0.25 4.78 16 20 H 0.09 3.19 8.14 -2.39 -0.02 3.17 16 21 C -0.12 -3.48 6.58 32.87 0.22 -3.27 16 22 C -0.13 -4.14 6.26 32.87 0.21 -3.94 16 23 C 0.11 3.96 3.14 46.23 0.15 4.11 16 24 H 0.08 3.15 3.47 -2.39 -0.01 3.14 16 25 N -0.62 -26.96 2.85 -615.30 -1.76 -28.72 16 26 C -0.20 -10.77 10.94 84.03 0.92 -9.85 16 27 H 0.06 3.79 8.06 -2.91 -0.02 3.77 16 28 C -0.04 -2.25 5.49 84.86 0.47 -1.78 16 29 N -0.96 -58.61 13.97 21.65 0.30 -58.30 16 30 Si 0.92 43.89 24.62 68.60 1.69 45.58 16 31 H -0.28 -12.68 6.76 99.48 0.67 -12.01 16 32 H -0.32 -16.25 7.11 99.48 0.71 -15.54 16 33 H -0.24 -10.55 4.83 99.48 0.48 -10.07 16 34 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.09 1.57 7.25 -2.39 -0.02 1.55 16 37 H 0.09 0.86 8.14 -2.39 -0.02 0.85 16 38 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.09 1.19 4.52 -2.39 -0.01 1.18 16 40 H 0.07 1.70 7.07 -2.39 -0.02 1.68 16 41 H 0.07 1.66 7.78 -2.39 -0.02 1.64 16 42 H 0.05 1.24 7.56 -2.38 -0.02 1.22 16 43 H 0.07 1.42 6.97 -2.39 -0.02 1.41 16 44 H 0.08 1.57 5.78 -2.39 -0.01 1.56 16 45 H 0.40 14.44 8.04 -92.71 -0.75 13.70 16 46 H 0.05 1.75 7.98 -2.39 -0.02 1.74 16 47 H 0.09 2.37 7.80 -2.39 -0.02 2.35 16 48 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 49 H 0.10 2.12 7.81 -2.39 -0.02 2.10 16 50 H 0.09 2.28 7.82 -2.39 -0.02 2.26 16 51 H 0.06 1.91 6.58 -2.39 -0.02 1.89 16 52 H 0.26 15.12 8.31 -92.70 -0.77 14.35 16 Total: -1.00 -70.66 393.10 0.77 -69.89 By element: Atomic # 1 Polarization: 38.07 SS G_CDS: -1.96 Total: 36.12 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: 5.66 Total: -0.33 kcal Atomic # 7 Polarization: -126.60 SS G_CDS: -4.58 Total: -131.18 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -0.05 Total: -20.08 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.69 Total: 45.58 kcal Total: -70.66 0.77 -69.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111422414.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.653 kcal (2) G-P(sol) polarization free energy of solvation -70.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds