Wall clock time and date at job start Wed Apr 1 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32136 * 119.89910 * 2 1 4 4 C 1.32079 * 120.07122 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.06155 * 180.02562 * 4 3 2 6 6 C 1.39440 * 119.87119 * 359.97438 * 4 3 2 7 7 C 1.48149 * 120.09465 * 180.02562 * 6 4 3 8 8 O 1.21524 * 119.99981 * 75.67135 * 7 6 4 9 9 N 1.34773 * 120.00055 * 255.66902 * 7 6 4 10 10 C 1.46933 * 120.62972 * 184.78926 * 9 7 6 11 11 C 1.52759 * 109.00645 * 233.58372 * 10 9 7 12 12 C 1.53038 * 109.38650 * 305.58941 * 11 10 9 13 13 H 1.08997 * 109.46350 * 181.25810 * 12 11 10 14 14 C 1.52997 * 109.44900 * 301.22837 * 12 11 10 15 15 C 1.53043 * 109.53694 * 61.23846 * 12 11 10 16 16 H 1.08997 * 109.49442 * 58.59129 * 15 12 11 17 17 C 1.53006 * 109.52335 * 178.66848 * 15 12 11 18 18 N 1.46495 * 109.46956 * 184.85755 * 17 15 12 19 19 C 1.36938 * 119.99996 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99949 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00141 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00094 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00217 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47297 * 89.99747 * 23 21 19 25 25 H 1.48501 * 109.47654 * 210.00204 * 23 21 19 26 26 H 1.48506 * 109.47427 * 330.00342 * 23 21 19 27 27 C 1.46928 * 120.63015 * 5.07072 * 9 7 6 28 28 N 1.32996 * 119.80724 * 359.97438 * 6 4 3 29 29 C 1.31799 * 119.92861 * 359.71930 * 28 6 4 30 30 C 1.50698 * 119.93933 * 180.29126 * 29 28 6 31 31 H 1.08998 * 109.47069 * 90.00758 * 1 2 3 32 32 H 1.08993 * 109.47383 * 330.00214 * 1 2 3 33 33 H 1.09005 * 109.46849 * 210.00253 * 1 2 3 34 34 H 1.08992 * 109.47697 * 85.24416 * 5 4 3 35 35 H 1.09004 * 109.47175 * 205.24402 * 5 4 3 36 36 H 1.09008 * 109.47370 * 325.23997 * 5 4 3 37 37 H 1.08995 * 109.58595 * 353.41769 * 10 9 7 38 38 H 1.08996 * 109.58425 * 113.84428 * 10 9 7 39 39 H 1.08998 * 109.56470 * 185.55651 * 11 10 9 40 40 H 1.09006 * 109.38748 * 65.51706 * 11 10 9 41 41 H 1.09000 * 109.47201 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.47163 * 300.05747 * 14 12 11 43 43 H 1.09001 * 109.47552 * 60.06133 * 14 12 11 44 44 H 1.08999 * 109.46932 * 304.85548 * 17 15 12 45 45 H 1.08995 * 109.47058 * 64.85817 * 17 15 12 46 46 H 0.97003 * 120.00595 * 359.97438 * 18 17 15 47 47 H 0.96998 * 120.00197 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.58373 * 246.15734 * 27 9 7 49 49 H 1.08997 * 109.58492 * 6.58171 * 27 9 7 50 50 H 1.08996 * 109.47394 * 270.26429 * 30 29 28 51 51 H 1.09003 * 109.47117 * 30.26454 * 30 29 28 52 52 H 1.09002 * 109.47355 * 150.26528 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1495 -0.0005 5 6 4.2375 2.4560 0.0001 6 6 4.1846 -0.0576 -0.0005 7 6 5.6661 -0.0589 -0.0005 8 8 6.2740 0.2010 1.0192 9 7 6.3397 -0.3484 -1.1314 10 6 7.8051 -0.4566 -1.1230 11 6 8.3780 0.4642 -2.1988 12 6 7.7308 0.1356 -3.5461 13 1 8.1550 0.7768 -4.3188 14 6 7.9985 -1.3296 -3.8959 15 6 6.2212 0.3715 -3.4598 16 1 6.0302 1.4092 -3.1862 17 6 5.5789 0.0747 -4.8164 18 7 4.1540 0.4112 -4.7662 19 6 3.3677 0.2277 -5.8722 20 1 3.7981 -0.1648 -6.7816 21 6 2.0174 0.5460 -5.8244 22 7 1.4929 1.0248 -4.7162 23 14 0.9449 0.2964 -7.3333 24 1 0.3687 -1.0721 -7.3101 25 1 -0.1532 1.2960 -7.3311 26 1 1.7667 0.4665 -8.5584 27 6 5.6232 -0.5559 -2.3972 28 7 3.5166 -1.2076 0.0005 29 6 2.1987 -1.2026 0.0071 30 6 1.4416 -2.5055 0.0149 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3634 0.8899 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 4.3451 2.8128 1.0243 35 1 5.2243 2.3081 -0.4387 36 1 3.6863 3.1922 -0.5852 37 1 8.1879 -0.1584 -0.1470 38 1 8.0967 -1.4855 -1.3334 39 1 9.4560 0.3184 -2.2679 40 1 8.1672 1.5013 -1.9373 41 1 7.5381 -1.5640 -4.8557 42 1 9.0737 -1.4979 -3.9574 43 1 7.5739 -1.9710 -3.1236 44 1 6.0662 0.6715 -5.5875 45 1 5.6942 -0.9839 -5.0492 46 1 3.7672 0.7634 -3.9492 47 1 0.5493 1.2470 -4.6827 48 1 5.7334 -1.5931 -2.7136 49 1 4.5671 -0.3232 -2.2616 50 1 1.2580 -2.8252 -1.0108 51 1 2.0291 -3.2641 0.5323 52 1 0.4900 -2.3698 0.5290 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132965857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:47 Heat of formation + Delta-G solvation = 12.384852 kcal Electronic energy + Delta-G solvation = -32746.872170 eV Core-core repulsion = 28746.281099 eV Total energy + Delta-G solvation = -4000.591070 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41089 -40.05014 -38.10531 -34.90033 -34.78995 -34.34895 -33.47478 -32.00196 -30.24587 -29.97992 -28.84521 -27.68389 -26.25541 -25.55644 -24.64994 -23.44864 -23.07194 -22.01133 -21.08589 -20.01632 -18.40908 -18.06865 -17.28001 -16.97736 -16.37488 -15.30706 -15.17336 -15.02141 -14.94348 -14.82013 -14.39814 -14.04738 -13.64167 -13.54699 -13.40627 -13.25774 -13.06509 -12.92194 -12.84833 -12.76902 -12.54549 -12.45497 -12.23548 -12.09684 -11.88351 -11.70036 -11.67503 -11.37684 -11.32915 -11.05553 -10.97734 -10.85068 -10.67598 -10.61938 -10.40013 -10.26194 -10.09913 -9.96161 -9.66875 -8.92306 -8.91135 -8.65979 -8.51393 -6.95932 -5.79101 -3.08506 0.75004 1.25853 2.47429 2.91096 3.39870 3.45755 3.46877 3.69138 4.01343 4.16805 4.49407 4.53717 4.56046 4.79947 4.85649 4.89896 5.00812 5.05460 5.13869 5.26047 5.33108 5.40915 5.43986 5.51509 5.55236 5.58077 5.63871 5.68195 5.68795 5.69615 5.75596 5.76613 5.81493 5.88068 5.95581 5.97965 6.00235 6.03755 6.06361 6.14074 6.27838 6.29525 6.30814 6.44301 6.50109 6.58147 6.69972 6.82606 7.32650 7.40780 7.66846 7.89409 8.08224 8.37970 9.49405 10.05809 10.40198 11.42810 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007179 B = 0.005704 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3899.215658 B = 4907.987688 C = 7662.835131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.113 3.887 3 N -0.427 5.427 4 C 0.123 3.877 5 C -0.101 4.101 6 C 0.037 3.963 7 C 0.592 3.408 8 O -0.534 6.534 9 N -0.594 5.594 10 C 0.111 3.889 11 C -0.128 4.128 12 C -0.084 4.084 13 H 0.075 0.925 14 C -0.153 4.153 15 C -0.103 4.103 16 H 0.074 0.926 17 C 0.160 3.840 18 N -0.732 5.732 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.011 4.011 22 N -0.928 5.928 23 Si 0.904 3.096 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C 0.121 3.879 28 N -0.406 5.406 29 C 0.075 3.925 30 C -0.100 4.100 31 H 0.094 0.906 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.051 0.949 43 H 0.057 0.943 44 H 0.023 0.977 45 H 0.024 0.976 46 H 0.381 0.619 47 H 0.254 0.746 48 H 0.074 0.926 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.077 0.923 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.908 -3.726 9.779 12.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.029 4.029 3 N -0.142 5.142 4 C -0.018 4.018 5 C -0.159 4.159 6 C -0.106 4.106 7 C 0.377 3.623 8 O -0.410 6.410 9 N -0.326 5.326 10 C -0.011 4.011 11 C -0.167 4.167 12 C -0.104 4.104 13 H 0.094 0.906 14 C -0.211 4.211 15 C -0.123 4.123 16 H 0.092 0.908 17 C 0.032 3.968 18 N -0.377 5.377 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.207 4.207 22 N -0.577 5.577 23 Si 0.735 3.265 24 H -0.218 1.218 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.001 4.001 28 N -0.123 5.123 29 C -0.068 4.068 30 C -0.158 4.158 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.041 0.959 45 H 0.042 0.958 46 H 0.214 0.786 47 H 0.064 0.936 48 H 0.093 0.907 49 H 0.103 0.897 50 H 0.105 0.895 51 H 0.096 0.904 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.226 -3.619 10.152 12.976 hybrid contribution -0.852 -0.003 -0.823 1.184 sum 6.374 -3.622 9.330 11.865 Atomic orbital electron populations 1.20833 0.87584 1.03510 1.04412 1.22267 0.98503 0.88691 0.93487 1.68177 1.07392 1.28892 1.09762 1.22054 0.90300 0.95655 0.93769 1.20719 0.98978 0.92592 1.03622 1.21610 0.95201 0.90688 1.03064 1.17671 0.85236 0.76047 0.83354 1.90761 1.68677 1.49177 1.32418 1.48063 1.07302 1.68475 1.08787 1.21592 0.78807 1.00078 1.00658 1.21877 0.99928 1.00003 0.94844 1.21076 0.94941 0.97536 0.96798 0.90645 1.21992 1.00915 0.95893 1.02254 1.21717 0.94382 0.99816 0.96392 0.90777 1.20702 0.86188 0.97528 0.92412 1.42376 1.03110 1.78130 1.14046 1.19193 0.90393 1.35983 0.91590 0.91243 1.24714 0.96917 1.01889 0.97185 1.69665 1.12417 1.49839 1.25764 0.86240 0.80440 0.77304 0.82493 1.21783 1.21785 1.20812 1.21828 0.96522 1.00019 0.81735 1.68153 1.08459 1.27854 1.07800 1.22025 0.89900 0.96936 0.97930 1.20752 0.98970 0.92110 1.03953 0.88804 0.90210 0.90060 0.89678 0.90811 0.89206 0.89079 0.90997 0.90615 0.91446 0.91798 0.92979 0.92435 0.95891 0.95790 0.78564 0.93605 0.90735 0.89707 0.89457 0.90430 0.89967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 9.79 36.01 0.35 -0.95 16 2 C 0.11 1.82 6.79 -82.28 -0.56 1.26 16 3 N -0.43 -7.67 10.34 -5.24 -0.05 -7.73 16 4 C 0.12 2.17 6.82 -82.04 -0.56 1.61 16 5 C -0.10 -1.51 9.89 36.00 0.36 -1.16 16 6 C 0.04 0.66 4.48 -82.85 -0.37 0.29 16 7 C 0.59 10.26 5.73 -12.19 -0.07 10.19 16 8 O -0.53 -10.09 16.52 5.34 0.09 -10.00 16 9 N -0.59 -9.06 2.98 -174.03 -0.52 -9.58 16 10 C 0.11 1.37 5.95 -3.93 -0.02 1.34 16 11 C -0.13 -1.40 5.61 -26.84 -0.15 -1.55 16 12 C -0.08 -1.03 2.71 -90.58 -0.25 -1.28 16 13 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 14 C -0.15 -1.74 8.11 37.16 0.30 -1.44 16 15 C -0.10 -1.63 2.15 -90.50 -0.19 -1.82 16 16 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 17 C 0.16 3.07 5.19 -4.04 -0.02 3.05 16 18 N -0.73 -17.97 5.38 -59.91 -0.32 -18.29 16 19 C -0.24 -6.57 9.99 -15.06 -0.15 -6.72 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.30 5.50 -17.43 -0.10 -0.40 16 22 N -0.93 -27.16 13.06 55.49 0.72 -26.43 16 23 Si 0.90 22.00 29.55 -169.99 -5.02 16.98 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.12 1.99 4.94 -3.71 -0.02 1.97 16 28 N -0.41 -7.21 10.34 -5.89 -0.06 -7.27 16 29 C 0.08 1.19 6.79 -82.43 -0.56 0.64 16 30 C -0.10 -1.17 9.78 36.00 0.35 -0.82 16 31 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.73 5.93 -51.93 -0.31 0.43 16 34 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.08 6.90 -51.93 -0.36 0.73 16 36 H 0.09 1.31 8.14 -51.92 -0.42 0.89 16 37 H 0.09 1.16 6.99 -51.93 -0.36 0.80 16 38 H 0.07 0.80 6.70 -51.93 -0.35 0.46 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.78 6.57 -51.93 -0.34 0.44 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.06 0.67 4.99 -51.93 -0.26 0.41 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.02 0.46 6.73 -51.93 -0.35 0.11 16 46 H 0.38 9.98 6.89 -40.82 -0.28 9.69 16 47 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 48 H 0.07 1.21 6.69 -51.93 -0.35 0.87 16 49 H 0.08 1.66 5.56 -51.93 -0.29 1.37 16 50 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 52 H 0.08 0.72 5.94 -51.93 -0.31 0.41 16 LS Contribution 403.45 15.07 6.08 6.08 Total: -1.00 -32.82 403.45 -8.91 -41.74 By element: Atomic # 1 Polarization: 18.45 SS G_CDS: -8.17 Total: 10.28 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -1.66 Total: 4.22 kcal Atomic # 7 Polarization: -69.06 SS G_CDS: -0.23 Total: -69.30 kcal Atomic # 8 Polarization: -10.09 SS G_CDS: 0.09 Total: -10.00 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.82 -8.91 -41.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132965857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.124 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds