Wall clock time and date at job start Wed Apr 1 2020 03:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34267 * 126.28854 * 2 1 4 4 H 0.96999 * 125.75298 * 359.97438 * 3 2 1 5 5 N 1.39932 * 108.49090 * 179.97438 * 3 2 1 6 6 C 1.30451 * 108.89796 * 0.02562 * 5 3 2 7 7 C 1.50692 * 125.98715 * 180.02562 * 6 5 3 8 8 C 1.53003 * 109.47370 * 299.96996 * 7 6 5 9 9 C 1.53001 * 109.47442 * 59.96810 * 7 6 5 10 10 C 1.38042 * 126.29516 * 179.68368 * 2 1 3 11 11 C 1.47428 * 126.41075 * 359.97438 * 10 2 1 12 12 O 1.21607 * 120.00174 * 90.02646 * 11 10 2 13 13 N 1.34775 * 120.00120 * 270.01491 * 11 10 2 14 14 C 1.46499 * 120.00293 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46964 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47028 * 179.97438 * 15 14 13 17 17 C 1.29457 * 117.69115 * 95.00124 * 16 15 14 18 18 C 1.50323 * 123.65331 * 180.85858 * 17 16 15 19 19 N 1.47003 * 109.16446 * 349.02606 * 18 17 16 20 20 C 1.36931 * 121.37653 * 222.96409 * 19 18 17 21 21 H 1.08000 * 120.00129 * 155.97189 * 20 19 18 22 22 C 1.38812 * 120.00155 * 335.98269 * 20 19 18 23 23 N 1.31620 * 119.99775 * 344.49206 * 22 20 19 24 24 Si 1.86802 * 120.00371 * 164.49132 * 22 20 19 25 25 H 1.48500 * 109.46969 * 94.45094 * 24 22 20 26 26 H 1.48497 * 109.47059 * 214.45269 * 24 22 20 27 27 H 1.48495 * 109.46931 * 334.45170 * 24 22 20 28 28 C 1.47342 * 117.25038 * 42.94452 * 19 18 17 29 29 C 1.49966 * 117.69980 * 274.74383 * 16 15 14 30 30 H 1.09000 * 109.47223 * 90.03196 * 1 2 3 31 31 H 1.09003 * 109.47671 * 330.02611 * 1 2 3 32 32 H 1.09006 * 109.46718 * 210.02549 * 1 2 3 33 33 H 1.09002 * 109.47424 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47034 * 300.00778 * 8 7 6 35 35 H 1.09002 * 109.46898 * 59.99615 * 8 7 6 36 36 H 1.08996 * 109.47780 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.46643 * 60.00187 * 9 7 6 38 38 H 1.09002 * 109.47111 * 179.97438 * 9 7 6 39 39 H 1.08999 * 109.47578 * 300.00143 * 9 7 6 40 40 H 0.97009 * 119.99816 * 0.02562 * 13 11 10 41 41 H 1.09003 * 109.47037 * 300.00276 * 14 13 11 42 42 H 1.08996 * 109.46903 * 60.00158 * 14 13 11 43 43 H 1.08995 * 109.47692 * 300.00369 * 15 14 13 44 44 H 1.09002 * 109.46774 * 60.00509 * 15 14 13 45 45 H 1.08001 * 118.17558 * 0.88347 * 17 16 15 46 46 H 1.09006 * 109.51893 * 108.92734 * 18 17 16 47 47 H 1.08997 * 109.52243 * 229.11627 * 18 17 16 48 48 H 0.97001 * 119.99902 * 180.02562 * 23 22 20 49 49 H 1.09010 * 109.77848 * 57.81315 * 28 19 18 50 50 H 1.09002 * 109.78116 * 178.61727 * 28 19 18 51 51 H 1.08993 * 109.31445 * 281.29210 * 29 16 15 52 52 H 1.09003 * 109.31187 * 40.71874 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3016 1.0823 0.0000 4 1 2.0026 2.0050 -0.0004 5 7 3.6340 0.6545 0.0006 6 6 3.6590 -0.6497 0.0004 7 6 4.8951 -1.5116 0.0014 8 6 5.7269 -1.2120 -1.2474 9 6 5.7253 -1.2114 1.2511 10 6 2.3241 -1.1126 0.0061 11 6 1.8858 -2.5202 0.0144 12 8 1.7052 -3.1070 -1.0352 13 7 1.6856 -3.1568 1.1854 14 6 1.2507 -4.5557 1.1937 15 6 1.0985 -5.0338 2.6391 16 6 0.6505 -6.4727 2.6476 17 6 1.5619 -7.3859 2.7534 18 6 1.2675 -8.8601 2.7572 19 7 -0.1825 -9.0623 2.8899 20 6 -0.6954 -10.0205 3.7229 21 1 -1.6986 -9.9190 4.1097 22 6 0.0742 -11.1223 4.0703 23 7 1.1574 -11.4122 3.3811 24 14 -0.4274 -12.1936 5.5160 25 1 -1.2327 -13.3410 5.0259 26 1 0.7883 -12.6994 6.2026 27 1 -1.2366 -11.3920 6.4688 28 6 -1.0612 -8.1912 2.0900 29 6 -0.8202 -6.7455 2.5389 30 1 -0.3634 -0.0006 -1.0277 31 1 -0.3634 0.8902 0.5134 32 1 -0.3633 -0.8898 0.5143 33 1 4.6054 -2.5624 0.0014 34 1 5.1355 -1.4258 -2.1377 35 1 6.0166 -0.1612 -1.2475 36 1 6.6207 -1.8358 -1.2469 37 1 5.1327 -1.4249 2.1407 38 1 6.6192 -1.8352 1.2520 39 1 6.0151 -0.1606 1.2511 40 1 1.8296 -2.6886 2.0228 41 1 0.2930 -4.6414 0.6802 42 1 1.9927 -5.1698 0.6836 43 1 2.0559 -4.9480 3.1530 44 1 0.3562 -4.4195 3.1487 45 1 2.5910 -7.0712 2.8445 46 1 1.6130 -9.3028 1.8229 47 1 1.7794 -9.3316 3.5960 48 1 1.6949 -12.1823 3.6236 49 1 -0.8219 -8.2976 1.0318 50 1 -2.1033 -8.4604 2.2620 51 1 -1.2898 -6.5822 3.5088 52 1 -1.2600 -6.0653 1.8095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161665595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:31 Heat of formation + Delta-G solvation = 50.409197 kcal Electronic energy + Delta-G solvation = -30093.919500 eV Core-core repulsion = 26094.977289 eV Total energy + Delta-G solvation = -3998.942211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.83786 -39.29452 -37.83289 -36.07479 -35.33640 -33.51681 -32.51839 -31.53497 -30.98202 -29.79739 -28.72498 -27.60056 -27.39139 -25.35336 -23.60795 -23.39490 -22.67080 -22.00574 -20.91966 -19.87600 -19.39051 -18.12671 -17.58409 -16.65474 -16.24974 -15.70828 -15.43264 -15.21665 -15.06631 -14.90815 -14.64451 -14.12026 -13.99991 -13.78500 -13.67477 -13.57810 -13.36872 -13.18642 -13.00810 -12.86526 -12.58082 -12.40811 -12.17677 -11.96337 -11.77689 -11.55208 -11.48579 -11.39751 -11.34577 -10.99282 -10.90814 -10.87624 -10.70231 -10.31599 -10.26157 -10.00697 -9.78638 -9.73932 -9.51579 -9.08422 -8.94524 -8.62988 -7.89070 -6.69610 -5.76281 -3.14730 1.34105 2.12623 2.32292 2.51268 2.89899 3.33223 3.39209 3.46071 3.48375 4.02171 4.27580 4.48663 4.51841 4.69232 4.80509 4.88245 4.99152 5.05534 5.14019 5.18816 5.26508 5.31818 5.39111 5.40825 5.42463 5.46688 5.58505 5.59464 5.63051 5.68080 5.73707 5.83233 5.95906 5.98767 6.04703 6.08629 6.14957 6.19234 6.24207 6.40539 6.42755 6.58696 6.78733 6.81804 6.93688 7.24763 7.26864 7.35527 7.42685 7.46950 7.77679 7.91660 8.17914 8.41914 9.23343 9.86360 10.45106 11.34122 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.001971 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.931354 B =14200.101861 C =15019.253762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.130 3.870 3 N -0.464 5.464 4 H 0.441 0.559 5 N -0.289 5.289 6 C 0.127 3.873 7 C -0.020 4.020 8 C -0.142 4.142 9 C -0.142 4.142 10 C -0.281 4.281 11 C 0.594 3.406 12 O -0.533 6.533 13 N -0.722 5.722 14 C 0.123 3.877 15 C -0.091 4.091 16 C -0.142 4.142 17 C -0.146 4.146 18 C 0.196 3.804 19 N -0.596 5.596 20 C -0.244 4.244 21 H 0.068 0.932 22 C -0.003 4.003 23 N -0.909 5.909 24 Si 0.904 3.096 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.143 3.857 29 C -0.091 4.091 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.057 0.943 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.399 0.601 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.091 0.909 46 H 0.038 0.962 47 H 0.090 0.910 48 H 0.253 0.747 49 H 0.024 0.976 50 H 0.055 0.945 51 H 0.062 0.938 52 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.924 27.222 -4.929 27.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.002 4.002 3 N -0.170 5.170 4 H 0.285 0.715 5 N -0.111 5.111 6 C -0.041 4.041 7 C -0.040 4.040 8 C -0.200 4.200 9 C -0.200 4.200 10 C -0.296 4.296 11 C 0.378 3.622 12 O -0.408 6.408 13 N -0.373 5.373 14 C 0.001 3.999 15 C -0.129 4.129 16 C -0.143 4.143 17 C -0.166 4.166 18 C 0.071 3.929 19 N -0.319 5.319 20 C -0.374 4.374 21 H 0.085 0.915 22 C -0.200 4.200 23 N -0.555 5.555 24 Si 0.734 3.266 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.205 1.205 28 C 0.016 3.984 29 C -0.130 4.130 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.233 0.767 41 H 0.088 0.912 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.109 0.891 46 H 0.056 0.944 47 H 0.108 0.892 48 H 0.063 0.937 49 H 0.042 0.958 50 H 0.074 0.926 51 H 0.080 0.920 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 4.597 27.673 -5.651 28.616 hybrid contribution -0.754 -0.477 1.146 1.453 sum 3.843 27.195 -4.505 27.833 Atomic orbital electron populations 1.20584 0.86409 1.04474 1.04331 1.21376 0.94453 0.86730 0.97645 1.46005 1.04134 1.08228 1.58648 0.71457 1.77054 0.95508 1.12497 1.26003 1.22270 0.94016 0.91102 0.96672 1.19703 0.89886 0.97369 0.97067 1.21802 0.99487 1.02206 0.96501 1.21816 0.99560 1.02338 0.96242 1.19916 0.93012 0.93473 1.23213 1.17288 0.76540 0.84656 0.83675 1.90811 1.50652 1.67586 1.31788 1.46146 1.69073 1.13786 1.08284 1.21468 1.00620 0.80132 0.97721 1.20904 1.01316 0.95863 0.94801 1.20224 0.95826 0.92425 1.05861 1.23120 0.97363 0.98574 0.97519 1.19703 0.85090 0.87053 1.01007 1.44137 1.00737 1.38502 1.48538 1.19174 1.00016 0.98295 1.19879 0.91451 1.24989 0.98606 0.96775 0.99663 1.70021 1.17856 1.28360 1.39220 0.86255 0.77428 0.80399 0.82568 1.21529 1.21600 1.20535 1.20993 0.94815 0.88846 0.93725 1.20785 0.92575 0.99178 1.00425 0.89247 0.90329 0.89189 0.89345 0.92342 0.92019 0.91712 0.92471 0.91680 0.91970 0.76686 0.91217 0.91178 0.91525 0.91535 0.89055 0.94426 0.89183 0.93663 0.95783 0.92610 0.91969 0.92931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.55 10.25 36.00 0.37 -0.18 16 2 C 0.13 1.10 7.29 -81.60 -0.60 0.50 16 3 N -0.46 -3.54 7.29 33.86 0.25 -3.29 16 4 H 0.44 1.80 8.96 -182.73 -1.64 0.17 16 5 N -0.29 -2.98 12.63 33.89 0.43 -2.55 16 6 C 0.13 1.37 5.77 -82.02 -0.47 0.90 16 7 C -0.02 -0.19 3.31 -91.77 -0.30 -0.49 16 8 C -0.14 -1.25 9.18 37.16 0.34 -0.91 16 9 C -0.14 -1.12 9.18 37.16 0.34 -0.78 16 10 C -0.28 -3.10 5.88 -105.07 -0.62 -3.72 16 11 C 0.59 7.63 6.67 -12.52 -0.08 7.54 16 12 O -0.53 -9.06 17.11 5.27 0.09 -8.97 16 13 N -0.72 -7.80 5.55 -61.38 -0.34 -8.14 16 14 C 0.12 1.56 5.66 -4.04 -0.02 1.54 16 15 C -0.09 -1.15 5.32 -27.88 -0.15 -1.30 16 16 C -0.14 -2.42 5.11 -100.99 -0.52 -2.93 16 17 C -0.15 -2.81 9.47 -35.78 -0.34 -3.15 16 18 C 0.20 4.73 5.23 -5.10 -0.03 4.71 16 19 N -0.60 -15.10 3.01 -173.56 -0.52 -15.62 16 20 C -0.24 -6.74 9.71 -15.06 -0.15 -6.88 16 21 H 0.07 1.82 7.88 -52.49 -0.41 1.40 16 22 C 0.00 -0.07 5.01 -17.43 -0.09 -0.16 16 23 N -0.91 -26.43 11.08 55.49 0.61 -25.81 16 24 Si 0.90 21.76 29.58 -169.99 -5.03 16.73 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.14 3.01 6.59 -3.43 -0.02 2.99 16 29 C -0.09 -1.58 5.95 -28.09 -0.17 -1.75 16 30 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.09 0.55 7.95 -51.93 -0.41 0.14 16 33 H 0.09 0.92 7.57 -51.93 -0.39 0.53 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.40 3.38 8.46 -40.82 -0.35 3.03 16 41 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 0.79 7.78 -51.93 -0.40 0.39 16 44 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 45 H 0.09 1.55 7.73 -52.49 -0.41 1.15 16 46 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.09 2.40 6.41 -51.93 -0.33 2.07 16 48 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 49 H 0.02 0.51 8.14 -51.92 -0.42 0.09 16 50 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 51 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 52 H 0.05 0.79 8.10 -51.93 -0.42 0.37 16 LS Contribution 424.17 15.07 6.39 6.39 Total: -1.00 -34.06 424.17 -10.85 -44.90 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -10.23 Total: 0.43 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -2.50 Total: -4.07 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: 0.43 Total: -55.42 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -34.06 -10.85 -44.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161665595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.313 kcal (2) G-P(sol) polarization free energy of solvation -34.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds