Wall clock time and date at job start Wed Apr 1 2020 03:47:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.34267 * 126.28854 * 2 1 4 4 H 0.96999 * 125.75298 * 359.97438 * 3 2 1 5 5 N 1.39932 * 108.49090 * 179.97438 * 3 2 1 6 6 C 1.30451 * 108.89796 * 0.02562 * 5 3 2 7 7 C 1.50692 * 125.98715 * 180.02562 * 6 5 3 8 8 C 1.53003 * 109.47370 * 299.96996 * 7 6 5 9 9 C 1.53001 * 109.47442 * 59.96810 * 7 6 5 10 10 C 1.38042 * 126.29516 * 179.68368 * 2 1 3 11 11 C 1.47428 * 126.41075 * 359.97438 * 10 2 1 12 12 O 1.21607 * 120.00174 * 90.02646 * 11 10 2 13 13 N 1.34775 * 120.00120 * 270.01491 * 11 10 2 14 14 C 1.46499 * 120.00293 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.46964 * 180.02562 * 14 13 11 16 16 C 1.50701 * 109.47028 * 179.97438 * 15 14 13 17 17 C 1.29457 * 117.69115 * 95.00124 * 16 15 14 18 18 C 1.50323 * 123.65331 * 180.85858 * 17 16 15 19 19 N 1.47003 * 109.16446 * 349.02606 * 18 17 16 20 20 C 1.36931 * 121.37653 * 222.96409 * 19 18 17 21 21 H 1.08000 * 120.00129 * 155.97189 * 20 19 18 22 22 C 1.38812 * 120.00155 * 335.98269 * 20 19 18 23 23 N 1.31620 * 119.99775 * 344.49206 * 22 20 19 24 24 Si 1.86802 * 120.00371 * 164.49132 * 22 20 19 25 25 H 1.48500 * 109.46969 * 94.45094 * 24 22 20 26 26 H 1.48497 * 109.47059 * 214.45269 * 24 22 20 27 27 H 1.48495 * 109.46931 * 334.45170 * 24 22 20 28 28 C 1.47342 * 117.25038 * 42.94452 * 19 18 17 29 29 C 1.49966 * 117.69980 * 274.74383 * 16 15 14 30 30 H 1.09000 * 109.47223 * 90.03196 * 1 2 3 31 31 H 1.09003 * 109.47671 * 330.02611 * 1 2 3 32 32 H 1.09006 * 109.46718 * 210.02549 * 1 2 3 33 33 H 1.09002 * 109.47424 * 179.97438 * 7 6 5 34 34 H 1.09001 * 109.47034 * 300.00778 * 8 7 6 35 35 H 1.09002 * 109.46898 * 59.99615 * 8 7 6 36 36 H 1.08996 * 109.47780 * 180.02562 * 8 7 6 37 37 H 1.09004 * 109.46643 * 60.00187 * 9 7 6 38 38 H 1.09002 * 109.47111 * 179.97438 * 9 7 6 39 39 H 1.08999 * 109.47578 * 300.00143 * 9 7 6 40 40 H 0.97009 * 119.99816 * 0.02562 * 13 11 10 41 41 H 1.09003 * 109.47037 * 300.00276 * 14 13 11 42 42 H 1.08996 * 109.46903 * 60.00158 * 14 13 11 43 43 H 1.08995 * 109.47692 * 300.00369 * 15 14 13 44 44 H 1.09002 * 109.46774 * 60.00509 * 15 14 13 45 45 H 1.08001 * 118.17558 * 0.88347 * 17 16 15 46 46 H 1.09006 * 109.51893 * 108.92734 * 18 17 16 47 47 H 1.08997 * 109.52243 * 229.11627 * 18 17 16 48 48 H 0.97001 * 119.99902 * 180.02562 * 23 22 20 49 49 H 1.09010 * 109.77848 * 57.81315 * 28 19 18 50 50 H 1.09002 * 109.78116 * 178.61727 * 28 19 18 51 51 H 1.08993 * 109.31445 * 281.29210 * 29 16 15 52 52 H 1.09003 * 109.31187 * 40.71874 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3016 1.0823 0.0000 4 1 2.0026 2.0050 -0.0004 5 7 3.6340 0.6545 0.0006 6 6 3.6590 -0.6497 0.0004 7 6 4.8951 -1.5116 0.0014 8 6 5.7269 -1.2120 -1.2474 9 6 5.7253 -1.2114 1.2511 10 6 2.3241 -1.1126 0.0061 11 6 1.8858 -2.5202 0.0144 12 8 1.7052 -3.1070 -1.0352 13 7 1.6856 -3.1568 1.1854 14 6 1.2507 -4.5557 1.1937 15 6 1.0985 -5.0338 2.6391 16 6 0.6505 -6.4727 2.6476 17 6 1.5619 -7.3859 2.7534 18 6 1.2675 -8.8601 2.7572 19 7 -0.1825 -9.0623 2.8899 20 6 -0.6954 -10.0205 3.7229 21 1 -1.6986 -9.9190 4.1097 22 6 0.0742 -11.1223 4.0703 23 7 1.1574 -11.4122 3.3811 24 14 -0.4274 -12.1936 5.5160 25 1 -1.2327 -13.3410 5.0259 26 1 0.7883 -12.6994 6.2026 27 1 -1.2366 -11.3920 6.4688 28 6 -1.0612 -8.1912 2.0900 29 6 -0.8202 -6.7455 2.5389 30 1 -0.3634 -0.0006 -1.0277 31 1 -0.3634 0.8902 0.5134 32 1 -0.3633 -0.8898 0.5143 33 1 4.6054 -2.5624 0.0014 34 1 5.1355 -1.4258 -2.1377 35 1 6.0166 -0.1612 -1.2475 36 1 6.6207 -1.8358 -1.2469 37 1 5.1327 -1.4249 2.1407 38 1 6.6192 -1.8352 1.2520 39 1 6.0151 -0.1606 1.2511 40 1 1.8296 -2.6886 2.0228 41 1 0.2930 -4.6414 0.6802 42 1 1.9927 -5.1698 0.6836 43 1 2.0559 -4.9480 3.1530 44 1 0.3562 -4.4195 3.1487 45 1 2.5910 -7.0712 2.8445 46 1 1.6130 -9.3028 1.8229 47 1 1.7794 -9.3316 3.5960 48 1 1.6949 -12.1823 3.6236 49 1 -0.8219 -8.2976 1.0318 50 1 -2.1033 -8.4604 2.2620 51 1 -1.2898 -6.5822 3.5088 52 1 -1.2600 -6.0653 1.8095 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161665595.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:47:29 Heat of formation + Delta-G solvation = 28.516113 kcal Electronic energy + Delta-G solvation = -30094.868855 eV Core-core repulsion = 26094.977289 eV Total energy + Delta-G solvation = -3999.891566 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.55537 -40.32955 -39.37932 -36.76201 -36.67363 -35.05880 -33.30014 -32.99276 -31.94220 -31.42325 -30.08247 -28.33835 -28.04880 -27.02255 -24.83397 -24.29981 -24.15526 -23.12594 -22.41844 -20.79190 -20.09345 -19.43828 -18.86317 -17.73105 -17.34061 -17.06580 -16.88965 -16.32414 -16.02556 -15.76370 -15.69730 -15.43942 -15.29612 -15.19615 -14.89714 -14.69725 -14.28266 -14.24328 -14.00730 -13.78193 -13.55390 -13.35631 -13.34220 -13.17050 -13.02714 -12.81444 -12.77486 -12.56137 -12.47233 -12.33832 -12.16532 -12.16119 -12.04222 -11.87114 -11.66961 -11.64146 -11.24695 -10.97853 -10.66783 -10.41832 -10.09916 -9.68965 -9.45151 -8.73159 -7.86571 -5.28480 0.67607 1.33468 1.46826 1.47843 1.48757 1.53674 1.58745 1.74512 2.37900 2.52274 3.30214 3.37524 3.60805 3.69589 3.88880 3.98579 4.01627 4.14308 4.16045 4.19240 4.21431 4.32281 4.39667 4.47571 4.58935 4.61236 4.62820 4.72279 4.78356 4.86660 4.89968 4.92600 4.94602 4.95619 5.00089 5.01373 5.08207 5.13849 5.20980 5.26141 5.26927 5.31847 5.42933 5.44212 5.45599 5.53123 5.62509 5.91544 6.26708 6.31648 6.35433 6.55346 6.57123 7.14790 7.24741 7.85212 8.40062 9.22104 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018954 B = 0.001971 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.931354 B =14200.101861 C =15019.253762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.147 3.853 3 N -0.450 5.450 4 H 0.457 0.543 5 N -0.307 5.307 6 C 0.119 3.881 7 C -0.023 4.023 8 C -0.138 4.138 9 C -0.135 4.135 10 C -0.314 4.314 11 C 0.601 3.399 12 O -0.582 6.582 13 N -0.704 5.704 14 C 0.132 3.868 15 C -0.078 4.078 16 C -0.119 4.119 17 C -0.175 4.175 18 C 0.207 3.793 19 N -0.616 5.616 20 C -0.256 4.256 21 H 0.071 0.929 22 C -0.058 4.058 23 N -0.942 5.942 24 Si 0.971 3.029 25 H -0.286 1.286 26 H -0.293 1.293 27 H -0.268 1.268 28 C 0.135 3.865 29 C -0.086 4.086 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.086 0.914 33 H 0.074 0.926 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.414 0.586 41 H 0.064 0.936 42 H 0.049 0.951 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.112 0.888 46 H 0.001 0.999 47 H 0.054 0.946 48 H 0.249 0.751 49 H 0.017 0.983 50 H 0.059 0.941 51 H 0.069 0.931 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.788 30.345 -3.653 30.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.013 3.987 3 N -0.158 5.158 4 H 0.305 0.695 5 N -0.129 5.129 6 C -0.048 4.048 7 C -0.044 4.044 8 C -0.196 4.196 9 C -0.193 4.193 10 C -0.329 4.329 11 C 0.387 3.613 12 O -0.461 6.461 13 N -0.356 5.356 14 C 0.008 3.992 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.194 4.194 18 C 0.082 3.918 19 N -0.340 5.340 20 C -0.386 4.386 21 H 0.089 0.911 22 C -0.253 4.253 23 N -0.589 5.589 24 Si 0.799 3.201 25 H -0.213 1.213 26 H -0.219 1.219 27 H -0.193 1.193 28 C 0.009 3.991 29 C -0.125 4.125 30 H 0.112 0.888 31 H 0.129 0.871 32 H 0.105 0.895 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.251 0.749 41 H 0.082 0.918 42 H 0.068 0.932 43 H 0.100 0.900 44 H 0.113 0.887 45 H 0.130 0.870 46 H 0.019 0.981 47 H 0.073 0.927 48 H 0.058 0.942 49 H 0.036 0.964 50 H 0.077 0.923 51 H 0.088 0.912 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 3.449 30.865 -4.346 31.359 hybrid contribution -0.498 -1.373 0.673 1.608 sum 2.950 29.492 -3.673 29.866 Atomic orbital electron populations 1.20726 0.84110 1.05922 1.05005 1.21749 0.95653 0.86015 0.95318 1.46022 1.03287 1.09042 1.57431 0.69507 1.76999 0.96948 1.12227 1.26712 1.22414 0.94266 0.91411 0.96749 1.19739 0.90094 0.96483 0.98072 1.21769 0.99669 1.02562 0.95589 1.21764 0.99675 1.02472 0.95357 1.19879 0.93771 0.93067 1.26180 1.17506 0.75439 0.85209 0.83188 1.90786 1.52954 1.68827 1.33540 1.45935 1.68060 1.12956 1.08626 1.21225 0.99753 0.80815 0.97367 1.20798 1.02909 0.92815 0.95016 1.20574 0.95210 0.94519 1.01655 1.22817 0.99262 0.95802 1.01569 1.19343 0.84416 0.90239 0.97832 1.44438 1.01664 1.38832 1.49048 1.19538 1.00218 0.98764 1.20084 0.91081 1.25804 0.98889 0.98369 1.02215 1.70202 1.19056 1.28846 1.40779 0.85206 0.76889 0.78582 0.79461 1.21335 1.21910 1.19292 1.21202 0.94307 0.90606 0.92962 1.20744 0.93189 0.96922 1.01631 0.88830 0.87082 0.89537 0.90725 0.93884 0.91853 0.90342 0.92390 0.90597 0.92033 0.74898 0.91811 0.93227 0.89980 0.88741 0.86970 0.98112 0.92739 0.94180 0.96444 0.92265 0.91239 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.25 71.24 0.73 -0.05 16 2 C 0.15 2.13 7.29 42.14 0.31 2.44 16 3 N -0.45 -5.80 7.29 -46.79 -0.34 -6.14 16 4 H 0.46 2.43 8.96 -213.43 -1.91 0.52 16 5 N -0.31 -5.86 12.63 -46.68 -0.59 -6.45 16 6 C 0.12 2.45 5.77 43.51 0.25 2.70 16 7 C -0.02 -0.44 3.31 -11.54 -0.04 -0.47 16 8 C -0.14 -2.39 9.18 71.98 0.66 -1.73 16 9 C -0.13 -1.98 9.18 71.98 0.66 -1.32 16 10 C -0.31 -6.53 5.88 -20.15 -0.12 -6.65 16 11 C 0.60 14.88 6.67 86.66 0.58 15.46 16 12 O -0.58 -19.89 17.11 -4.05 -0.07 -19.96 16 13 N -0.70 -13.77 5.55 -466.37 -2.59 -16.36 16 14 C 0.13 3.07 5.66 86.38 0.49 3.56 16 15 C -0.08 -1.69 5.32 29.85 0.16 -1.53 16 16 C -0.12 -3.78 5.11 -15.14 -0.08 -3.86 16 17 C -0.18 -6.72 9.47 27.10 0.26 -6.46 16 18 C 0.21 10.43 5.23 85.42 0.45 10.88 16 19 N -0.62 -31.89 3.01 -703.02 -2.11 -34.00 16 20 C -0.26 -14.36 9.71 84.03 0.82 -13.54 16 21 H 0.07 3.83 7.88 -2.91 -0.02 3.81 16 22 C -0.06 -3.32 5.01 84.86 0.43 -2.90 16 23 N -0.94 -57.01 11.08 21.65 0.24 -56.77 16 24 Si 0.97 45.48 29.58 68.60 2.03 47.51 16 25 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 26 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 27 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 28 C 0.13 5.63 6.59 86.31 0.57 6.20 16 29 C -0.09 -2.79 5.95 29.71 0.18 -2.62 16 30 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.09 0.80 7.95 -2.38 -0.02 0.78 16 33 H 0.07 1.57 7.57 -2.39 -0.02 1.55 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 38 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.41 5.75 8.46 -92.70 -0.78 4.96 16 41 H 0.06 1.59 8.11 -2.39 -0.02 1.58 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.62 7.78 -2.39 -0.02 1.61 16 44 H 0.09 1.64 8.11 -2.39 -0.02 1.62 16 45 H 0.11 3.76 7.73 -2.91 -0.02 3.74 16 46 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 47 H 0.05 3.08 6.41 -2.39 -0.02 3.06 16 48 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 49 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 50 H 0.06 2.38 7.96 -2.39 -0.02 2.36 16 51 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 52 H 0.09 2.28 8.10 -2.39 -0.02 2.26 16 Total: -1.00 -77.51 424.17 1.08 -76.43 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -1.77 Total: 15.64 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: 6.29 Total: 0.11 kcal Atomic # 7 Polarization: -114.34 SS G_CDS: -5.39 Total: -119.73 kcal Atomic # 8 Polarization: -19.89 SS G_CDS: -0.07 Total: -19.96 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -77.51 1.08 -76.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161665595.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.944 kcal (2) G-P(sol) polarization free energy of solvation -77.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds