Wall clock time and date at job start Wed Apr 1 2020 03:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30832 * 125.89453 * 2 1 4 4 N 1.40085 * 108.20223 * 180.02562 * 3 2 1 5 5 H 0.96999 * 126.03766 * 179.97438 * 4 3 2 6 6 C 1.34950 * 107.92701 * 359.75963 * 4 3 2 7 7 C 1.50701 * 126.12859 * 180.23885 * 6 4 3 8 8 C 1.35315 * 107.74456 * 0.38780 * 6 4 3 9 9 C 1.50697 * 126.04118 * 179.86763 * 8 6 4 10 10 H 1.09003 * 109.47032 * 4.15785 * 9 8 6 11 11 C 1.52995 * 109.47484 * 244.15153 * 9 8 6 12 12 C 1.50705 * 109.46811 * 124.14977 * 9 8 6 13 13 O 1.21277 * 120.00004 * 0.02562 * 12 9 8 14 14 N 1.34778 * 120.00072 * 179.72771 * 12 9 8 15 15 C 1.46494 * 120.00168 * 180.27944 * 14 12 9 16 16 C 1.52999 * 109.47183 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47084 * 179.97438 * 16 15 14 18 18 C 1.29460 * 117.69446 * 95.00083 * 17 16 15 19 19 C 1.50320 * 123.65095 * 180.85676 * 18 17 16 20 20 N 1.47008 * 109.16836 * 349.02547 * 19 18 17 21 21 C 1.36940 * 121.37393 * 222.97143 * 20 19 18 22 22 H 1.07996 * 119.99759 * 158.50618 * 21 20 19 23 23 C 1.38812 * 119.99581 * 338.50482 * 21 20 19 24 24 N 1.31623 * 120.00369 * 342.39039 * 23 21 20 25 25 Si 1.86802 * 119.99739 * 162.38961 * 23 21 20 26 26 H 1.48506 * 109.46987 * 89.99902 * 25 23 21 27 27 H 1.48500 * 109.47325 * 209.99893 * 25 23 21 28 28 H 1.48498 * 109.47232 * 330.00276 * 25 23 21 29 29 C 1.47338 * 117.25223 * 42.94467 * 20 19 18 30 30 C 1.49975 * 117.69740 * 274.73926 * 17 16 15 31 31 H 1.08996 * 109.46844 * 275.22111 * 1 2 3 32 32 H 1.08993 * 109.47583 * 35.22546 * 1 2 3 33 33 H 1.08997 * 109.46996 * 155.22629 * 1 2 3 34 34 H 1.09000 * 109.46859 * 270.17691 * 7 6 4 35 35 H 1.08999 * 109.46997 * 30.17611 * 7 6 4 36 36 H 1.09001 * 109.47005 * 150.17585 * 7 6 4 37 37 H 1.09007 * 109.46781 * 173.41276 * 11 9 8 38 38 H 1.09003 * 109.47159 * 293.41277 * 11 9 8 39 39 H 1.09004 * 109.47102 * 53.41711 * 11 9 8 40 40 H 0.97003 * 119.99798 * 0.27784 * 14 12 9 41 41 H 1.09006 * 109.47010 * 299.99726 * 15 14 12 42 42 H 1.08997 * 109.47538 * 59.99689 * 15 14 12 43 43 H 1.08998 * 109.47188 * 300.00076 * 16 15 14 44 44 H 1.09000 * 109.46897 * 60.00194 * 16 15 14 45 45 H 1.07997 * 118.16697 * 0.88193 * 18 17 16 46 46 H 1.09003 * 109.51991 * 108.92750 * 19 18 17 47 47 H 1.09004 * 109.52133 * 229.11404 * 19 18 17 48 48 H 0.97002 * 119.99591 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.77765 * 57.80711 * 29 20 19 50 50 H 1.08994 * 109.78155 * 178.62103 * 29 20 19 51 51 H 1.08997 * 109.31244 * 281.29383 * 30 17 16 52 52 H 1.09003 * 109.31060 * 40.71612 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3907 1.2080 -0.0011 6 6 3.6142 -0.7153 0.0044 7 6 4.8351 -1.5989 0.0108 8 6 2.3272 -1.1330 -0.0006 9 6 1.8600 -2.5658 -0.0005 10 1 2.7215 -3.2288 0.0788 11 6 1.1097 -2.8577 -1.3015 12 6 0.9407 -2.7942 1.1717 13 8 0.6894 -1.8832 1.9317 14 7 0.3932 -4.0094 1.3719 15 6 -0.5052 -4.2299 2.5078 16 6 -0.9844 -5.6829 2.5045 17 6 -1.9081 -5.9099 3.6734 18 6 -3.1810 -5.8000 3.4645 19 6 -4.2195 -5.9796 4.5364 20 7 -3.5828 -6.5428 5.7358 21 6 -4.1768 -7.5464 6.4537 22 1 -3.5800 -8.1768 7.0961 23 6 -5.5459 -7.7532 6.3556 24 7 -6.3213 -6.8073 5.8692 25 14 -6.2879 -9.3741 6.9138 26 1 -6.6557 -9.2817 8.3497 27 1 -7.5018 -9.6658 6.1097 28 1 -5.2962 -10.4633 6.7260 29 6 -2.2791 -5.9834 6.1334 30 6 -1.2882 -6.2530 4.9952 31 1 -0.3633 0.0935 1.0234 32 1 -0.3634 0.8394 -0.5927 33 1 -0.3633 -0.9331 -0.4306 34 1 5.1338 -1.8131 -1.0153 35 1 5.6489 -1.0902 0.5275 36 1 4.6054 -2.5322 0.5248 37 1 0.8739 -3.9207 -1.3543 38 1 0.1863 -2.2790 -1.3261 39 1 1.7344 -2.5815 -2.1510 40 1 0.5940 -4.7380 0.7637 41 1 0.0266 -4.0244 3.4368 42 1 -1.3644 -3.5642 2.4261 43 1 -1.5163 -5.8880 1.5754 44 1 -0.1254 -6.3489 2.5860 45 1 -3.5152 -5.5666 2.4645 46 1 -4.6633 -5.0141 4.7790 47 1 -4.9947 -6.6592 4.1822 48 1 -7.2780 -6.9518 5.8010 49 1 -2.3732 -4.9102 6.2988 50 1 -1.9320 -6.4689 7.0454 51 1 -1.0071 -7.3061 4.9990 52 1 -0.3965 -5.6442 5.1441 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161485839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:07 Heat of formation + Delta-G solvation = 59.705737 kcal Electronic energy + Delta-G solvation = -30167.488027 eV Core-core repulsion = 26168.948944 eV Total energy + Delta-G solvation = -3998.539083 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.73410 -39.66610 -37.87935 -35.41418 -34.56932 -33.64267 -33.40438 -31.40982 -30.59275 -29.77145 -28.57677 -28.19711 -27.05440 -25.54437 -24.34936 -22.96962 -22.42725 -20.96452 -20.77112 -20.37145 -19.31457 -17.80962 -17.57638 -16.69429 -16.15641 -15.70277 -15.61040 -15.28921 -15.00633 -14.69991 -14.17530 -13.91344 -13.89564 -13.76777 -13.58328 -13.56563 -13.29650 -13.22138 -12.82089 -12.65735 -12.62779 -12.48599 -12.32297 -12.13385 -11.96655 -11.88748 -11.62934 -11.50176 -11.37161 -10.96150 -10.89867 -10.68892 -10.55640 -10.30802 -10.22814 -9.80973 -9.74448 -9.50550 -9.37311 -9.03360 -8.62953 -8.60882 -7.88206 -6.73049 -5.76337 -3.12037 1.62417 2.48468 2.63108 2.65586 2.90170 3.31632 3.39560 3.46338 3.48791 4.29158 4.40330 4.51615 4.52295 4.66266 4.82010 4.88388 5.01526 5.05640 5.10498 5.15458 5.25638 5.31438 5.38431 5.41562 5.42864 5.50368 5.59661 5.62624 5.68456 5.78339 5.81453 5.84439 5.91299 6.00887 6.05543 6.10354 6.19738 6.24513 6.41980 6.44259 6.52559 6.58228 6.81385 6.93123 7.06920 7.26920 7.36113 7.43123 7.49050 7.53511 7.77080 7.92024 8.23816 8.40492 9.22973 9.86706 10.44245 11.34069 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025959 B = 0.001802 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.370230 B =15532.977519 C =15755.323621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.117 3.883 3 N -0.302 5.302 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.091 3.909 7 C -0.094 4.094 8 C -0.216 4.216 9 C -0.030 4.030 10 H 0.098 0.902 11 C -0.143 4.143 12 C 0.512 3.488 13 O -0.526 6.526 14 N -0.732 5.732 15 C 0.125 3.875 16 C -0.091 4.091 17 C -0.143 4.143 18 C -0.147 4.147 19 C 0.195 3.805 20 N -0.596 5.596 21 C -0.243 4.243 22 H 0.069 0.931 23 C -0.004 4.004 24 N -0.909 5.909 25 Si 0.903 3.097 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.281 1.281 29 C 0.143 3.857 30 C -0.091 4.091 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.397 0.603 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.037 0.963 47 H 0.093 0.907 48 H 0.253 0.747 49 H 0.024 0.976 50 H 0.055 0.945 51 H 0.062 0.938 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.908 8.621 -17.757 29.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.050 4.050 3 N -0.125 5.125 4 N -0.187 5.187 5 H 0.280 0.720 6 C -0.038 4.038 7 C -0.153 4.153 8 C -0.228 4.228 9 C -0.053 4.053 10 H 0.116 0.884 11 C -0.201 4.201 12 C 0.297 3.703 13 O -0.401 6.401 14 N -0.384 5.384 15 C 0.002 3.998 16 C -0.129 4.129 17 C -0.143 4.143 18 C -0.166 4.166 19 C 0.070 3.930 20 N -0.319 5.319 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.202 4.202 24 N -0.555 5.555 25 Si 0.733 3.267 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.206 1.206 29 C 0.016 3.984 30 C -0.130 4.130 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.100 0.900 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.231 0.769 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.055 0.945 47 H 0.111 0.889 48 H 0.063 0.937 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.081 0.919 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.542 10.543 -17.190 29.508 hybrid contribution 0.132 -1.713 -0.019 1.718 sum 21.674 8.831 -17.209 29.050 Atomic orbital electron populations 1.20314 0.86802 1.02350 1.03782 1.22069 0.96884 0.89704 0.96317 1.77311 0.86264 1.22255 1.26697 1.46075 1.07437 1.04566 1.60616 0.72036 1.20780 0.96595 0.85221 1.01208 1.20487 0.92966 0.98468 1.03362 1.19037 0.91185 0.94594 1.17968 1.19529 0.98107 0.93470 0.94148 0.88361 1.21859 1.00900 1.01773 0.95557 1.20571 0.80970 0.82371 0.86358 1.90716 1.60501 1.42126 1.46740 1.46121 1.49167 1.12288 1.30807 1.21400 0.93077 0.96761 0.88525 1.20902 0.99276 0.94686 0.98017 1.20233 0.94098 1.05111 0.94899 1.23107 0.95843 0.97716 0.99947 1.19736 0.91743 0.98014 0.83511 1.44168 1.18942 1.41657 1.27179 1.19184 0.90105 1.05717 1.22233 0.91334 1.24924 0.95995 0.98029 1.01243 1.70041 1.03768 1.30961 1.50706 0.86281 0.78561 0.83864 0.78013 1.21508 1.21597 1.20620 1.20982 0.86756 0.96180 0.94446 1.20787 0.97959 1.00228 0.94000 0.89442 0.91516 0.90861 0.90029 0.90953 0.89606 0.91832 0.91564 0.91439 0.76919 0.91477 0.91378 0.91576 0.91581 0.89064 0.94526 0.88895 0.93668 0.95803 0.92612 0.91948 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 8.83 36.01 0.32 -0.51 16 2 C 0.12 1.44 6.53 -82.40 -0.54 0.91 16 3 N -0.30 -3.85 12.70 33.67 0.43 -3.42 16 4 N -0.48 -4.47 7.36 33.48 0.25 -4.23 16 5 H 0.44 2.60 8.96 -182.61 -1.64 0.96 16 6 C 0.09 0.79 7.21 -82.26 -0.59 0.19 16 7 C -0.09 -0.43 10.09 36.01 0.36 -0.06 16 8 C -0.22 -2.24 4.43 -105.05 -0.47 -2.71 16 9 C -0.03 -0.25 2.85 -92.93 -0.26 -0.51 16 10 H 0.10 0.58 6.76 -51.93 -0.35 0.23 16 11 C -0.14 -0.91 8.87 37.16 0.33 -0.58 16 12 C 0.51 5.78 6.48 -10.98 -0.07 5.71 16 13 O -0.53 -8.17 13.58 5.56 0.08 -8.10 16 14 N -0.73 -7.16 5.46 -60.30 -0.33 -7.48 16 15 C 0.13 1.56 5.66 -4.05 -0.02 1.54 16 16 C -0.09 -1.14 5.32 -27.88 -0.15 -1.29 16 17 C -0.14 -2.43 5.11 -100.99 -0.52 -2.94 16 18 C -0.15 -2.82 9.47 -35.78 -0.34 -3.16 16 19 C 0.19 4.71 5.27 -5.10 -0.03 4.69 16 20 N -0.60 -15.17 3.01 -173.56 -0.52 -15.69 16 21 C -0.24 -6.72 9.72 -15.06 -0.15 -6.87 16 22 H 0.07 1.85 7.89 -52.49 -0.41 1.44 16 23 C 0.00 -0.12 4.98 -17.43 -0.09 -0.21 16 24 N -0.91 -26.46 11.03 55.49 0.61 -25.85 16 25 Si 0.90 21.80 29.59 -169.99 -5.03 16.77 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 29 C 0.14 3.04 6.59 -3.43 -0.02 3.01 16 30 C -0.09 -1.60 5.95 -28.08 -0.17 -1.77 16 31 H 0.09 1.13 7.45 -51.93 -0.39 0.75 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.73 5.03 -51.93 -0.26 0.47 16 34 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 0.36 7.08 -51.93 -0.37 -0.01 16 37 H 0.06 0.29 7.75 -51.92 -0.40 -0.11 16 38 H 0.07 0.49 5.65 -51.93 -0.29 0.19 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.40 2.69 8.01 -40.82 -0.33 2.37 16 41 H 0.07 0.94 8.11 -51.93 -0.42 0.52 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 44 H 0.07 0.75 8.11 -51.93 -0.42 0.32 16 45 H 0.09 1.55 7.73 -52.49 -0.41 1.14 16 46 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 47 H 0.09 2.49 6.28 -51.93 -0.33 2.16 16 48 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 49 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 51 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.05 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 409.51 15.07 6.17 6.17 Total: -1.00 -34.92 409.51 -10.52 -45.44 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: -9.77 Total: 0.95 kcal Atomic # 6 Polarization: -2.17 SS G_CDS: -2.40 Total: -4.57 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: 0.43 Total: -56.67 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.08 Total: -8.10 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.92 -10.52 -45.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161485839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.144 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds