Wall clock time and date at job start Wed Apr 1 2020 04:20:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32136 * 119.90513 * 2 1 4 4 C 1.32081 * 120.07399 * 179.75129 * 3 2 1 5 5 C 1.50703 * 120.06156 * 180.25292 * 4 3 2 6 6 C 1.39439 * 119.87342 * 0.51690 * 4 3 2 7 7 C 1.48147 * 120.09951 * 179.75503 * 6 4 3 8 8 O 1.21510 * 120.00501 * 284.36052 * 7 6 4 9 9 N 1.34780 * 119.99548 * 104.35436 * 7 6 4 10 10 C 1.46921 * 120.63302 * 354.95781 * 9 7 6 11 11 C 1.53193 * 108.77383 * 233.58226 * 10 9 7 12 12 C 1.53036 * 109.31532 * 305.36605 * 11 10 9 13 13 H 1.09002 * 109.46180 * 301.34417 * 12 11 10 14 14 C 1.53006 * 109.46177 * 181.38746 * 12 11 10 15 15 C 1.53043 * 109.53984 * 61.36310 * 12 11 10 16 16 H 1.09005 * 109.49267 * 58.58512 * 15 12 11 17 17 C 1.52996 * 109.49871 * 178.68268 * 15 12 11 18 18 N 1.46500 * 109.47208 * 184.83973 * 17 15 12 19 19 C 1.36932 * 120.00179 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99924 * 0.02562 * 19 18 17 21 21 C 1.38815 * 120.00007 * 179.97438 * 19 18 17 22 22 N 1.31615 * 119.99704 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00044 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47111 * 89.99493 * 23 21 19 25 25 H 1.48500 * 109.46993 * 209.99656 * 23 21 19 26 26 H 1.48499 * 109.46980 * 329.99614 * 23 21 19 27 27 C 1.46929 * 120.62621 * 174.93414 * 9 7 6 28 28 N 1.33010 * 119.80057 * 359.47989 * 6 4 3 29 29 C 1.31790 * 119.93047 * 0.25364 * 28 6 4 30 30 C 1.50697 * 119.93650 * 179.97438 * 29 28 6 31 31 H 1.08995 * 109.47169 * 269.98291 * 1 2 3 32 32 H 1.08999 * 109.46844 * 29.98429 * 1 2 3 33 33 H 1.09007 * 109.46814 * 149.98316 * 1 2 3 34 34 H 1.09007 * 109.46763 * 275.09066 * 5 4 3 35 35 H 1.08996 * 109.47649 * 35.09215 * 5 4 3 36 36 H 1.08995 * 109.46655 * 155.09713 * 5 4 3 37 37 H 1.08993 * 109.59072 * 353.37211 * 10 9 7 38 38 H 1.09007 * 109.58924 * 113.65688 * 10 9 7 39 39 H 1.09002 * 109.49693 * 65.32214 * 11 10 9 40 40 H 1.09009 * 109.49734 * 185.41149 * 11 10 9 41 41 H 1.09004 * 109.46317 * 299.93226 * 14 12 11 42 42 H 1.09000 * 109.46935 * 59.93004 * 14 12 11 43 43 H 1.08995 * 109.47264 * 179.97438 * 14 12 11 44 44 H 1.09003 * 109.47446 * 304.84275 * 17 15 12 45 45 H 1.09004 * 109.47149 * 64.83801 * 17 15 12 46 46 H 0.96996 * 119.99475 * 359.97438 * 18 17 15 47 47 H 0.96999 * 119.99784 * 180.02562 * 22 21 19 48 48 H 1.08995 * 109.58942 * 6.61920 * 27 9 7 49 49 H 1.09007 * 109.69881 * 246.26959 * 27 9 7 50 50 H 1.09005 * 109.47346 * 90.00383 * 30 29 28 51 51 H 1.09002 * 109.47363 * 210.00163 * 30 29 28 52 52 H 1.08998 * 109.47546 * 330.00352 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1454 0.0000 4 6 3.4866 1.1493 0.0050 5 6 4.2376 2.4559 0.0107 6 6 4.1847 -0.0577 -0.0007 7 6 5.6662 -0.0592 -0.0007 8 8 6.2741 0.2060 -1.0188 9 7 6.3396 -0.3545 1.1288 10 6 5.6230 -0.5690 2.3934 11 6 6.2213 0.3520 3.4614 12 6 7.7308 0.1150 3.5464 13 1 7.9211 -0.9303 3.7898 14 6 8.3266 1.0084 4.6362 15 6 8.3782 0.4511 2.2010 16 1 8.1673 1.4895 1.9452 17 6 9.8912 0.2452 2.2968 18 7 10.5229 0.6765 1.0473 19 6 11.8811 0.5849 0.8994 20 1 12.4867 0.1943 1.7039 21 6 12.4795 0.9931 -0.2847 22 7 13.7849 0.9046 -0.4269 23 14 11.4319 1.6681 -1.6763 24 1 11.2984 3.1394 -1.5266 25 1 12.0785 1.3595 -2.9771 26 1 10.0862 1.0418 -1.6315 27 6 7.8045 -0.4687 1.1187 28 7 3.5165 -1.2078 -0.0006 29 6 2.1986 -1.2026 -0.0002 30 6 1.4415 -2.5056 -0.0007 31 1 -0.3633 -0.0003 1.0276 32 1 -0.3633 0.8901 -0.5136 33 1 -0.3633 -0.8899 -0.5141 34 1 4.3435 2.8186 -1.0118 35 1 3.6876 3.1886 0.6011 36 1 5.2251 2.3053 0.4468 37 1 4.5670 -0.3352 2.2591 38 1 5.7306 -1.6087 2.7026 39 1 6.0307 1.3913 3.1937 40 1 5.7639 0.1348 4.4268 41 1 8.1369 2.0539 4.3928 42 1 7.8655 0.7691 5.5945 43 1 9.4016 0.8394 4.6972 44 1 10.2863 0.8331 3.1254 45 1 10.1043 -0.8103 2.4662 46 1 9.9788 1.0263 0.3245 47 1 14.2031 1.1902 -1.2543 48 1 8.1877 -0.1688 0.1434 49 1 8.0941 -1.4993 1.3239 50 1 1.2592 -2.8203 1.0269 51 1 0.4893 -2.3724 -0.5142 52 1 2.0282 -3.2667 -0.5150 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132965859.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:54 Heat of formation + Delta-G solvation = -10.392150 kcal Electronic energy + Delta-G solvation = -31648.574772 eV Core-core repulsion = 27646.996016 eV Total energy + Delta-G solvation = -4001.578755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.75482 -41.23369 -39.33245 -36.84293 -36.17114 -35.61461 -35.03630 -33.74092 -31.97141 -31.41739 -30.20749 -29.24677 -27.93798 -26.90529 -25.00417 -24.65307 -24.23886 -23.13183 -22.62212 -21.52957 -20.49812 -19.69101 -19.35943 -18.54417 -17.68522 -16.75264 -16.56998 -16.44346 -16.16913 -15.96157 -15.65364 -15.47303 -15.03928 -14.75989 -14.68556 -14.62175 -14.40706 -14.27086 -14.21724 -14.02093 -13.90008 -13.68413 -13.46938 -13.42355 -13.32071 -13.13932 -12.86600 -12.82515 -12.72540 -12.69098 -12.52646 -12.29773 -12.07705 -11.93649 -11.91555 -11.85211 -11.61461 -11.33352 -11.22261 -10.99730 -10.27701 -9.98172 -9.86112 -9.30260 -8.06851 -5.38101 -0.63010 -0.13293 1.11391 1.31854 1.35625 1.41900 1.59344 2.30044 2.42559 2.74801 2.87271 3.18644 3.25387 3.29353 3.47105 3.65400 3.74181 3.75915 3.84880 3.90066 3.98652 4.05496 4.13768 4.27212 4.38129 4.42462 4.46930 4.51548 4.58878 4.65376 4.68599 4.70603 4.74308 4.75051 4.82070 4.86210 4.89450 4.95337 5.00715 5.01677 5.06533 5.07472 5.16782 5.18854 5.30938 5.43400 5.45566 5.53743 5.73778 6.02210 6.09525 6.18296 6.53267 6.75247 7.04411 7.82102 7.98352 9.14772 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013738 B = 0.003058 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.700114 B = 9154.757475 C =10173.045648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.102 3.898 3 N -0.448 5.448 4 C 0.108 3.892 5 C -0.102 4.102 6 C 0.025 3.975 7 C 0.578 3.422 8 O -0.569 6.569 9 N -0.589 5.589 10 C 0.112 3.888 11 C -0.119 4.119 12 C -0.077 4.077 13 H 0.086 0.914 14 C -0.146 4.146 15 C -0.093 4.093 16 H 0.065 0.935 17 C 0.160 3.840 18 N -0.762 5.762 19 C -0.226 4.226 20 H 0.065 0.935 21 C -0.056 4.056 22 N -0.980 5.980 23 Si 0.941 3.059 24 H -0.277 1.277 25 H -0.294 1.294 26 H -0.268 1.268 27 C 0.121 3.879 28 N -0.429 5.429 29 C 0.072 3.928 30 C -0.100 4.100 31 H 0.108 0.892 32 H 0.082 0.918 33 H 0.113 0.887 34 H 0.085 0.915 35 H 0.107 0.893 36 H 0.065 0.935 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.111 0.889 41 H 0.050 0.950 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.044 0.956 45 H 0.030 0.970 46 H 0.361 0.639 47 H 0.258 0.742 48 H 0.059 0.941 49 H 0.081 0.919 50 H 0.105 0.895 51 H 0.115 0.885 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -35.455 -4.111 10.143 37.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.041 4.041 3 N -0.163 5.163 4 C -0.031 4.031 5 C -0.160 4.160 6 C -0.116 4.116 7 C 0.364 3.636 8 O -0.447 6.447 9 N -0.320 5.320 10 C -0.009 4.009 11 C -0.157 4.157 12 C -0.096 4.096 13 H 0.104 0.896 14 C -0.203 4.203 15 C -0.112 4.112 16 H 0.083 0.917 17 C 0.034 3.966 18 N -0.407 5.407 19 C -0.357 4.357 20 H 0.083 0.917 21 C -0.248 4.248 22 N -0.631 5.631 23 Si 0.769 3.231 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.193 1.193 27 C -0.001 4.001 28 N -0.145 5.145 29 C -0.072 4.072 30 C -0.157 4.157 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.131 0.869 34 H 0.104 0.896 35 H 0.125 0.875 36 H 0.084 0.916 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.083 0.917 40 H 0.129 0.871 41 H 0.069 0.931 42 H 0.096 0.904 43 H 0.070 0.930 44 H 0.061 0.939 45 H 0.048 0.952 46 H 0.194 0.806 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.099 0.901 50 H 0.124 0.876 51 H 0.133 0.867 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -34.855 -4.007 9.699 36.401 hybrid contribution 0.679 0.520 -1.586 1.802 sum -34.176 -3.487 8.113 35.299 Atomic orbital electron populations 1.21029 0.83902 1.05654 1.05465 1.23150 1.00608 0.88008 0.92350 1.68308 1.06869 1.30067 1.11084 1.22255 0.90723 0.95838 0.94308 1.20758 0.98670 0.92148 1.04388 1.21496 0.94328 0.91428 1.04325 1.18090 0.86030 0.76110 0.83413 1.90826 1.69528 1.50266 1.34113 1.48121 1.07337 1.67450 1.09114 1.21924 0.95481 1.01458 0.82067 1.21975 0.94753 0.99555 0.99408 1.21068 0.94558 1.01375 0.92600 0.89613 1.21857 1.00949 0.99194 0.98269 1.21648 0.94331 0.99158 0.96084 0.91689 1.20918 0.90396 0.97581 0.87738 1.42873 1.03729 1.78236 1.15905 1.19065 0.83430 1.33632 0.99621 0.91658 1.25320 0.96398 1.02851 1.00238 1.69843 1.09838 1.55836 1.27549 0.85624 0.78794 0.78880 0.79780 1.20261 1.22023 1.19309 1.21634 0.77843 1.00539 1.00117 1.68245 1.09987 1.27766 1.08532 1.22896 0.89101 0.99004 0.96226 1.20966 0.99768 0.89681 1.05316 0.87389 0.89930 0.86898 0.89618 0.87464 0.91562 0.90603 0.89301 0.91707 0.87116 0.93054 0.90359 0.92975 0.93862 0.95222 0.80624 0.93322 0.92228 0.90115 0.87620 0.86693 0.90822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.61 9.78 71.24 0.70 0.09 16 2 C 0.10 1.62 6.79 42.63 0.29 1.91 16 3 N -0.45 -9.59 10.34 -170.47 -1.76 -11.35 16 4 C 0.11 2.66 6.82 42.81 0.29 2.95 16 5 C -0.10 -2.27 9.89 71.24 0.70 -1.57 16 6 C 0.02 0.69 4.48 41.89 0.19 0.87 16 7 C 0.58 19.25 5.73 86.88 0.50 19.75 16 8 O -0.57 -24.30 16.52 -3.75 -0.06 -24.37 16 9 N -0.59 -16.66 2.97 -821.98 -2.44 -19.10 16 10 C 0.11 2.16 6.32 86.36 0.55 2.71 16 11 C -0.12 -1.91 5.36 30.67 0.16 -1.74 16 12 C -0.08 -1.56 2.23 -10.77 -0.02 -1.59 16 13 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 14 C -0.15 -2.77 8.82 71.98 0.63 -2.13 16 15 C -0.09 -2.74 1.92 -10.72 -0.02 -2.76 16 16 H 0.06 2.08 8.14 -2.38 -0.02 2.06 16 17 C 0.16 6.01 5.41 86.38 0.47 6.48 16 18 N -0.76 -37.37 5.18 -343.45 -1.78 -39.15 16 19 C -0.23 -13.35 10.47 84.04 0.88 -12.47 16 20 H 0.07 4.12 8.06 -2.91 -0.02 4.09 16 21 C -0.06 -3.47 5.50 84.86 0.47 -3.00 16 22 N -0.98 -64.72 13.97 21.65 0.30 -64.42 16 23 Si 0.94 49.60 27.74 68.60 1.90 51.51 16 24 H -0.28 -14.11 7.11 99.48 0.71 -13.41 16 25 H -0.29 -15.53 7.11 99.48 0.71 -14.82 16 26 H -0.27 -13.78 6.52 99.48 0.65 -13.13 16 27 C 0.12 3.93 5.53 86.36 0.48 4.41 16 28 N -0.43 -10.70 10.33 -172.53 -1.78 -12.49 16 29 C 0.07 1.24 6.79 42.68 0.29 1.53 16 30 C -0.10 -0.79 9.78 71.23 0.70 -0.09 16 31 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 32 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.11 0.06 5.94 -2.38 -0.01 0.05 16 34 H 0.09 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.07 1.62 6.90 -2.39 -0.02 1.61 16 37 H 0.08 1.42 6.35 -2.39 -0.02 1.40 16 38 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 39 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.11 1.12 8.14 -2.38 -0.02 1.11 16 41 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.05 1.16 6.30 -2.39 -0.02 1.15 16 44 H 0.04 1.61 6.15 -2.39 -0.01 1.59 16 45 H 0.03 1.12 8.14 -2.38 -0.02 1.10 16 46 H 0.36 17.85 4.75 -92.71 -0.44 17.41 16 47 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 48 H 0.06 2.45 6.20 -2.39 -0.01 2.44 16 49 H 0.08 2.49 8.14 -2.38 -0.02 2.47 16 50 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 51 H 0.11 0.19 5.94 -2.39 -0.01 0.17 16 52 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -83.32 406.43 2.05 -81.27 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.43 Total: 22.76 kcal Atomic # 6 Polarization: 8.10 SS G_CDS: 7.25 Total: 15.35 kcal Atomic # 7 Polarization: -139.04 SS G_CDS: -7.47 Total: -146.51 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.06 Total: -24.37 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 1.90 Total: 51.51 kcal Total: -83.32 2.05 -81.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132965859.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.875 kcal (2) G-P(sol) polarization free energy of solvation -83.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds