Wall clock time and date at job start Wed Apr 1 2020 04:06:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34855 * 125.96560 * 2 1 4 4 N 1.36315 * 106.68948 * 179.88842 * 3 2 1 5 5 C 1.35412 * 107.40169 * 0.40280 * 4 3 2 6 6 N 1.30102 * 108.62798 * 359.72001 * 5 4 3 7 7 C 1.51040 * 123.98617 * 179.67476 * 5 4 3 8 8 C 1.53392 * 108.21147 * 344.08631 * 7 5 4 9 9 H 1.08992 * 109.53909 * 288.84120 * 8 7 5 10 10 C 1.50707 * 109.50826 * 168.72940 * 8 7 5 11 11 O 1.21282 * 119.99456 * 240.22105 * 10 8 7 12 12 N 1.34772 * 120.00120 * 60.22935 * 10 8 7 13 13 C 1.46497 * 120.00028 * 179.97438 * 12 10 8 14 14 C 1.53003 * 109.47033 * 179.97438 * 13 12 10 15 15 C 1.53000 * 109.46959 * 174.93365 * 14 13 12 16 16 C 1.53004 * 115.55104 * 65.29343 * 15 14 13 17 17 N 1.46495 * 109.47139 * 65.14358 * 16 15 14 18 18 C 1.36943 * 119.99823 * 175.04483 * 17 16 15 19 19 H 1.07998 * 119.99537 * 0.02562 * 18 17 16 20 20 C 1.38807 * 119.99937 * 180.02562 * 18 17 16 21 21 N 1.31619 * 120.00462 * 0.02562 * 20 18 17 22 22 Si 1.86804 * 119.99749 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47218 * 90.00260 * 22 20 18 24 24 H 1.48505 * 109.46948 * 210.00133 * 22 20 18 25 25 H 1.48492 * 109.47105 * 329.99801 * 22 20 18 26 26 C 1.52993 * 117.49916 * 279.61756 * 15 14 13 27 27 C 1.53001 * 117.49774 * 210.96005 * 15 14 13 28 28 C 1.53153 * 109.24954 * 48.79854 * 8 7 5 29 29 C 1.46480 * 127.77222 * 180.22468 * 4 3 2 30 30 H 1.08995 * 109.46719 * 269.71113 * 1 2 3 31 31 H 1.09003 * 109.47174 * 149.71530 * 1 2 3 32 32 H 1.09001 * 109.46945 * 29.71619 * 1 2 3 33 33 H 1.08004 * 126.65175 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.71611 * 103.74915 * 7 5 4 35 35 H 1.09002 * 109.71843 * 224.39094 * 7 5 4 36 36 H 0.96999 * 119.99974 * 359.97438 * 12 10 8 37 37 H 1.09004 * 109.47257 * 299.99469 * 13 12 10 38 38 H 1.08992 * 109.47043 * 59.99815 * 13 12 10 39 39 H 1.09004 * 109.47136 * 294.93565 * 14 13 12 40 40 H 1.09002 * 109.47342 * 54.93492 * 14 13 12 41 41 H 1.08998 * 109.47030 * 185.15084 * 16 15 14 42 42 H 1.09000 * 109.46756 * 305.14341 * 16 15 14 43 43 H 0.96996 * 120.00308 * 355.04629 * 17 16 15 44 44 H 0.96998 * 120.00553 * 179.97438 * 21 20 18 45 45 H 1.09003 * 117.50026 * 0.02562 * 26 15 14 46 46 H 1.09004 * 117.49925 * 145.02065 * 26 15 14 47 47 H 1.09007 * 117.49840 * 214.98335 * 27 15 14 48 48 H 1.08999 * 117.49887 * 359.97438 * 27 15 14 49 49 H 1.08998 * 109.46795 * 170.51428 * 28 8 7 50 50 H 1.09004 * 109.46765 * 50.52394 * 28 8 7 51 51 H 1.09001 * 109.58387 * 282.87950 * 29 4 3 52 52 H 1.08997 * 109.58366 * 43.29704 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6415 0.0025 5 6 3.5414 -0.7119 -0.0051 6 7 2.2957 -1.0870 -0.0060 7 6 4.7656 -1.5967 -0.0123 8 6 5.9742 -0.7396 -0.4091 9 1 5.9066 -0.4811 -1.4657 10 6 7.2433 -1.5134 -0.1604 11 8 8.0736 -1.0842 0.6124 12 7 7.4556 -2.6823 -0.7969 13 6 8.6894 -3.4342 -0.5556 14 6 8.6795 -4.7134 -1.3949 15 6 10.0198 -5.4350 -1.2406 16 6 10.3242 -5.9692 0.1605 17 7 9.3619 -7.0194 0.5025 18 6 9.4984 -7.7187 1.6720 19 1 10.3152 -7.4955 2.3423 20 6 8.5868 -8.7142 1.9958 21 7 7.5916 -8.9865 1.1786 22 14 8.7726 -9.6675 3.5914 23 1 8.0239 -8.9759 4.6714 24 1 8.2318 -11.0392 3.4143 25 1 10.2097 -9.7455 3.9570 26 6 11.1973 -4.9239 -2.0730 27 6 10.5243 -6.2508 -2.4326 28 6 5.9830 0.5408 0.4313 29 6 4.8149 1.4382 0.0081 30 1 -0.3632 -0.0052 1.0276 31 1 -0.3634 -0.8874 -0.5183 32 1 -0.3633 0.8925 -0.5094 33 1 1.9763 2.1222 0.0004 34 1 4.9225 -2.0154 0.9818 35 1 4.6328 -2.4023 -0.7344 36 1 6.7913 -3.0257 -1.4148 37 1 9.5479 -2.8230 -0.8344 38 1 8.7560 -3.6938 0.5009 39 1 7.8747 -5.3651 -1.0547 40 1 8.5225 -4.4591 -2.4432 41 1 11.3335 -6.3803 0.1812 42 1 10.2479 -5.1570 0.8834 43 1 8.6281 -7.2196 -0.0994 44 1 6.9549 -9.6824 1.4047 45 1 11.0173 -4.0732 -2.7304 46 1 12.1890 -4.9684 -1.6227 47 1 11.0734 -7.1679 -2.2187 48 1 9.9011 -6.2738 -3.3266 49 1 6.9228 1.0706 0.2763 50 1 5.8804 0.2840 1.4857 51 1 4.9998 1.8316 -0.9915 52 1 4.7129 2.2623 0.7142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165741827.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:30 Heat of formation + Delta-G solvation = 21.172594 kcal Electronic energy + Delta-G solvation = -29980.958305 eV Core-core repulsion = 25980.748299 eV Total energy + Delta-G solvation = -4000.210005 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.33895 -41.03817 -39.56413 -37.40650 -36.10294 -35.75788 -34.40618 -32.78207 -32.46767 -31.29358 -29.81402 -28.21879 -27.71688 -25.38109 -24.72982 -24.62788 -23.53239 -22.90710 -21.70072 -21.13846 -20.15289 -19.89164 -19.01767 -18.05659 -17.86477 -17.15106 -16.82580 -16.70506 -16.58517 -16.19127 -15.74391 -15.27790 -15.27112 -15.17631 -14.99445 -14.83108 -14.60107 -14.52799 -14.17375 -13.89886 -13.83324 -13.49497 -13.15702 -13.12759 -13.02998 -12.83141 -12.80389 -12.63233 -12.47337 -12.29472 -12.26508 -12.17223 -12.14800 -11.93484 -11.80993 -11.14891 -10.98177 -10.90001 -10.84393 -10.53722 -10.47734 -10.10419 -9.13666 -8.96792 -7.95115 -5.22281 1.07102 1.45097 1.46740 1.52150 1.54786 1.85006 2.07033 2.10697 2.53773 2.91842 3.14161 3.38001 3.47526 3.48605 3.57329 3.82938 3.85082 3.96711 4.00895 4.05634 4.09056 4.12312 4.24191 4.25659 4.34354 4.45183 4.47015 4.50517 4.51559 4.62127 4.66208 4.73028 4.84213 4.85392 4.90522 4.94136 4.99480 5.03051 5.06418 5.10354 5.16941 5.21203 5.28122 5.35073 5.37301 5.37746 5.44622 5.48460 5.88265 6.23473 6.27426 6.50393 7.16172 7.18770 7.34629 8.11539 8.36702 9.28062 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009727 B = 0.002337 C = 0.002033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2877.938269 B =11980.123060 C =13766.186475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.040 4.040 3 C -0.043 4.043 4 N -0.454 5.454 5 C 0.194 3.806 6 N -0.528 5.528 7 C -0.022 4.022 8 C -0.096 4.096 9 H 0.133 0.867 10 C 0.519 3.481 11 O -0.577 6.577 12 N -0.715 5.715 13 C 0.133 3.867 14 C -0.076 4.076 15 C -0.141 4.141 16 C 0.186 3.814 17 N -0.735 5.735 18 C -0.245 4.245 19 H 0.070 0.930 20 C -0.072 4.072 21 N -0.965 5.965 22 Si 0.968 3.032 23 H -0.289 1.289 24 H -0.293 1.293 25 H -0.271 1.271 26 C -0.147 4.147 27 C -0.166 4.166 28 C -0.114 4.114 29 C 0.106 3.894 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.210 0.790 34 H 0.077 0.923 35 H 0.109 0.891 36 H 0.414 0.586 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.376 0.624 44 H 0.251 0.749 45 H 0.118 0.882 46 H 0.094 0.906 47 H 0.076 0.924 48 H 0.108 0.892 49 H 0.109 0.891 50 H 0.062 0.938 51 H 0.114 0.886 52 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 26.415 -10.898 29.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.169 4.169 3 C -0.176 4.176 4 N -0.137 5.137 5 C -0.068 4.068 6 N -0.249 5.249 7 C -0.061 4.061 8 C -0.118 4.118 9 H 0.151 0.849 10 C 0.306 3.694 11 O -0.457 6.457 12 N -0.366 5.366 13 C 0.009 3.991 14 C -0.113 4.113 15 C -0.141 4.141 16 C 0.060 3.940 17 N -0.378 5.378 18 C -0.377 4.377 19 H 0.088 0.912 20 C -0.265 4.265 21 N -0.616 5.616 22 Si 0.798 3.202 23 H -0.217 1.217 24 H -0.219 1.219 25 H -0.196 1.196 26 C -0.185 4.185 27 C -0.203 4.203 28 C -0.152 4.152 29 C -0.015 4.015 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.111 0.889 33 H 0.227 0.773 34 H 0.095 0.905 35 H 0.127 0.873 36 H 0.251 0.749 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.034 0.966 42 H 0.031 0.969 43 H 0.209 0.791 44 H 0.060 0.940 45 H 0.137 0.863 46 H 0.113 0.887 47 H 0.095 0.905 48 H 0.127 0.873 49 H 0.127 0.873 50 H 0.081 0.919 51 H 0.132 0.868 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.096 25.972 -10.190 28.557 hybrid contribution -0.272 -0.695 0.892 1.163 sum -6.367 25.277 -9.298 27.675 Atomic orbital electron populations 1.20047 0.86328 1.03185 1.02418 1.21384 0.97835 0.88538 1.09137 1.22845 0.82317 1.01403 1.11050 1.45599 1.07674 1.06894 1.53494 1.23138 0.94392 0.82755 1.06547 1.69910 1.01031 1.32394 1.21539 1.20083 0.86268 0.95758 1.04008 1.21375 0.90461 0.95569 1.04359 0.84880 1.20752 0.88106 0.81156 0.79411 1.90710 1.48105 1.69643 1.37239 1.45975 1.22340 1.21951 1.46377 1.21136 0.86694 0.92173 0.99059 1.21091 0.95384 0.94221 1.00640 1.21413 0.96095 1.04363 0.92278 1.20261 0.91752 0.89517 0.92492 1.42425 1.31776 1.40907 1.22663 1.19591 1.08436 1.11972 0.97684 0.91240 1.25482 0.97942 1.01181 1.01871 1.69794 1.17534 1.35493 1.38748 0.85216 0.77714 0.77652 0.79657 1.21678 1.21940 1.19617 1.23093 0.95960 0.97643 1.01758 1.22974 1.03791 0.95265 0.98250 1.21704 0.99322 0.94443 0.99730 1.22282 0.79764 0.93867 1.05550 0.91379 0.92434 0.88912 0.77326 0.90500 0.87320 0.74906 0.90920 0.94484 0.92580 0.88525 0.96574 0.96928 0.79116 0.94029 0.86335 0.88743 0.90501 0.87339 0.87287 0.91946 0.86804 0.86557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.98 10.42 71.24 0.74 -0.24 16 2 C -0.04 -0.88 7.10 41.40 0.29 -0.59 16 3 C -0.04 -0.68 11.55 83.22 0.96 0.28 16 4 N -0.45 -7.53 3.13 -513.79 -1.61 -9.14 16 5 C 0.19 4.41 7.65 138.23 1.06 5.47 16 6 N -0.53 -14.66 11.24 -175.69 -1.98 -16.64 16 7 C -0.02 -0.43 5.47 30.09 0.16 -0.26 16 8 C -0.10 -1.49 2.55 -11.35 -0.03 -1.52 16 9 H 0.13 1.34 8.12 -2.39 -0.02 1.32 16 10 C 0.52 11.94 7.13 87.66 0.63 12.57 16 11 O -0.58 -18.17 15.83 -3.04 -0.05 -18.22 16 12 N -0.72 -15.44 5.46 -463.06 -2.53 -17.97 16 13 C 0.13 3.60 5.41 86.38 0.47 4.06 16 14 C -0.08 -2.01 5.12 30.60 0.16 -1.85 16 15 C -0.14 -4.26 1.56 -52.18 -0.08 -4.34 16 16 C 0.19 7.61 5.93 86.38 0.51 8.13 16 17 N -0.74 -37.72 5.52 -343.46 -1.89 -39.61 16 18 C -0.24 -14.03 9.99 84.03 0.84 -13.19 16 19 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 20 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 21 N -0.96 -59.57 13.06 21.65 0.28 -59.29 16 22 Si 0.97 47.34 29.55 68.60 2.03 49.37 16 23 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 24 H -0.29 -14.28 7.11 99.48 0.71 -13.58 16 25 H -0.27 -12.61 7.11 99.48 0.71 -11.90 16 26 C -0.15 -3.40 9.94 30.61 0.30 -3.10 16 27 C -0.17 -4.52 9.94 30.62 0.30 -4.22 16 28 C -0.11 -1.58 4.67 30.73 0.14 -1.43 16 29 C 0.11 0.96 6.98 86.47 0.60 1.57 16 30 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.21 1.58 8.06 -2.91 -0.02 1.55 16 34 H 0.08 1.81 8.11 -2.39 -0.02 1.79 16 35 H 0.11 1.92 7.95 -2.39 -0.02 1.90 16 36 H 0.41 6.63 8.20 -92.71 -0.76 5.87 16 37 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 38 H 0.04 1.30 7.23 -2.39 -0.02 1.29 16 39 H 0.06 1.82 7.49 -2.38 -0.02 1.80 16 40 H 0.10 1.90 8.09 -2.39 -0.02 1.88 16 41 H 0.02 0.68 8.09 -2.39 -0.02 0.66 16 42 H 0.01 0.55 7.11 -2.39 -0.02 0.53 16 43 H 0.38 20.29 7.03 -92.71 -0.65 19.64 16 44 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 45 H 0.12 2.10 8.14 -2.39 -0.02 2.08 16 46 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 47 H 0.08 2.40 8.14 -2.38 -0.02 2.38 16 48 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 49 H 0.11 1.39 7.79 -2.39 -0.02 1.38 16 50 H 0.06 1.15 8.12 -2.38 -0.02 1.13 16 51 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 52 H 0.12 0.61 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -80.25 420.97 1.30 -78.95 By element: Atomic # 1 Polarization: 35.47 SS G_CDS: -0.49 Total: 34.98 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: 7.53 Total: -2.43 kcal Atomic # 7 Polarization: -134.91 SS G_CDS: -7.73 Total: -142.64 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.05 Total: -18.22 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 2.03 Total: 49.37 kcal Total: -80.25 1.30 -78.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165741827.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.122 kcal (2) G-P(sol) polarization free energy of solvation -80.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.297 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds