Wall clock time and date at job start Wed Apr 1 2020 04:06:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34855 * 125.96560 * 2 1 4 4 N 1.36315 * 106.68948 * 179.88842 * 3 2 1 5 5 C 1.35412 * 107.40169 * 0.40280 * 4 3 2 6 6 N 1.30102 * 108.62798 * 359.72001 * 5 4 3 7 7 C 1.51040 * 123.98617 * 179.67476 * 5 4 3 8 8 C 1.53392 * 108.21147 * 344.08631 * 7 5 4 9 9 H 1.08992 * 109.53909 * 288.84120 * 8 7 5 10 10 C 1.50707 * 109.50826 * 168.72940 * 8 7 5 11 11 O 1.21282 * 119.99456 * 240.22105 * 10 8 7 12 12 N 1.34772 * 120.00120 * 60.22935 * 10 8 7 13 13 C 1.46497 * 120.00028 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47033 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46959 * 174.93365 * 14 13 12 16 16 C 1.53004 * 115.55104 * 65.29343 * 15 14 13 17 17 N 1.46495 * 109.47139 * 65.14358 * 16 15 14 18 18 C 1.36943 * 119.99823 * 175.04483 * 17 16 15 19 19 H 1.07998 * 119.99537 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99937 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00462 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99749 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47218 * 90.00260 * 22 20 18 24 24 H 1.48505 * 109.46948 * 210.00133 * 22 20 18 25 25 H 1.48492 * 109.47105 * 329.99801 * 22 20 18 26 26 C 1.52993 * 117.49916 * 279.61756 * 15 14 13 27 27 C 1.53001 * 117.49774 * 210.96005 * 15 14 13 28 28 C 1.53153 * 109.24954 * 48.79854 * 8 7 5 29 29 C 1.46480 * 127.77222 * 180.22468 * 4 3 2 30 30 H 1.08995 * 109.46719 * 269.71113 * 1 2 3 31 31 H 1.09003 * 109.47174 * 149.71530 * 1 2 3 32 32 H 1.09001 * 109.46945 * 29.71619 * 1 2 3 33 33 H 1.08004 * 126.65175 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.71611 * 103.74915 * 7 5 4 35 35 H 1.09002 * 109.71843 * 224.39094 * 7 5 4 36 36 H 0.96999 * 119.99974 * 359.97438 * 12 10 8 37 37 H 1.09004 * 109.47257 * 299.99469 * 13 12 10 38 38 H 1.08992 * 109.47043 * 59.99815 * 13 12 10 39 39 H 1.09004 * 109.47136 * 294.93565 * 14 13 12 40 40 H 1.09002 * 109.47342 * 54.93492 * 14 13 12 41 41 H 1.08998 * 109.47030 * 185.15084 * 16 15 14 42 42 H 1.09000 * 109.46756 * 305.14341 * 16 15 14 43 43 H 0.96996 * 120.00308 * 355.04629 * 17 16 15 44 44 H 0.96998 * 120.00553 * 179.97438 * 21 20 18 45 45 H 1.09003 * 117.50026 * 0.02562 * 26 15 14 46 46 H 1.09004 * 117.49925 * 145.02065 * 26 15 14 47 47 H 1.09007 * 117.49840 * 214.98335 * 27 15 14 48 48 H 1.08999 * 117.49887 * 359.97438 * 27 15 14 49 49 H 1.08998 * 109.46795 * 170.51428 * 28 8 7 50 50 H 1.09004 * 109.46765 * 50.52394 * 28 8 7 51 51 H 1.09001 * 109.58387 * 282.87950 * 29 4 3 52 52 H 1.08997 * 109.58366 * 43.29704 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6415 0.0025 5 6 3.5414 -0.7119 -0.0051 6 7 2.2957 -1.0870 -0.0060 7 6 4.7656 -1.5967 -0.0123 8 6 5.9742 -0.7396 -0.4091 9 1 5.9066 -0.4811 -1.4657 10 6 7.2433 -1.5134 -0.1604 11 8 8.0736 -1.0842 0.6124 12 7 7.4556 -2.6823 -0.7969 13 6 8.6894 -3.4342 -0.5556 14 6 8.6795 -4.7134 -1.3949 15 6 10.0198 -5.4350 -1.2406 16 6 10.3242 -5.9692 0.1605 17 7 9.3619 -7.0194 0.5025 18 6 9.4984 -7.7187 1.6720 19 1 10.3152 -7.4955 2.3423 20 6 8.5868 -8.7142 1.9958 21 7 7.5916 -8.9865 1.1786 22 14 8.7726 -9.6675 3.5914 23 1 8.0239 -8.9759 4.6714 24 1 8.2318 -11.0392 3.4143 25 1 10.2097 -9.7455 3.9570 26 6 11.1973 -4.9239 -2.0730 27 6 10.5243 -6.2508 -2.4326 28 6 5.9830 0.5408 0.4313 29 6 4.8149 1.4382 0.0081 30 1 -0.3632 -0.0052 1.0276 31 1 -0.3634 -0.8874 -0.5183 32 1 -0.3633 0.8925 -0.5094 33 1 1.9763 2.1222 0.0004 34 1 4.9225 -2.0154 0.9818 35 1 4.6328 -2.4023 -0.7344 36 1 6.7913 -3.0257 -1.4148 37 1 9.5479 -2.8230 -0.8344 38 1 8.7560 -3.6938 0.5009 39 1 7.8747 -5.3651 -1.0547 40 1 8.5225 -4.4591 -2.4432 41 1 11.3335 -6.3803 0.1812 42 1 10.2479 -5.1570 0.8834 43 1 8.6281 -7.2196 -0.0994 44 1 6.9549 -9.6824 1.4047 45 1 11.0173 -4.0732 -2.7304 46 1 12.1890 -4.9684 -1.6227 47 1 11.0734 -7.1679 -2.2187 48 1 9.9011 -6.2738 -3.3266 49 1 6.9228 1.0706 0.2763 50 1 5.8804 0.2840 1.4857 51 1 4.9998 1.8316 -0.9915 52 1 4.7129 2.2623 0.7142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165741827.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:31 Heat of formation + Delta-G solvation = 43.718480 kcal Electronic energy + Delta-G solvation = -29979.980642 eV Core-core repulsion = 25980.748299 eV Total energy + Delta-G solvation = -3999.232342 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.60618 -40.06634 -38.32867 -36.65120 -34.92247 -33.90418 -33.64935 -31.78721 -30.79694 -30.22896 -29.03312 -27.47776 -25.90966 -24.54427 -23.90658 -22.79843 -22.52053 -21.78715 -20.84303 -20.28001 -19.41991 -18.53376 -17.23639 -17.18445 -16.97432 -16.27398 -15.84529 -15.71343 -15.18628 -14.70458 -14.53735 -14.43966 -14.36501 -14.11738 -14.01902 -13.79106 -13.38022 -13.12209 -13.10824 -12.74555 -12.66109 -12.52852 -12.31970 -12.15225 -11.97163 -11.93965 -11.59335 -11.49626 -11.35453 -11.20344 -10.95341 -10.81419 -10.59707 -10.13929 -10.11375 -9.91732 -9.89625 -9.73644 -9.67231 -9.30752 -9.06139 -8.81895 -8.40996 -6.87754 -5.73757 -3.01578 1.78979 2.46784 2.48509 2.87747 3.01710 3.46136 3.51344 3.52645 3.87788 4.05658 4.10552 4.19988 4.22282 4.62523 4.63692 4.69562 4.73245 4.79531 4.96851 4.98011 5.01792 5.08428 5.11823 5.16463 5.30394 5.32863 5.37984 5.49766 5.51778 5.52970 5.60028 5.67091 5.69656 5.71368 5.76641 5.82810 5.88694 6.08329 6.15042 6.17455 6.21899 6.39768 6.44495 6.46654 6.52673 6.57868 6.77506 6.83781 6.92339 7.41021 7.72986 7.92569 8.11004 8.45391 9.57058 10.15058 10.50592 11.49084 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.002337 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.938269 B =11980.123060 C =13766.186475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.004 4.004 3 C -0.057 4.057 4 N -0.457 5.457 5 C 0.215 3.785 6 N -0.482 5.482 7 C -0.026 4.026 8 C -0.111 4.111 9 H 0.104 0.896 10 C 0.520 3.480 11 O -0.536 6.536 12 N -0.723 5.723 13 C 0.123 3.877 14 C -0.089 4.089 15 C -0.119 4.119 16 C 0.187 3.813 17 N -0.727 5.727 18 C -0.238 4.238 19 H 0.069 0.931 20 C -0.013 4.013 21 N -0.933 5.933 22 Si 0.905 3.095 23 H -0.290 1.290 24 H -0.292 1.292 25 H -0.283 1.283 26 C -0.178 4.178 27 C -0.163 4.163 28 C -0.116 4.116 29 C 0.104 3.896 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.173 0.827 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.400 0.600 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.084 0.916 40 H 0.061 0.939 41 H 0.022 0.978 42 H 0.021 0.979 43 H 0.384 0.616 44 H 0.254 0.746 45 H 0.088 0.912 46 H 0.092 0.908 47 H 0.096 0.904 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.910 23.818 -9.285 26.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.133 4.133 3 C -0.189 4.189 4 N -0.140 5.140 5 C -0.048 4.048 6 N -0.201 5.201 7 C -0.065 4.065 8 C -0.133 4.133 9 H 0.122 0.878 10 C 0.305 3.695 11 O -0.413 6.413 12 N -0.374 5.374 13 C 0.000 4.000 14 C -0.127 4.127 15 C -0.120 4.120 16 C 0.059 3.941 17 N -0.371 5.371 18 C -0.369 4.369 19 H 0.087 0.913 20 C -0.209 4.209 21 N -0.582 5.582 22 Si 0.736 3.264 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.208 1.208 26 C -0.216 4.216 27 C -0.200 4.200 28 C -0.154 4.154 29 C -0.018 4.018 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.190 0.810 34 H 0.117 0.883 35 H 0.121 0.879 36 H 0.235 0.765 37 H 0.084 0.916 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.040 0.960 42 H 0.039 0.961 43 H 0.218 0.782 44 H 0.064 0.936 45 H 0.106 0.894 46 H 0.110 0.890 47 H 0.115 0.885 48 H 0.106 0.894 49 H 0.120 0.880 50 H 0.103 0.897 51 H 0.104 0.896 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.374 23.355 -8.559 25.677 hybrid contribution -0.242 0.069 0.366 0.444 sum -6.616 23.424 -8.193 25.682 Atomic orbital electron populations 1.20005 0.87687 1.02511 1.02137 1.20823 0.96511 0.88285 1.07706 1.22283 0.82845 1.00336 1.13481 1.45381 1.06562 1.07413 1.54639 1.23058 0.94669 0.81491 1.05569 1.69983 0.99620 1.30374 1.20162 1.20149 0.85938 0.95409 1.04995 1.21436 0.93300 0.96081 1.02522 0.87830 1.20186 0.87578 0.81303 0.80470 1.90729 1.46402 1.68600 1.35537 1.46056 1.22725 1.22293 1.46306 1.21410 0.85348 0.91758 1.01486 1.21222 0.97364 0.95228 0.98841 1.21557 0.93695 1.02308 0.94474 1.20195 0.93273 0.91119 0.89479 1.42275 1.31078 1.40148 1.23601 1.19221 1.08841 1.12075 0.96771 0.91303 1.24708 0.97833 0.99765 0.98614 1.69650 1.16673 1.34802 1.37029 0.86216 0.77359 0.79355 0.83430 1.21737 1.21807 1.20837 1.22999 0.97241 0.97747 1.03582 1.22937 1.03491 0.95196 0.98397 1.21734 0.98053 0.94483 1.01144 1.22046 0.81985 0.94410 1.03338 0.91523 0.91171 0.91522 0.80976 0.88331 0.87890 0.76549 0.91610 0.90398 0.89766 0.92037 0.96012 0.96108 0.78180 0.93567 0.89360 0.88987 0.88545 0.89352 0.88008 0.89740 0.89564 0.88765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.42 36.00 0.38 -0.17 16 2 C 0.00 -0.05 7.10 -82.72 -0.59 -0.63 16 3 C -0.06 -0.52 11.55 -16.76 -0.19 -0.72 16 4 N -0.46 -4.26 3.13 -113.75 -0.36 -4.61 16 5 C 0.21 2.48 7.65 -155.24 -1.19 1.29 16 6 N -0.48 -6.60 11.24 -6.88 -0.08 -6.68 16 7 C -0.03 -0.25 5.47 -27.51 -0.15 -0.40 16 8 C -0.11 -0.94 2.55 -91.49 -0.23 -1.17 16 9 H 0.10 0.68 8.12 -51.93 -0.42 0.26 16 10 C 0.52 6.09 7.13 -10.98 -0.08 6.01 16 11 O -0.54 -8.36 15.83 5.56 0.09 -8.27 16 12 N -0.72 -8.02 5.46 -60.29 -0.33 -8.35 16 13 C 0.12 1.67 5.41 -4.04 -0.02 1.64 16 14 C -0.09 -1.21 5.12 -26.73 -0.14 -1.35 16 15 C -0.12 -1.85 1.56 -154.51 -0.24 -2.09 16 16 C 0.19 3.73 5.93 -4.04 -0.02 3.71 16 17 N -0.73 -18.09 5.52 -59.91 -0.33 -18.42 16 18 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 19 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 20 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 21 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 22 Si 0.91 22.66 29.55 -169.99 -5.02 17.64 16 23 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 25 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 26 C -0.18 -2.30 9.94 -26.70 -0.27 -2.56 16 27 C -0.16 -2.36 9.94 -26.70 -0.27 -2.62 16 28 C -0.12 -0.89 4.67 -26.52 -0.12 -1.02 16 29 C 0.10 0.64 6.98 -3.92 -0.03 0.61 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.17 1.00 8.06 -52.48 -0.42 0.58 16 34 H 0.10 1.07 8.11 -51.93 -0.42 0.65 16 35 H 0.10 0.90 7.95 -51.93 -0.41 0.49 16 36 H 0.40 3.45 8.20 -40.82 -0.33 3.11 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.08 1.30 7.23 -51.93 -0.38 0.93 16 39 H 0.08 1.34 7.49 -51.93 -0.39 0.95 16 40 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 41 H 0.02 0.45 8.09 -51.93 -0.42 0.03 16 42 H 0.02 0.43 7.11 -51.93 -0.37 0.06 16 43 H 0.38 10.00 7.03 -40.82 -0.29 9.71 16 44 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 45 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 46 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.10 0.75 7.79 -51.93 -0.40 0.34 16 50 H 0.08 0.78 8.12 -51.93 -0.42 0.36 16 51 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 420.97 15.07 6.34 6.34 Total: -1.00 -35.40 420.97 -11.24 -46.64 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -8.87 Total: 9.87 kcal Atomic # 6 Polarization: -3.35 SS G_CDS: -3.41 Total: -6.76 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.37 Total: -65.45 kcal Atomic # 8 Polarization: -8.36 SS G_CDS: 0.09 Total: -8.27 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.40 -11.24 -46.64 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165741827.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.361 kcal (2) G-P(sol) polarization free energy of solvation -35.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds