Wall clock time and date at job start Wed Apr 1 2020 04:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.32141 * 119.90082 * 2 1 4 4 C 1.32079 * 120.06971 * 179.75815 * 3 2 1 5 5 C 1.50698 * 120.06260 * 180.27912 * 4 3 2 6 6 C 1.39441 * 119.87467 * 0.53960 * 4 3 2 7 7 C 1.48145 * 120.09984 * 179.73688 * 6 4 3 8 8 O 1.21521 * 120.00225 * 284.36544 * 7 6 4 9 9 N 1.34773 * 120.00181 * 104.36249 * 7 6 4 10 10 C 1.46931 * 120.63336 * 174.65032 * 9 7 6 11 11 C 1.53195 * 108.77528 * 126.66352 * 10 9 7 12 12 C 1.53045 * 109.30864 * 54.63907 * 11 10 9 13 13 H 1.08994 * 109.46040 * 58.65469 * 12 11 10 14 14 C 1.53002 * 109.44829 * 178.62015 * 12 11 10 15 15 C 1.53041 * 109.53833 * 298.63118 * 12 11 10 16 16 H 1.09003 * 109.49717 * 301.41593 * 15 12 11 17 17 C 1.52997 * 109.52377 * 181.33505 * 15 12 11 18 18 N 1.46506 * 109.47323 * 175.14493 * 17 15 12 19 19 C 1.36933 * 120.00064 * 179.97438 * 18 17 15 20 20 H 1.08000 * 120.00189 * 0.02562 * 19 18 17 21 21 C 1.38816 * 119.99747 * 180.02562 * 19 18 17 22 22 N 1.31614 * 119.99910 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 119.99653 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47052 * 90.00164 * 23 21 19 25 25 H 1.48504 * 109.46979 * 210.00084 * 23 21 19 26 26 H 1.48495 * 109.47328 * 329.99761 * 23 21 19 27 27 C 1.46927 * 120.62883 * 354.93064 * 9 7 6 28 28 N 1.33009 * 119.80326 * 359.46270 * 6 4 3 29 29 C 1.31803 * 119.92774 * 0.25269 * 28 6 4 30 30 C 1.50690 * 119.93423 * 179.97438 * 29 28 6 31 31 H 1.09003 * 109.46874 * 269.97480 * 1 2 3 32 32 H 1.08996 * 109.47161 * 29.97828 * 1 2 3 33 33 H 1.09001 * 109.46942 * 149.97945 * 1 2 3 34 34 H 1.08996 * 109.47479 * 275.09264 * 5 4 3 35 35 H 1.09003 * 109.47634 * 35.09298 * 5 4 3 36 36 H 1.09001 * 109.47190 * 155.09314 * 5 4 3 37 37 H 1.08993 * 109.59002 * 246.45527 * 10 9 7 38 38 H 1.09001 * 109.58388 * 6.88016 * 10 9 7 39 39 H 1.08996 * 109.49822 * 294.69121 * 11 10 9 40 40 H 1.08992 * 109.52146 * 174.60013 * 11 10 9 41 41 H 1.09001 * 109.47173 * 180.02562 * 14 12 11 42 42 H 1.09004 * 109.46818 * 300.06481 * 14 12 11 43 43 H 1.09003 * 109.47011 * 60.05683 * 14 12 11 44 44 H 1.09008 * 109.47386 * 295.14602 * 17 15 12 45 45 H 1.09000 * 109.47555 * 55.14417 * 17 15 12 46 46 H 0.96997 * 119.99427 * 0.02562 * 18 17 15 47 47 H 0.97002 * 120.00024 * 180.02562 * 22 21 19 48 48 H 1.09001 * 109.58960 * 353.11982 * 27 9 7 49 49 H 1.09001 * 109.58834 * 113.54728 * 27 9 7 50 50 H 1.08997 * 109.47603 * 90.00014 * 30 29 28 51 51 H 1.09001 * 109.47107 * 210.00098 * 30 29 28 52 52 H 1.09004 * 109.47558 * 329.99817 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1455 0.0000 4 6 3.4865 1.1494 0.0048 5 6 4.2376 2.4559 0.0112 6 6 4.1847 -0.0576 -0.0015 7 6 5.6661 -0.0590 -0.0020 8 8 6.2737 0.2066 -1.0203 9 7 6.3402 -0.3549 1.1270 10 6 7.8045 -0.4751 1.1150 11 6 8.3832 0.4400 2.1988 12 6 7.7359 0.1032 3.5441 13 1 7.9222 -0.9434 3.7848 14 6 8.3366 0.9919 4.6351 15 6 6.2273 0.3467 3.4614 16 1 6.0407 1.3874 3.1964 17 6 5.5851 0.0418 4.8162 18 7 4.1616 0.3851 4.7703 19 6 3.3757 0.1961 5.8756 20 1 3.8053 -0.2056 6.7814 21 6 2.0268 0.5210 5.8319 22 7 1.5032 1.0102 4.7279 23 14 0.9549 0.2638 7.3400 24 1 0.9693 1.4932 8.1730 25 1 -0.4371 -0.0291 6.9137 26 1 1.4804 -0.8770 8.1321 27 6 5.6241 -0.5693 2.3919 28 7 3.5166 -1.2078 -0.0015 29 6 2.1986 -1.2026 -0.0006 30 6 1.4416 -2.5056 -0.0012 31 1 -0.3633 -0.0005 1.0277 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 4.3433 2.8192 -1.0110 35 1 3.6876 3.1884 0.6020 36 1 5.2252 2.3052 0.4472 37 1 8.0881 -1.5076 1.3188 38 1 8.1878 -0.1744 0.1399 39 1 8.1763 1.4797 1.9456 40 1 9.4606 0.2892 2.2656 41 1 7.8762 0.7521 5.5935 42 1 9.4112 0.8187 4.6941 43 1 8.1501 2.0386 4.3947 44 1 5.6959 -1.0192 5.0403 45 1 6.0759 0.6300 5.5916 46 1 3.7757 0.7456 3.9567 47 1 0.5607 1.2375 4.6975 48 1 4.5688 -0.3308 2.2594 49 1 5.7298 -1.6095 2.6999 50 1 1.2597 -2.8206 1.0263 51 1 0.4892 -2.3722 -0.5143 52 1 2.0281 -3.2665 -0.5161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132965858.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:50 Heat of formation + Delta-G solvation = -12.008094 kcal Electronic energy + Delta-G solvation = -32594.106257 eV Core-core repulsion = 28592.457429 eV Total energy + Delta-G solvation = -4001.648828 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.66015 -41.15832 -39.30889 -36.54198 -36.08899 -35.59659 -34.98799 -33.60960 -31.59556 -31.38530 -30.15160 -29.18741 -27.30632 -27.25576 -25.03536 -24.99135 -24.14761 -23.14512 -22.46799 -21.42614 -20.44169 -19.38928 -19.10265 -18.50959 -17.65366 -16.74916 -16.49379 -16.33594 -16.13430 -15.69306 -15.63917 -15.46191 -15.23048 -14.71692 -14.60249 -14.45147 -14.40405 -14.15160 -14.10682 -13.93744 -13.88034 -13.67234 -13.42426 -13.24164 -13.11891 -13.04988 -12.82568 -12.77624 -12.69004 -12.64843 -12.52455 -12.20909 -12.05384 -11.95027 -11.87347 -11.81538 -11.54525 -11.28566 -11.16432 -10.91858 -10.21628 -9.90533 -9.81098 -8.97625 -7.92109 -5.21634 -0.52973 -0.03699 1.13664 1.46653 1.47613 1.55689 1.66997 2.42108 2.55708 2.78295 2.95271 3.27777 3.35187 3.40676 3.57997 3.74808 3.77916 3.82960 3.91398 4.00424 4.06613 4.09946 4.24057 4.38024 4.39867 4.47320 4.48103 4.55627 4.58587 4.66514 4.72046 4.74003 4.75663 4.77256 4.81446 4.87126 4.90763 4.93778 5.01703 5.03279 5.06878 5.10301 5.15136 5.21100 5.40341 5.43568 5.44329 5.50856 5.55599 6.01832 6.12775 6.27329 6.61249 6.76810 7.34052 8.07694 8.31335 9.29858 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.006953 B = 0.005788 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4026.046568 B = 4836.500734 C = 7823.353781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.099 3.901 3 N -0.451 5.451 4 C 0.102 3.898 5 C -0.095 4.095 6 C 0.017 3.983 7 C 0.591 3.409 8 O -0.555 6.555 9 N -0.589 5.589 10 C 0.105 3.895 11 C -0.118 4.118 12 C -0.078 4.078 13 H 0.085 0.915 14 C -0.144 4.144 15 C -0.090 4.090 16 H 0.058 0.942 17 C 0.158 3.842 18 N -0.743 5.743 19 C -0.246 4.246 20 H 0.074 0.926 21 C -0.068 4.068 22 N -0.960 5.960 23 Si 0.967 3.033 24 H -0.290 1.290 25 H -0.295 1.295 26 H -0.271 1.271 27 C 0.133 3.867 28 N -0.425 5.425 29 C 0.066 3.934 30 C -0.097 4.097 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.100 0.900 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.059 0.941 40 H 0.110 0.890 41 H 0.052 0.948 42 H 0.078 0.922 43 H 0.047 0.953 44 H 0.023 0.977 45 H 0.036 0.964 46 H 0.369 0.631 47 H 0.249 0.751 48 H 0.051 0.949 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.115 0.885 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.025 -4.285 -9.091 12.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.044 4.044 3 N -0.167 5.167 4 C -0.037 4.037 5 C -0.153 4.153 6 C -0.124 4.124 7 C 0.377 3.623 8 O -0.433 6.433 9 N -0.320 5.320 10 C -0.016 4.016 11 C -0.155 4.155 12 C -0.097 4.097 13 H 0.103 0.897 14 C -0.201 4.201 15 C -0.110 4.110 16 H 0.076 0.924 17 C 0.031 3.969 18 N -0.386 5.386 19 C -0.378 4.378 20 H 0.092 0.908 21 C -0.261 4.261 22 N -0.610 5.610 23 Si 0.796 3.204 24 H -0.217 1.217 25 H -0.221 1.221 26 H -0.196 1.196 27 C 0.010 3.990 28 N -0.142 5.142 29 C -0.077 4.077 30 C -0.154 4.154 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.090 0.910 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.071 0.929 42 H 0.096 0.904 43 H 0.067 0.933 44 H 0.041 0.959 45 H 0.053 0.947 46 H 0.200 0.800 47 H 0.058 0.942 48 H 0.070 0.930 49 H 0.092 0.908 50 H 0.104 0.896 51 H 0.133 0.867 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.408 -4.198 -9.443 13.323 hybrid contribution -1.179 0.290 0.669 1.387 sum 7.229 -3.908 -8.774 12.021 Atomic orbital electron populations 1.20947 0.84915 1.05718 1.04280 1.22979 1.00359 0.88466 0.92569 1.68215 1.07684 1.30086 1.10672 1.22406 0.90654 0.96530 0.94141 1.20711 0.98437 0.91643 1.04504 1.21772 0.95722 0.91033 1.03852 1.17665 0.85125 0.76001 0.83530 1.90732 1.69057 1.50402 1.33126 1.48110 1.08670 1.67349 1.07829 1.21966 0.76631 1.01531 1.01430 1.21950 1.01603 0.99248 0.92745 1.21090 0.91326 1.01347 0.95950 0.89675 1.21844 1.01377 0.99061 0.97830 1.21602 0.96795 0.98673 0.93886 0.92400 1.20896 0.83748 0.97313 0.94910 1.42562 1.05288 1.77525 1.13225 1.19566 0.91052 1.34586 0.92567 0.90770 1.25468 0.98276 1.02504 0.99821 1.69826 1.12370 1.51010 1.27767 0.85249 0.78080 0.77744 0.79318 1.21744 1.22139 1.19601 1.21570 0.95027 0.99943 0.82464 1.68192 1.09509 1.27919 1.08546 1.22754 0.89645 0.98669 0.96678 1.20892 1.00049 0.90074 1.04369 0.89783 0.89587 0.86356 0.88127 0.89426 0.91029 0.89196 0.89066 0.92172 0.87133 0.92895 0.90357 0.93350 0.95920 0.94651 0.79985 0.94213 0.93032 0.90759 0.89596 0.86657 0.89636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.41 9.78 71.24 0.70 -1.72 16 2 C 0.10 3.25 6.79 42.63 0.29 3.54 16 3 N -0.45 -16.84 10.34 -170.48 -1.76 -18.61 16 4 C 0.10 3.79 6.82 42.81 0.29 4.08 16 5 C -0.10 -2.99 9.89 71.24 0.70 -2.29 16 6 C 0.02 0.65 4.48 41.89 0.19 0.84 16 7 C 0.59 20.97 5.72 86.88 0.50 21.46 16 8 O -0.55 -21.25 16.52 -3.78 -0.06 -21.31 16 9 N -0.59 -17.91 2.97 -821.96 -2.44 -20.35 16 10 C 0.10 2.39 6.44 86.36 0.56 2.95 16 11 C -0.12 -2.24 5.36 30.67 0.16 -2.08 16 12 C -0.08 -1.74 2.23 -10.76 -0.02 -1.76 16 13 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 14 C -0.14 -2.96 8.82 71.98 0.63 -2.33 16 15 C -0.09 -2.80 1.92 -10.72 -0.02 -2.82 16 16 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 17 C 0.16 6.03 5.41 86.38 0.47 6.50 16 18 N -0.74 -37.09 5.38 -343.44 -1.85 -38.94 16 19 C -0.25 -13.49 9.99 84.04 0.84 -12.65 16 20 H 0.07 3.92 7.83 -2.91 -0.02 3.89 16 21 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 22 N -0.96 -57.39 13.06 21.65 0.28 -57.10 16 23 Si 0.97 45.42 29.55 68.60 2.03 47.44 16 24 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 26 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 27 C 0.13 4.42 5.40 86.36 0.47 4.88 16 28 N -0.43 -15.50 10.34 -172.54 -1.78 -17.28 16 29 C 0.07 2.12 6.79 42.68 0.29 2.41 16 30 C -0.10 -2.13 9.78 71.23 0.70 -1.44 16 31 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.12 1.84 5.94 -2.39 -0.01 1.83 16 34 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 35 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.07 2.22 6.90 -2.39 -0.02 2.20 16 37 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 38 H 0.09 2.17 7.00 -2.39 -0.02 2.15 16 39 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.22 6.30 -2.39 -0.02 1.21 16 42 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 43 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.02 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.04 1.34 6.15 -2.39 -0.01 1.32 16 46 H 0.37 20.04 6.89 -92.71 -0.64 19.40 16 47 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 48 H 0.05 2.11 5.56 -2.39 -0.01 2.09 16 49 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 50 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.12 1.71 5.94 -2.39 -0.01 1.70 16 52 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -72.89 409.56 1.91 -70.98 By element: Atomic # 1 Polarization: 38.65 SS G_CDS: 0.29 Total: 38.95 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: 7.21 Total: 16.23 kcal Atomic # 7 Polarization: -144.73 SS G_CDS: -7.55 Total: -152.29 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.06 Total: -21.31 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -72.89 1.91 -70.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132965858.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.968 kcal (2) G-P(sol) polarization free energy of solvation -72.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds