Wall clock time and date at job start Wed Apr 1 2020 03:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30832 * 125.89453 * 2 1 4 4 N 1.40085 * 108.20223 * 180.02562 * 3 2 1 5 5 H 0.96999 * 126.03766 * 179.97438 * 4 3 2 6 6 C 1.34950 * 107.92701 * 359.75963 * 4 3 2 7 7 C 1.50701 * 126.12859 * 180.23885 * 6 4 3 8 8 C 1.35315 * 107.74456 * 0.38780 * 6 4 3 9 9 C 1.50697 * 126.04118 * 179.86763 * 8 6 4 10 10 H 1.09003 * 109.47032 * 4.15785 * 9 8 6 11 11 C 1.52995 * 109.47484 * 244.15153 * 9 8 6 12 12 C 1.50705 * 109.46811 * 124.14977 * 9 8 6 13 13 O 1.21277 * 120.00004 * 0.02562 * 12 9 8 14 14 N 1.34778 * 120.00072 * 179.72771 * 12 9 8 15 15 C 1.46494 * 120.00168 * 180.27944 * 14 12 9 16 16 C 1.52999 * 109.47183 * 179.97438 * 15 14 12 17 17 C 1.50700 * 109.47084 * 179.97438 * 16 15 14 18 18 C 1.29460 * 117.69446 * 95.00083 * 17 16 15 19 19 C 1.50320 * 123.65095 * 180.85676 * 18 17 16 20 20 N 1.47008 * 109.16836 * 349.02547 * 19 18 17 21 21 C 1.36940 * 121.37393 * 222.97143 * 20 19 18 22 22 H 1.07996 * 119.99759 * 158.50618 * 21 20 19 23 23 C 1.38812 * 119.99581 * 338.50482 * 21 20 19 24 24 N 1.31623 * 120.00369 * 342.39039 * 23 21 20 25 25 Si 1.86802 * 119.99739 * 162.38961 * 23 21 20 26 26 H 1.48506 * 109.46987 * 89.99902 * 25 23 21 27 27 H 1.48500 * 109.47325 * 209.99893 * 25 23 21 28 28 H 1.48498 * 109.47232 * 330.00276 * 25 23 21 29 29 C 1.47338 * 117.25223 * 42.94467 * 20 19 18 30 30 C 1.49975 * 117.69740 * 274.73926 * 17 16 15 31 31 H 1.08996 * 109.46844 * 275.22111 * 1 2 3 32 32 H 1.08993 * 109.47583 * 35.22546 * 1 2 3 33 33 H 1.08997 * 109.46996 * 155.22629 * 1 2 3 34 34 H 1.09000 * 109.46859 * 270.17691 * 7 6 4 35 35 H 1.08999 * 109.46997 * 30.17611 * 7 6 4 36 36 H 1.09001 * 109.47005 * 150.17585 * 7 6 4 37 37 H 1.09007 * 109.46781 * 173.41276 * 11 9 8 38 38 H 1.09003 * 109.47159 * 293.41277 * 11 9 8 39 39 H 1.09004 * 109.47102 * 53.41711 * 11 9 8 40 40 H 0.97003 * 119.99798 * 0.27784 * 14 12 9 41 41 H 1.09006 * 109.47010 * 299.99726 * 15 14 12 42 42 H 1.08997 * 109.47538 * 59.99689 * 15 14 12 43 43 H 1.08998 * 109.47188 * 300.00076 * 16 15 14 44 44 H 1.09000 * 109.46897 * 60.00194 * 16 15 14 45 45 H 1.07997 * 118.16697 * 0.88193 * 18 17 16 46 46 H 1.09003 * 109.51991 * 108.92750 * 19 18 17 47 47 H 1.09004 * 109.52133 * 229.11404 * 19 18 17 48 48 H 0.97002 * 119.99591 * 180.02562 * 24 23 21 49 49 H 1.08997 * 109.77765 * 57.80711 * 29 20 19 50 50 H 1.08994 * 109.78155 * 178.62103 * 29 20 19 51 51 H 1.08997 * 109.31244 * 281.29383 * 30 17 16 52 52 H 1.09003 * 109.31060 * 40.71612 * 30 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6087 0.6341 -0.0006 5 1 4.3907 1.2080 -0.0011 6 6 3.6142 -0.7153 0.0044 7 6 4.8351 -1.5989 0.0108 8 6 2.3272 -1.1330 -0.0006 9 6 1.8600 -2.5658 -0.0005 10 1 2.7215 -3.2288 0.0788 11 6 1.1097 -2.8577 -1.3015 12 6 0.9407 -2.7942 1.1717 13 8 0.6894 -1.8832 1.9317 14 7 0.3932 -4.0094 1.3719 15 6 -0.5052 -4.2299 2.5078 16 6 -0.9844 -5.6829 2.5045 17 6 -1.9081 -5.9099 3.6734 18 6 -3.1810 -5.8000 3.4645 19 6 -4.2195 -5.9796 4.5364 20 7 -3.5828 -6.5428 5.7358 21 6 -4.1768 -7.5464 6.4537 22 1 -3.5800 -8.1768 7.0961 23 6 -5.5459 -7.7532 6.3556 24 7 -6.3213 -6.8073 5.8692 25 14 -6.2879 -9.3741 6.9138 26 1 -6.6557 -9.2817 8.3497 27 1 -7.5018 -9.6658 6.1097 28 1 -5.2962 -10.4633 6.7260 29 6 -2.2791 -5.9834 6.1334 30 6 -1.2882 -6.2530 4.9952 31 1 -0.3633 0.0935 1.0234 32 1 -0.3634 0.8394 -0.5927 33 1 -0.3633 -0.9331 -0.4306 34 1 5.1338 -1.8131 -1.0153 35 1 5.6489 -1.0902 0.5275 36 1 4.6054 -2.5322 0.5248 37 1 0.8739 -3.9207 -1.3543 38 1 0.1863 -2.2790 -1.3261 39 1 1.7344 -2.5815 -2.1510 40 1 0.5940 -4.7380 0.7637 41 1 0.0266 -4.0244 3.4368 42 1 -1.3644 -3.5642 2.4261 43 1 -1.5163 -5.8880 1.5754 44 1 -0.1254 -6.3489 2.5860 45 1 -3.5152 -5.5666 2.4645 46 1 -4.6633 -5.0141 4.7790 47 1 -4.9947 -6.6592 4.1822 48 1 -7.2780 -6.9518 5.8010 49 1 -2.3732 -4.9102 6.2988 50 1 -1.9320 -6.4689 7.0454 51 1 -1.0071 -7.3061 4.9990 52 1 -0.3965 -5.6442 5.1441 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161485839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:06 Heat of formation + Delta-G solvation = 36.361023 kcal Electronic energy + Delta-G solvation = -30168.500330 eV Core-core repulsion = 26168.948944 eV Total energy + Delta-G solvation = -3999.551386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.45748 -40.56150 -39.42581 -36.68853 -35.31508 -34.99432 -34.23442 -33.09909 -31.52396 -31.23976 -29.93905 -28.97717 -27.64925 -27.13747 -25.31397 -24.50652 -23.80687 -22.43559 -21.69499 -21.11929 -20.08634 -19.44346 -18.55002 -17.69344 -17.29364 -17.01575 -16.73156 -16.48155 -16.05876 -15.76420 -15.62159 -15.21976 -15.19411 -14.78486 -14.65140 -14.56336 -14.27755 -14.12421 -13.86121 -13.66975 -13.55146 -13.34746 -13.27847 -13.20898 -13.03173 -12.93609 -12.79282 -12.76894 -12.55060 -12.49904 -12.28433 -12.19646 -12.16558 -11.83837 -11.64198 -11.29851 -11.20500 -10.66379 -10.62566 -10.16011 -9.95471 -9.45615 -9.30388 -8.77355 -7.87244 -5.26485 0.93478 1.45151 1.47231 1.48495 1.58564 1.70403 1.81753 2.01591 2.45834 2.52136 3.28871 3.67436 3.68898 3.78045 3.84075 4.01258 4.13189 4.16615 4.20328 4.28997 4.34226 4.37482 4.47222 4.49922 4.57933 4.62753 4.72348 4.74109 4.78946 4.88573 4.89898 4.93647 4.96329 5.02056 5.02656 5.12930 5.15941 5.18654 5.22161 5.25851 5.27331 5.42639 5.44456 5.51926 5.57077 5.61729 5.75518 5.91602 6.31594 6.33918 6.49537 6.73394 6.77720 7.13626 7.44688 7.84612 8.38521 9.21462 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025959 B = 0.001802 C = 0.001777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.370230 B =15532.977519 C =15755.323621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.095 3.905 3 N -0.345 5.345 4 N -0.475 5.475 5 H 0.448 0.552 6 C 0.100 3.900 7 C -0.093 4.093 8 C -0.240 4.240 9 C -0.021 4.021 10 H 0.131 0.869 11 C -0.141 4.141 12 C 0.509 3.491 13 O -0.574 6.574 14 N -0.716 5.716 15 C 0.135 3.865 16 C -0.078 4.078 17 C -0.120 4.120 18 C -0.176 4.176 19 C 0.205 3.795 20 N -0.616 5.616 21 C -0.256 4.256 22 H 0.073 0.927 23 C -0.060 4.060 24 N -0.942 5.942 25 Si 0.971 3.029 26 H -0.286 1.286 27 H -0.293 1.293 28 H -0.269 1.269 29 C 0.135 3.865 30 C -0.086 4.086 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.050 0.950 39 H 0.077 0.923 40 H 0.416 0.584 41 H 0.053 0.947 42 H 0.045 0.955 43 H 0.085 0.915 44 H 0.094 0.906 45 H 0.114 0.886 46 H -0.001 1.001 47 H 0.058 0.942 48 H 0.249 0.751 49 H 0.016 0.984 50 H 0.058 0.942 51 H 0.070 0.930 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.439 6.515 -19.547 32.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.071 4.071 3 N -0.169 5.169 4 N -0.185 5.185 5 H 0.294 0.706 6 C -0.030 4.030 7 C -0.151 4.151 8 C -0.251 4.251 9 C -0.043 4.043 10 H 0.148 0.852 11 C -0.198 4.198 12 C 0.296 3.704 13 O -0.453 6.453 14 N -0.369 5.369 15 C 0.011 3.989 16 C -0.115 4.115 17 C -0.121 4.121 18 C -0.195 4.195 19 C 0.080 3.920 20 N -0.340 5.340 21 C -0.386 4.386 22 H 0.090 0.910 23 C -0.254 4.254 24 N -0.589 5.589 25 Si 0.799 3.201 26 H -0.213 1.213 27 H -0.219 1.219 28 H -0.194 1.194 29 C 0.009 3.991 30 C -0.125 4.125 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.104 0.896 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.069 0.931 39 H 0.096 0.904 40 H 0.254 0.746 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.112 0.888 45 H 0.131 0.869 46 H 0.017 0.983 47 H 0.076 0.924 48 H 0.058 0.942 49 H 0.034 0.966 50 H 0.077 0.923 51 H 0.088 0.912 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 25.120 8.418 -19.006 32.605 hybrid contribution -0.848 -0.977 0.608 1.430 sum 24.272 7.441 -18.398 31.352 Atomic orbital electron populations 1.20238 0.87105 1.03115 1.02278 1.22295 0.97192 0.90755 0.96860 1.77207 0.87929 1.23380 1.28413 1.46132 1.06868 1.05418 1.60036 0.70604 1.21459 0.97649 0.85097 0.98784 1.20672 0.91325 0.97947 1.05147 1.19367 0.91610 0.95202 1.18968 1.19580 0.98512 0.92881 0.93314 0.85176 1.21873 1.00116 1.03055 0.94766 1.21196 0.80760 0.81847 0.86556 1.90713 1.62209 1.43709 1.48655 1.45896 1.48115 1.12677 1.30212 1.21078 0.92625 0.96166 0.89043 1.20800 0.99236 0.94975 0.96494 1.20610 0.94087 1.01121 0.96262 1.22807 0.95657 1.01578 0.99474 1.19386 0.92668 0.95187 0.84796 1.44468 1.20202 1.41687 1.27619 1.19551 0.90539 1.06313 1.22167 0.90970 1.25750 0.96493 1.01147 1.02046 1.70222 1.03619 1.32782 1.52266 0.85221 0.77572 0.80041 0.77298 1.21264 1.21889 1.19398 1.21188 0.86005 0.95488 0.96399 1.20740 0.97825 1.01314 0.92614 0.91978 0.91014 0.89886 0.87767 0.89550 0.88617 0.89412 0.93137 0.90415 0.74637 0.92877 0.93679 0.89694 0.88800 0.86850 0.98299 0.92384 0.94178 0.96612 0.92295 0.91187 0.89718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.63 8.83 71.24 0.63 -1.00 16 2 C 0.09 2.36 6.53 43.10 0.28 2.64 16 3 N -0.35 -8.94 12.70 -47.38 -0.60 -9.54 16 4 N -0.48 -8.39 7.36 -48.00 -0.35 -8.75 16 5 H 0.45 4.84 8.96 -213.33 -1.91 2.93 16 6 C 0.10 1.50 7.21 41.41 0.30 1.80 16 7 C -0.09 -0.47 10.09 71.24 0.72 0.25 16 8 C -0.24 -4.60 4.43 -20.14 -0.09 -4.69 16 9 C -0.02 -0.28 2.85 -12.29 -0.03 -0.31 16 10 H 0.13 0.92 6.76 -2.39 -0.02 0.91 16 11 C -0.14 -1.34 8.87 71.98 0.64 -0.70 16 12 C 0.51 10.52 6.48 87.66 0.57 11.09 16 13 O -0.57 -17.83 13.58 -3.02 -0.04 -17.87 16 14 N -0.72 -11.74 5.46 -463.07 -2.53 -14.27 16 15 C 0.14 3.05 5.66 86.38 0.49 3.54 16 16 C -0.08 -1.64 5.32 29.85 0.16 -1.48 16 17 C -0.12 -3.84 5.11 -15.14 -0.08 -3.91 16 18 C -0.18 -6.76 9.47 27.10 0.26 -6.50 16 19 C 0.20 10.37 5.27 85.42 0.45 10.82 16 20 N -0.62 -32.09 3.01 -703.04 -2.12 -34.21 16 21 C -0.26 -14.41 9.72 84.03 0.82 -13.59 16 22 H 0.07 3.91 7.89 -2.91 -0.02 3.89 16 23 C -0.06 -3.43 4.98 84.86 0.42 -3.01 16 24 N -0.94 -57.13 11.03 21.65 0.24 -56.89 16 25 Si 0.97 45.58 29.59 68.60 2.03 47.61 16 26 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 27 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 28 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 29 C 0.13 5.71 6.59 86.32 0.57 6.28 16 30 C -0.09 -2.84 5.95 29.72 0.18 -2.67 16 31 H 0.06 1.76 7.45 -2.39 -0.02 1.74 16 32 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 33 H 0.08 1.71 5.03 -2.39 -0.01 1.70 16 34 H 0.10 0.13 8.14 -2.39 -0.02 0.11 16 35 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.10 0.35 7.08 -2.39 -0.02 0.33 16 37 H 0.09 0.41 7.75 -2.38 -0.02 0.39 16 38 H 0.05 0.65 5.65 -2.39 -0.01 0.64 16 39 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 40 H 0.42 3.67 8.01 -92.71 -0.74 2.93 16 41 H 0.05 1.37 8.11 -2.38 -0.02 1.35 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.08 1.57 7.78 -2.39 -0.02 1.56 16 44 H 0.09 1.58 8.11 -2.39 -0.02 1.56 16 45 H 0.11 3.78 7.73 -2.91 -0.02 3.76 16 46 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.06 3.29 6.28 -2.39 -0.01 3.27 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 49 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.06 2.40 7.96 -2.39 -0.02 2.39 16 51 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 52 H 0.08 2.30 8.10 -2.39 -0.02 2.28 16 Total: -1.00 -81.45 409.51 1.19 -80.26 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -1.71 Total: 15.10 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: 6.27 Total: -1.45 kcal Atomic # 7 Polarization: -118.30 SS G_CDS: -5.36 Total: -123.66 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: -0.04 Total: -17.87 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -81.45 1.19 -80.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161485839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.624 kcal (2) G-P(sol) polarization free energy of solvation -81.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds