Wall clock time and date at job start Wed Apr 1 2020 04:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34855 * 125.96236 * 2 1 4 4 N 1.36309 * 106.68977 * 180.02562 * 3 2 1 5 5 C 1.35425 * 107.39524 * 359.96854 * 4 3 2 6 6 N 1.30085 * 108.63437 * 0.04736 * 5 4 3 7 7 C 1.51043 * 123.97845 * 180.09517 * 5 4 3 8 8 C 1.53405 * 108.20535 * 15.98235 * 7 5 4 9 9 H 1.08992 * 109.54651 * 71.11057 * 8 7 5 10 10 C 1.50707 * 109.50745 * 191.22511 * 8 7 5 11 11 O 1.21280 * 119.99475 * 119.76254 * 10 8 7 12 12 N 1.34769 * 120.00076 * 299.76057 * 10 8 7 13 13 C 1.46502 * 119.99693 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46857 * 180.02562 * 13 12 10 15 15 C 1.53005 * 109.46923 * 175.02630 * 14 13 12 16 16 C 1.53003 * 115.54689 * 278.02707 * 15 14 13 17 17 N 1.46495 * 109.47043 * 303.90343 * 16 15 14 18 18 C 1.36945 * 119.99651 * 175.59261 * 17 16 15 19 19 H 1.08001 * 120.00063 * 359.97438 * 18 17 16 20 20 C 1.38814 * 119.99623 * 179.97438 * 18 17 16 21 21 N 1.31610 * 120.00263 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99645 * 179.97438 * 20 18 17 23 23 H 1.48491 * 109.46869 * 90.00184 * 22 20 18 24 24 H 1.48504 * 109.46751 * 210.00399 * 22 20 18 25 25 H 1.48501 * 109.46940 * 330.00188 * 22 20 18 26 26 C 1.52995 * 117.49803 * 132.32485 * 15 14 13 27 27 C 1.52997 * 117.50179 * 63.69838 * 15 14 13 28 28 C 1.53147 * 109.23668 * 311.15159 * 8 7 5 29 29 C 1.46473 * 127.77633 * 179.97438 * 4 3 2 30 30 H 1.08998 * 109.46840 * 269.97098 * 1 2 3 31 31 H 1.08988 * 109.47444 * 29.97334 * 1 2 3 32 32 H 1.09002 * 109.46922 * 149.97357 * 1 2 3 33 33 H 1.07998 * 126.65417 * 359.97438 * 3 2 1 34 34 H 1.09005 * 109.71815 * 256.30784 * 7 5 4 35 35 H 1.08999 * 109.71788 * 135.66272 * 7 5 4 36 36 H 0.96994 * 120.00435 * 0.02562 * 12 10 8 37 37 H 1.09000 * 109.47369 * 60.00253 * 13 12 10 38 38 H 1.08998 * 109.47103 * 299.99983 * 13 12 10 39 39 H 1.09005 * 109.46888 * 295.01699 * 14 13 12 40 40 H 1.08992 * 109.47446 * 55.02289 * 14 13 12 41 41 H 1.08999 * 109.46936 * 63.90149 * 16 15 14 42 42 H 1.09001 * 109.47099 * 183.89677 * 16 15 14 43 43 H 0.96996 * 120.00473 * 355.58643 * 17 16 15 44 44 H 0.97004 * 120.00351 * 179.97438 * 21 20 18 45 45 H 1.08998 * 117.50058 * 359.97438 * 26 15 14 46 46 H 1.09003 * 117.50109 * 145.02382 * 26 15 14 47 47 H 1.08992 * 117.50066 * 214.97743 * 27 15 14 48 48 H 1.08998 * 117.49622 * 359.97438 * 27 15 14 49 49 H 1.09003 * 109.46648 * 189.48313 * 28 8 7 50 50 H 1.08996 * 109.47181 * 309.48030 * 28 8 7 51 51 H 1.09005 * 109.57592 * 77.33583 * 29 4 3 52 52 H 1.08991 * 109.69980 * 316.99394 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6416 -0.0006 5 6 3.5413 -0.7119 -0.0002 6 7 2.2957 -1.0870 -0.0005 7 6 4.7655 -1.5966 0.0014 8 6 5.9741 -0.7418 0.4038 9 1 5.9061 -0.4892 1.4618 10 6 7.2433 -1.5143 0.1513 11 8 8.0739 -1.0808 -0.6188 12 7 7.4552 -2.6866 0.7814 13 6 8.6893 -3.4372 0.5364 14 6 8.6790 -4.7211 1.3686 15 6 9.9074 -5.5643 1.0205 16 6 9.7818 -6.4248 -0.2383 17 7 8.6125 -7.2989 -0.1177 18 6 8.2448 -8.0992 -1.1663 19 1 8.8167 -8.0857 -2.0824 20 6 7.1371 -8.9279 -1.0518 21 7 6.4399 -8.9441 0.0643 22 14 6.6352 -10.0192 -2.4825 23 1 7.3192 -11.3321 -2.3673 24 1 5.1644 -10.2232 -2.4572 25 1 7.0228 -9.3694 -3.7603 26 6 10.7308 -6.1257 2.1813 27 6 11.2827 -4.9741 1.3386 28 6 5.9831 0.5431 -0.4295 29 6 4.8148 1.4383 -0.0013 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3633 -0.8898 -0.5143 33 1 1.9763 2.1222 -0.0004 34 1 4.9224 -2.0092 -0.9952 35 1 4.6329 -2.4066 0.7186 36 1 6.7908 -3.0334 1.3971 37 1 9.5475 -2.8275 0.8189 38 1 8.7562 -3.6909 -0.5215 39 1 8.7011 -4.4672 2.4284 40 1 7.7747 -5.2887 1.1497 41 1 9.6650 -5.7797 -1.1092 42 1 10.6794 -7.0323 -0.3541 43 1 8.0987 -7.3109 0.7049 44 1 5.6656 -9.5229 0.1443 45 1 10.3978 -5.8940 3.1930 46 1 11.1834 -7.1084 2.0484 47 1 12.0981 -5.1991 0.6513 48 1 11.3123 -3.9849 1.7954 49 1 6.9228 1.0722 -0.2711 50 1 5.8809 0.2923 -1.4853 51 1 4.9993 1.8261 1.0006 52 1 4.7146 2.2677 -0.7013 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165741825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:27 Heat of formation + Delta-G solvation = 22.322711 kcal Electronic energy + Delta-G solvation = -30089.238324 eV Core-core repulsion = 26089.078192 eV Total energy + Delta-G solvation = -4000.160133 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.34314 -41.03888 -39.57859 -37.40654 -36.10261 -35.75243 -34.40594 -32.79044 -32.47059 -31.23952 -29.80895 -28.22212 -27.75745 -25.38149 -24.74433 -24.60529 -23.60653 -22.83871 -21.69330 -21.13852 -20.15944 -19.86714 -19.03272 -18.05347 -17.86778 -17.15130 -16.86896 -16.65960 -16.60007 -16.17085 -15.75767 -15.31976 -15.20767 -15.17362 -14.96761 -14.83939 -14.60597 -14.58647 -14.13886 -13.91996 -13.81129 -13.49593 -13.16538 -13.13049 -13.01229 -12.83248 -12.79945 -12.63489 -12.52563 -12.31293 -12.24492 -12.15306 -12.11394 -11.93113 -11.82895 -11.10648 -10.99232 -10.91436 -10.85778 -10.52105 -10.48234 -10.09892 -9.13913 -8.96615 -7.94709 -5.21801 1.06614 1.45988 1.47090 1.51571 1.55381 1.84804 2.06815 2.11452 2.54298 2.90761 3.14174 3.38748 3.47408 3.48221 3.57168 3.83549 3.85401 3.96379 4.00107 4.05282 4.10337 4.12104 4.24054 4.27922 4.33885 4.42169 4.45496 4.49885 4.50721 4.61537 4.67661 4.73071 4.84153 4.85112 4.90340 4.95642 4.99445 5.02441 5.06109 5.08870 5.16461 5.20563 5.28567 5.34880 5.36857 5.40097 5.44203 5.49478 5.87959 6.23374 6.27843 6.49312 7.16257 7.17058 7.35322 8.11584 8.37166 9.28338 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008672 B = 0.002603 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3227.936381 B =10755.766531 C =13232.158694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.041 4.041 3 C -0.042 4.042 4 N -0.453 5.453 5 C 0.194 3.806 6 N -0.530 5.530 7 C -0.022 4.022 8 C -0.097 4.097 9 H 0.131 0.869 10 C 0.520 3.480 11 O -0.575 6.575 12 N -0.717 5.717 13 C 0.135 3.865 14 C -0.080 4.080 15 C -0.140 4.140 16 C 0.187 3.813 17 N -0.735 5.735 18 C -0.245 4.245 19 H 0.069 0.931 20 C -0.070 4.070 21 N -0.963 5.963 22 Si 0.967 3.033 23 H -0.286 1.286 24 H -0.294 1.294 25 H -0.274 1.274 26 C -0.165 4.165 27 C -0.150 4.150 28 C -0.113 4.113 29 C 0.105 3.895 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.053 0.947 33 H 0.211 0.789 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.413 0.587 37 H 0.076 0.924 38 H 0.040 0.960 39 H 0.090 0.910 40 H 0.058 0.942 41 H 0.015 0.985 42 H 0.013 0.987 43 H 0.377 0.623 44 H 0.251 0.749 45 H 0.108 0.892 46 H 0.081 0.919 47 H 0.096 0.904 48 H 0.115 0.885 49 H 0.110 0.890 50 H 0.063 0.937 51 H 0.113 0.887 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 26.857 6.610 27.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.170 4.170 3 C -0.175 4.175 4 N -0.136 5.136 5 C -0.068 4.068 6 N -0.250 5.250 7 C -0.062 4.062 8 C -0.119 4.119 9 H 0.149 0.851 10 C 0.307 3.693 11 O -0.455 6.455 12 N -0.368 5.368 13 C 0.011 3.989 14 C -0.117 4.117 15 C -0.141 4.141 16 C 0.061 3.939 17 N -0.378 5.378 18 C -0.377 4.377 19 H 0.087 0.913 20 C -0.262 4.262 21 N -0.614 5.614 22 Si 0.796 3.204 23 H -0.213 1.213 24 H -0.221 1.221 25 H -0.199 1.199 26 C -0.202 4.202 27 C -0.187 4.187 28 C -0.151 4.151 29 C -0.015 4.015 30 H 0.091 0.909 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.228 0.772 34 H 0.096 0.904 35 H 0.122 0.878 36 H 0.249 0.751 37 H 0.094 0.906 38 H 0.059 0.941 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.033 0.967 42 H 0.031 0.969 43 H 0.210 0.790 44 H 0.060 0.940 45 H 0.127 0.873 46 H 0.100 0.900 47 H 0.114 0.886 48 H 0.133 0.867 49 H 0.129 0.871 50 H 0.082 0.918 51 H 0.131 0.869 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -1.724 26.398 5.880 27.100 hybrid contribution -0.645 -0.765 -0.506 1.121 sum -2.368 25.632 5.374 26.297 Atomic orbital electron populations 1.20047 0.86345 1.02990 1.02596 1.21391 0.97845 0.88538 1.09194 1.22845 0.82299 1.01384 1.10978 1.45599 1.07706 1.06822 1.53490 1.23114 0.94345 0.82784 1.06596 1.69910 1.01118 1.32493 1.21507 1.20075 0.86436 0.95742 1.03904 1.21380 0.90501 0.95661 1.04315 0.85088 1.20700 0.88069 0.81115 0.79400 1.90697 1.47988 1.69588 1.37240 1.46025 1.22431 1.21737 1.46636 1.21168 0.86627 0.91946 0.99163 1.21120 0.96947 0.93638 1.00026 1.21407 0.93408 1.01983 0.97337 1.20230 0.89019 0.90355 0.94297 1.42438 1.31643 1.47874 1.15837 1.19573 1.08129 1.15425 0.94608 0.91311 1.25452 0.98730 1.02292 0.99772 1.69784 1.20928 1.43510 1.27186 0.85240 0.76747 0.79020 0.79376 1.21336 1.22097 1.19878 1.23056 1.03125 0.98198 0.95822 1.23048 0.94659 0.98433 1.02578 1.21703 0.99338 0.94253 0.99771 1.22292 0.79757 0.93927 1.05555 0.90943 0.89037 0.92758 0.77212 0.90436 0.87769 0.75114 0.90570 0.94140 0.89172 0.92350 0.96661 0.96920 0.78997 0.94016 0.87345 0.90034 0.88594 0.86657 0.87145 0.91806 0.86890 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.42 71.24 0.74 -0.30 16 2 C -0.04 -0.94 7.10 41.41 0.29 -0.65 16 3 C -0.04 -0.70 11.55 83.22 0.96 0.27 16 4 N -0.45 -7.87 3.13 -513.78 -1.61 -9.48 16 5 C 0.19 4.66 7.65 138.24 1.06 5.72 16 6 N -0.53 -15.50 11.24 -175.68 -1.98 -17.47 16 7 C -0.02 -0.47 5.47 30.09 0.16 -0.31 16 8 C -0.10 -1.59 2.55 -11.35 -0.03 -1.62 16 9 H 0.13 1.48 8.12 -2.39 -0.02 1.46 16 10 C 0.52 12.12 7.13 87.66 0.63 12.75 16 11 O -0.58 -17.70 15.83 -3.03 -0.05 -17.75 16 12 N -0.72 -16.17 5.46 -463.05 -2.53 -18.70 16 13 C 0.13 3.57 5.49 86.38 0.47 4.05 16 14 C -0.08 -2.19 5.20 30.60 0.16 -2.03 16 15 C -0.14 -4.27 1.65 -52.18 -0.09 -4.36 16 16 C 0.19 7.64 6.15 86.38 0.53 8.17 16 17 N -0.73 -37.40 5.23 -343.45 -1.80 -39.20 16 18 C -0.25 -13.96 9.99 84.03 0.84 -13.12 16 19 H 0.07 3.83 7.83 -2.91 -0.02 3.80 16 20 C -0.07 -4.06 5.50 84.86 0.47 -3.59 16 21 N -0.96 -58.94 13.06 21.65 0.28 -58.66 16 22 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 23 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.29 -14.41 7.11 99.48 0.71 -13.71 16 25 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 26 C -0.16 -4.37 9.87 30.59 0.30 -4.07 16 27 C -0.15 -3.49 9.58 30.59 0.29 -3.19 16 28 C -0.11 -1.58 4.67 30.74 0.14 -1.43 16 29 C 0.11 1.00 6.98 86.48 0.60 1.60 16 30 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.21 1.69 8.06 -2.91 -0.02 1.67 16 34 H 0.08 1.92 8.11 -2.38 -0.02 1.90 16 35 H 0.10 2.11 7.95 -2.39 -0.02 2.09 16 36 H 0.41 7.59 8.20 -92.71 -0.76 6.83 16 37 H 0.08 1.85 7.72 -2.39 -0.02 1.83 16 38 H 0.04 1.34 7.96 -2.39 -0.02 1.33 16 39 H 0.09 1.97 7.93 -2.38 -0.02 1.95 16 40 H 0.06 2.01 6.94 -2.39 -0.02 1.99 16 41 H 0.02 0.66 7.96 -2.39 -0.02 0.64 16 42 H 0.01 0.54 8.10 -2.39 -0.02 0.52 16 43 H 0.38 20.10 6.80 -92.71 -0.63 19.46 16 44 H 0.25 14.93 8.31 -92.71 -0.77 14.16 16 45 H 0.11 2.45 8.07 -2.39 -0.02 2.43 16 46 H 0.08 2.38 8.14 -2.39 -0.02 2.37 16 47 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.12 2.14 7.90 -2.39 -0.02 2.13 16 49 H 0.11 1.39 7.79 -2.39 -0.02 1.37 16 50 H 0.06 1.16 8.12 -2.39 -0.02 1.15 16 51 H 0.11 0.56 8.14 -2.38 -0.02 0.54 16 52 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 Total: -1.00 -78.94 420.62 1.43 -77.51 By element: Atomic # 1 Polarization: 37.20 SS G_CDS: -0.47 Total: 36.73 kcal Atomic # 6 Polarization: -9.68 SS G_CDS: 7.54 Total: -2.13 kcal Atomic # 7 Polarization: -135.89 SS G_CDS: -7.63 Total: -143.51 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.05 Total: -17.75 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -78.94 1.43 -77.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165741825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.833 kcal (2) G-P(sol) polarization free energy of solvation -78.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds