Wall clock time and date at job start Wed Apr 1 2020 04:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.32136 * 119.89910 * 2 1 4 4 C 1.32079 * 120.07122 * 180.02562 * 3 2 1 5 5 C 1.50694 * 120.06155 * 180.02562 * 4 3 2 6 6 C 1.39440 * 119.87119 * 359.97438 * 4 3 2 7 7 C 1.48149 * 120.09465 * 180.02562 * 6 4 3 8 8 O 1.21524 * 119.99981 * 75.67135 * 7 6 4 9 9 N 1.34773 * 120.00055 * 255.66902 * 7 6 4 10 10 C 1.46933 * 120.62972 * 184.78926 * 9 7 6 11 11 C 1.52759 * 109.00645 * 233.58372 * 10 9 7 12 12 C 1.53038 * 109.38650 * 305.58941 * 11 10 9 13 13 H 1.08997 * 109.46350 * 181.25810 * 12 11 10 14 14 C 1.52997 * 109.44900 * 301.22837 * 12 11 10 15 15 C 1.53043 * 109.53694 * 61.23846 * 12 11 10 16 16 H 1.08997 * 109.49442 * 58.59129 * 15 12 11 17 17 C 1.53006 * 109.52335 * 178.66848 * 15 12 11 18 18 N 1.46495 * 109.46956 * 184.85755 * 17 15 12 19 19 C 1.36938 * 119.99996 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99949 * 359.97438 * 19 18 17 21 21 C 1.38813 * 120.00141 * 179.97438 * 19 18 17 22 22 N 1.31623 * 120.00094 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00217 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47297 * 89.99747 * 23 21 19 25 25 H 1.48501 * 109.47654 * 210.00204 * 23 21 19 26 26 H 1.48506 * 109.47427 * 330.00342 * 23 21 19 27 27 C 1.46928 * 120.63015 * 5.07072 * 9 7 6 28 28 N 1.32996 * 119.80724 * 359.97438 * 6 4 3 29 29 C 1.31799 * 119.92861 * 359.71930 * 28 6 4 30 30 C 1.50698 * 119.93933 * 180.29126 * 29 28 6 31 31 H 1.08998 * 109.47069 * 90.00758 * 1 2 3 32 32 H 1.08993 * 109.47383 * 330.00214 * 1 2 3 33 33 H 1.09005 * 109.46849 * 210.00253 * 1 2 3 34 34 H 1.08992 * 109.47697 * 85.24416 * 5 4 3 35 35 H 1.09004 * 109.47175 * 205.24402 * 5 4 3 36 36 H 1.09008 * 109.47370 * 325.23997 * 5 4 3 37 37 H 1.08995 * 109.58595 * 353.41769 * 10 9 7 38 38 H 1.08996 * 109.58425 * 113.84428 * 10 9 7 39 39 H 1.08998 * 109.56470 * 185.55651 * 11 10 9 40 40 H 1.09006 * 109.38748 * 65.51706 * 11 10 9 41 41 H 1.09000 * 109.47201 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.47163 * 300.05747 * 14 12 11 43 43 H 1.09001 * 109.47552 * 60.06133 * 14 12 11 44 44 H 1.08999 * 109.46932 * 304.85548 * 17 15 12 45 45 H 1.08995 * 109.47058 * 64.85817 * 17 15 12 46 46 H 0.97003 * 120.00595 * 359.97438 * 18 17 15 47 47 H 0.96998 * 120.00197 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.58373 * 246.15734 * 27 9 7 49 49 H 1.08997 * 109.58492 * 6.58171 * 27 9 7 50 50 H 1.08996 * 109.47394 * 270.26429 * 30 29 28 51 51 H 1.09003 * 109.47117 * 30.26454 * 30 29 28 52 52 H 1.09002 * 109.47355 * 150.26528 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1495 -0.0005 5 6 4.2375 2.4560 0.0001 6 6 4.1846 -0.0576 -0.0005 7 6 5.6661 -0.0589 -0.0005 8 8 6.2740 0.2010 1.0192 9 7 6.3397 -0.3484 -1.1314 10 6 7.8051 -0.4566 -1.1230 11 6 8.3780 0.4642 -2.1988 12 6 7.7308 0.1356 -3.5461 13 1 8.1550 0.7768 -4.3188 14 6 7.9985 -1.3296 -3.8959 15 6 6.2212 0.3715 -3.4598 16 1 6.0302 1.4092 -3.1862 17 6 5.5789 0.0747 -4.8164 18 7 4.1540 0.4112 -4.7662 19 6 3.3677 0.2277 -5.8722 20 1 3.7981 -0.1648 -6.7816 21 6 2.0174 0.5460 -5.8244 22 7 1.4929 1.0248 -4.7162 23 14 0.9449 0.2964 -7.3333 24 1 0.3687 -1.0721 -7.3101 25 1 -0.1532 1.2960 -7.3311 26 1 1.7667 0.4665 -8.5584 27 6 5.6232 -0.5559 -2.3972 28 7 3.5166 -1.2076 0.0005 29 6 2.1987 -1.2026 0.0071 30 6 1.4416 -2.5055 0.0149 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3634 0.8899 0.5138 33 1 -0.3633 -0.8900 0.5139 34 1 4.3451 2.8128 1.0243 35 1 5.2243 2.3081 -0.4387 36 1 3.6863 3.1922 -0.5852 37 1 8.1879 -0.1584 -0.1470 38 1 8.0967 -1.4855 -1.3334 39 1 9.4560 0.3184 -2.2679 40 1 8.1672 1.5013 -1.9373 41 1 7.5381 -1.5640 -4.8557 42 1 9.0737 -1.4979 -3.9574 43 1 7.5739 -1.9710 -3.1236 44 1 6.0662 0.6715 -5.5875 45 1 5.6942 -0.9839 -5.0492 46 1 3.7672 0.7634 -3.9492 47 1 0.5493 1.2470 -4.6827 48 1 5.7334 -1.5931 -2.7136 49 1 4.5671 -0.3232 -2.2616 50 1 1.2580 -2.8252 -1.0108 51 1 2.0291 -3.2641 0.5323 52 1 0.4900 -2.3698 0.5290 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132965857.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:46 Heat of formation + Delta-G solvation = -9.198984 kcal Electronic energy + Delta-G solvation = -32747.808115 eV Core-core repulsion = 28746.281099 eV Total energy + Delta-G solvation = -4001.527016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.67426 -41.28410 -39.41231 -36.56623 -36.08796 -35.57425 -34.78614 -33.62663 -31.60593 -31.38557 -30.00180 -28.80452 -27.41837 -27.17654 -25.81609 -25.01072 -24.42345 -23.29800 -22.43905 -21.33001 -19.71263 -19.33089 -18.94524 -18.44648 -17.67994 -16.79274 -16.52829 -16.32848 -16.11200 -16.05617 -15.81431 -15.47645 -15.26098 -14.73332 -14.64659 -14.57116 -14.40076 -14.20220 -13.99393 -13.91465 -13.81928 -13.66259 -13.41732 -13.22844 -13.05119 -13.00263 -12.86921 -12.77385 -12.71296 -12.55444 -12.49076 -12.16358 -12.06713 -11.91878 -11.87798 -11.77782 -11.57017 -11.31133 -11.21832 -10.91780 -10.20885 -9.89942 -9.74885 -8.98491 -7.92349 -5.22091 -0.52654 -0.03389 1.14007 1.46683 1.47457 1.55691 1.67072 2.42285 2.55529 2.78816 2.95547 3.27993 3.35312 3.40447 3.58388 3.76139 3.79950 3.83252 3.92912 4.01514 4.06008 4.10101 4.24666 4.36818 4.40258 4.43544 4.48044 4.54497 4.57098 4.66625 4.68753 4.71239 4.73383 4.77340 4.81749 4.87717 4.91753 4.93852 5.02259 5.03357 5.08179 5.12005 5.18672 5.26032 5.35999 5.40729 5.43590 5.50909 5.56968 6.02542 6.13149 6.27051 6.61527 6.77259 7.33734 8.07271 8.30865 9.29571 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.007179 B = 0.005704 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3899.215658 B = 4907.987688 C = 7662.835131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.099 3.901 3 N -0.451 5.451 4 C 0.102 3.898 5 C -0.095 4.095 6 C 0.018 3.982 7 C 0.591 3.409 8 O -0.555 6.555 9 N -0.587 5.587 10 C 0.104 3.896 11 C -0.119 4.119 12 C -0.078 4.078 13 H 0.086 0.914 14 C -0.150 4.150 15 C -0.092 4.092 16 H 0.058 0.942 17 C 0.161 3.839 18 N -0.744 5.744 19 C -0.247 4.247 20 H 0.074 0.926 21 C -0.068 4.068 22 N -0.959 5.959 23 Si 0.967 3.033 24 H -0.287 1.287 25 H -0.297 1.297 26 H -0.272 1.272 27 C 0.135 3.865 28 N -0.425 5.425 29 C 0.066 3.934 30 C -0.097 4.097 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.071 0.929 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.111 0.889 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.052 0.948 44 H 0.026 0.974 45 H 0.030 0.970 46 H 0.369 0.631 47 H 0.249 0.751 48 H 0.076 0.924 49 H 0.049 0.951 50 H 0.086 0.914 51 H 0.085 0.915 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 -4.868 9.251 13.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.044 4.044 3 N -0.166 5.166 4 C -0.038 4.038 5 C -0.153 4.153 6 C -0.123 4.123 7 C 0.376 3.624 8 O -0.433 6.433 9 N -0.318 5.318 10 C -0.016 4.016 11 C -0.157 4.157 12 C -0.097 4.097 13 H 0.105 0.895 14 C -0.207 4.207 15 C -0.112 4.112 16 H 0.076 0.924 17 C 0.034 3.966 18 N -0.386 5.386 19 C -0.378 4.378 20 H 0.092 0.908 21 C -0.261 4.261 22 N -0.610 5.610 23 Si 0.797 3.203 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.197 1.197 27 C 0.012 3.988 28 N -0.142 5.142 29 C -0.078 4.078 30 C -0.154 4.154 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.106 0.894 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.071 0.929 42 H 0.098 0.902 43 H 0.071 0.929 44 H 0.044 0.956 45 H 0.048 0.952 46 H 0.200 0.800 47 H 0.058 0.942 48 H 0.094 0.906 49 H 0.068 0.932 50 H 0.104 0.896 51 H 0.104 0.896 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.358 -4.772 9.591 13.587 hybrid contribution -1.172 0.312 -0.679 1.390 sum 7.186 -4.461 8.912 12.287 Atomic orbital electron populations 1.20948 0.84915 1.05718 1.04281 1.22979 1.00364 0.88471 0.92574 1.68213 1.07685 1.30091 1.10658 1.22406 0.90655 0.96529 0.94162 1.20712 0.98450 0.91638 1.04498 1.21768 0.95720 0.91035 1.03825 1.17669 0.85122 0.75989 0.83580 1.90732 1.69023 1.50496 1.33091 1.48091 1.08553 1.67482 1.07679 1.21884 0.76710 1.01672 1.01337 1.21852 1.01690 0.99139 0.93026 1.21070 0.91817 0.98703 0.98148 0.89545 1.21965 1.02680 0.94683 1.01379 1.21592 0.96976 0.98569 0.94054 0.92395 1.20841 0.83657 0.97582 0.94531 1.42571 1.05104 1.78082 1.12888 1.19569 0.90971 1.34922 0.92378 0.90763 1.25474 0.98272 1.02489 0.99833 1.69829 1.12234 1.51290 1.27607 0.85241 0.78520 0.76907 0.79677 1.21387 1.22365 1.19701 1.21558 0.94804 1.00056 0.82388 1.68183 1.09513 1.27931 1.08543 1.22757 0.89647 0.98666 0.96701 1.20893 1.00050 0.90067 1.04365 0.89790 0.89592 0.86345 0.88133 0.91011 0.89424 0.89213 0.89144 0.87083 0.92094 0.92897 0.90182 0.92928 0.95624 0.95192 0.79972 0.94205 0.90557 0.93231 0.89600 0.89646 0.86641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.42 9.79 71.24 0.70 -1.72 16 2 C 0.10 3.24 6.79 42.63 0.29 3.53 16 3 N -0.45 -16.86 10.34 -170.48 -1.76 -18.62 16 4 C 0.10 3.78 6.82 42.81 0.29 4.07 16 5 C -0.10 -2.99 9.89 71.23 0.70 -2.29 16 6 C 0.02 0.66 4.48 41.89 0.19 0.85 16 7 C 0.59 20.96 5.73 86.88 0.50 21.46 16 8 O -0.56 -21.27 16.52 -3.79 -0.06 -21.33 16 9 N -0.59 -17.86 2.98 -822.80 -2.45 -20.31 16 10 C 0.10 2.40 5.95 86.22 0.51 2.91 16 11 C -0.12 -2.27 5.61 30.53 0.17 -2.10 16 12 C -0.08 -1.74 2.71 -10.77 -0.03 -1.77 16 13 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 14 C -0.15 -2.97 8.11 71.98 0.58 -2.39 16 15 C -0.09 -2.88 2.15 -10.71 -0.02 -2.91 16 16 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 17 C 0.16 6.15 5.19 86.38 0.45 6.60 16 18 N -0.74 -37.19 5.38 -343.46 -1.85 -39.03 16 19 C -0.25 -13.55 9.99 84.03 0.84 -12.71 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.90 16 21 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 22 N -0.96 -57.42 13.06 21.65 0.28 -57.14 16 23 Si 0.97 45.44 29.55 68.60 2.03 47.47 16 24 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 25 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.13 4.47 4.94 86.36 0.43 4.90 16 28 N -0.43 -15.51 10.34 -172.54 -1.78 -17.30 16 29 C 0.07 2.11 6.79 42.68 0.29 2.40 16 30 C -0.10 -2.13 9.78 71.24 0.70 -1.43 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.12 1.85 5.93 -2.38 -0.01 1.83 16 34 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.07 2.22 6.90 -2.38 -0.02 2.20 16 36 H 0.09 2.72 8.14 -2.38 -0.02 2.70 16 37 H 0.09 2.15 6.99 -2.39 -0.02 2.13 16 38 H 0.09 1.78 6.70 -2.39 -0.02 1.76 16 39 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.05 1.17 6.57 -2.39 -0.02 1.16 16 42 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 43 H 0.05 1.10 4.99 -2.39 -0.01 1.08 16 44 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.03 1.13 6.73 -2.39 -0.02 1.12 16 46 H 0.37 20.08 6.89 -92.71 -0.64 19.44 16 47 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 48 H 0.08 2.49 6.69 -2.39 -0.02 2.47 16 49 H 0.05 2.03 5.56 -2.39 -0.01 2.02 16 50 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 52 H 0.12 1.71 5.94 -2.39 -0.01 1.70 16 Total: -1.00 -72.98 403.45 1.76 -71.22 By element: Atomic # 1 Polarization: 38.68 SS G_CDS: 0.30 Total: 38.99 kcal Atomic # 6 Polarization: 9.01 SS G_CDS: 7.05 Total: 16.07 kcal Atomic # 7 Polarization: -144.84 SS G_CDS: -7.56 Total: -152.40 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.06 Total: -21.33 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal Total: -72.98 1.76 -71.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132965857.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.016 kcal (2) G-P(sol) polarization free energy of solvation -72.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds