Wall clock time and date at job start Wed Apr 1 2020 04:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38772 * 119.90380 * 2 1 4 4 N 1.31774 * 120.12696 * 179.97438 * 3 2 1 5 5 C 1.33034 * 119.92397 * 0.02562 * 4 3 2 6 6 C 1.48147 * 120.09433 * 180.02562 * 5 4 3 7 7 O 1.21518 * 119.99634 * 186.84376 * 6 5 4 8 8 N 1.34773 * 120.00160 * 6.83898 * 6 5 4 9 9 C 1.46501 * 120.00191 * 190.38517 * 8 6 5 10 10 C 1.52991 * 109.47196 * 89.99850 * 9 8 6 11 11 C 1.53003 * 109.47433 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47384 * 180.02562 * 11 10 9 13 13 C 1.36936 * 119.99842 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00185 * 359.97438 * 13 12 11 15 15 C 1.38812 * 120.00081 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00168 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99673 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47057 * 89.99941 * 17 15 13 19 19 H 1.48503 * 109.46925 * 209.99744 * 17 15 13 20 20 H 1.48505 * 109.46859 * 329.99567 * 17 15 13 21 21 C 1.46504 * 119.99803 * 10.38947 * 8 6 5 22 22 C 1.52993 * 109.47073 * 133.72739 * 21 8 6 23 23 C 1.54263 * 110.03361 * 302.05907 * 22 21 8 24 24 C 1.54968 * 104.15824 * 217.13884 * 23 22 21 25 25 C 1.54886 * 102.78038 * 37.88583 * 24 23 22 26 26 C 1.53876 * 110.03237 * 184.83830 * 22 21 8 27 27 C 1.39403 * 119.80816 * 359.97438 * 5 4 3 28 28 N 1.32105 * 119.87782 * 359.97438 * 27 5 4 29 29 H 1.08994 * 109.47307 * 90.00538 * 1 2 3 30 30 H 1.09006 * 109.46752 * 210.00039 * 1 2 3 31 31 H 1.08998 * 109.47105 * 329.99700 * 1 2 3 32 32 H 1.07998 * 119.93865 * 359.97252 * 3 2 1 33 33 H 1.08997 * 109.47024 * 210.00376 * 9 8 6 34 34 H 1.09002 * 109.46692 * 329.99890 * 9 8 6 35 35 H 1.08997 * 109.47563 * 300.00196 * 10 9 8 36 36 H 1.09002 * 109.47267 * 60.00392 * 10 9 8 37 37 H 1.08997 * 109.46928 * 300.00612 * 11 10 9 38 38 H 1.09002 * 109.46551 * 59.99981 * 11 10 9 39 39 H 0.97001 * 119.99845 * 359.97438 * 12 11 10 40 40 H 0.97001 * 119.99672 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.46855 * 253.72779 * 21 8 6 42 42 H 1.08994 * 109.47110 * 13.72178 * 21 8 6 43 43 H 1.09006 * 110.01982 * 63.45342 * 22 21 8 44 44 H 1.08996 * 110.48853 * 335.78245 * 23 22 21 45 45 H 1.09000 * 110.49016 * 98.42992 * 23 22 21 46 46 H 1.08998 * 110.72208 * 279.56689 * 24 23 22 47 47 H 1.09000 * 110.92135 * 156.29571 * 24 23 22 48 48 H 1.09001 * 110.49059 * 203.40506 * 25 24 23 49 49 H 1.08997 * 110.59627 * 80.81632 * 25 24 23 50 50 H 1.08994 * 110.03642 * 238.56736 * 26 22 21 51 51 H 1.09002 * 110.03036 * 0.02562 * 26 22 21 52 52 H 1.08004 * 120.06008 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1847 0.0577 0.0005 6 6 5.6661 0.0591 0.0017 7 8 6.2747 -0.9852 -0.1238 8 7 6.3389 1.2185 0.1417 9 6 7.7860 1.2575 -0.0830 10 6 8.0654 1.5694 -1.5545 11 6 9.5768 1.6108 -1.7891 12 7 9.8443 1.9102 -3.1980 13 6 11.1353 1.9979 -3.6461 14 1 11.9563 1.8468 -2.9609 15 6 11.3888 2.2810 -4.9812 16 7 12.6297 2.3658 -5.4118 17 14 9.9688 2.5431 -6.1664 18 1 9.6015 3.9817 -6.1883 19 1 10.3759 2.1153 -7.5289 20 1 8.8003 1.7404 -5.7240 21 6 5.6229 2.4398 0.5187 22 6 6.3919 3.1597 1.6282 23 6 6.5631 2.2260 2.8442 24 6 6.4154 3.1658 4.0675 25 6 5.3033 4.1445 3.6155 26 6 5.5917 4.3793 2.1183 27 6 3.4867 -1.1490 0.0005 28 7 2.1657 -1.1452 0.0010 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6563 2.1368 -0.0004 33 1 8.2302 2.0311 0.5432 34 1 8.2194 0.2904 0.1720 35 1 7.6212 0.7958 -2.1807 36 1 7.6320 2.5365 -1.8095 37 1 10.0206 2.3847 -1.1629 38 1 10.0106 0.6439 -1.5339 39 1 9.1069 2.0455 -3.8136 40 1 12.8068 2.5633 -6.3449 41 1 5.5391 3.0943 -0.3489 42 1 4.6263 2.1810 0.8762 43 1 7.3679 3.4769 1.2606 44 1 5.7839 1.4639 2.8526 45 1 7.5501 1.7637 2.8343 46 1 7.3462 3.7000 4.2580 47 1 6.1039 2.6086 4.9510 48 1 5.3715 5.0813 4.1686 49 1 4.3194 3.6947 3.7485 50 1 6.1795 5.2880 1.9894 51 1 4.6553 4.4579 1.5659 52 1 4.0250 -2.0854 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001177199712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:11 Heat of formation + Delta-G solvation = 26.776081 kcal Electronic energy + Delta-G solvation = -30858.350255 eV Core-core repulsion = 26858.383235 eV Total energy + Delta-G solvation = -3999.967020 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.84170 -39.97796 -38.41860 -36.18552 -35.41547 -34.66761 -33.30279 -32.23954 -30.56322 -29.93682 -28.94492 -28.71820 -26.03408 -25.09117 -24.86129 -23.64740 -22.42015 -21.13234 -20.89127 -20.25639 -19.60216 -18.39504 -17.65160 -17.50521 -16.59125 -16.20943 -15.99189 -15.82048 -15.35966 -15.23752 -14.92310 -14.56505 -14.44005 -13.97738 -13.81904 -13.58241 -13.47810 -13.32161 -13.14270 -13.07774 -12.82970 -12.75110 -12.28414 -12.07436 -11.74827 -11.51128 -11.35786 -11.34410 -11.29068 -11.21316 -11.03883 -10.90202 -10.88710 -10.74500 -10.58318 -10.44306 -10.36207 -10.10218 -9.68660 -9.56233 -9.27027 -8.85764 -8.68096 -7.19182 -5.73323 -3.08396 -0.03901 0.56080 2.41582 2.71098 3.31548 3.40251 3.43780 3.47439 3.49405 3.60003 3.90820 4.19850 4.36703 4.41447 4.45809 4.50482 4.60070 4.62690 4.94679 4.98230 5.01460 5.07789 5.14684 5.15040 5.19974 5.26309 5.35912 5.39964 5.40867 5.43529 5.55933 5.58979 5.62477 5.66566 5.70701 5.75095 5.82669 5.87075 5.92566 5.95088 6.01832 6.06672 6.08460 6.21034 6.30085 6.49326 6.64783 6.77477 6.80054 7.12772 7.28157 7.91379 8.03307 8.46003 9.25112 9.97767 10.17985 11.45233 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009027 B = 0.002917 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.227076 B = 9597.857167 C =11440.667080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.100 3.900 3 C 0.043 3.957 4 N -0.398 5.398 5 C 0.023 3.977 6 C 0.572 3.428 7 O -0.524 6.524 8 N -0.585 5.585 9 C 0.113 3.887 10 C -0.142 4.142 11 C 0.161 3.839 12 N -0.757 5.757 13 C -0.242 4.242 14 H 0.091 0.909 15 C 0.003 3.997 16 N -0.935 5.935 17 Si 0.885 3.115 18 H -0.284 1.284 19 H -0.291 1.291 20 H -0.278 1.278 21 C 0.098 3.902 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.126 4.126 25 C -0.123 4.123 26 C -0.115 4.115 27 C 0.117 3.883 28 N -0.441 5.441 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.177 0.823 33 H 0.085 0.915 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.027 0.973 38 H 0.029 0.971 39 H 0.360 0.640 40 H 0.259 0.741 41 H 0.065 0.935 42 H 0.126 0.874 43 H 0.079 0.921 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.062 0.938 50 H 0.066 0.934 51 H 0.066 0.934 52 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.707 0.997 20.201 34.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.042 4.042 3 C -0.119 4.119 4 N -0.115 5.115 5 C -0.117 4.117 6 C 0.357 3.643 7 O -0.400 6.400 8 N -0.315 5.315 9 C -0.009 4.009 10 C -0.181 4.181 11 C 0.034 3.966 12 N -0.402 5.402 13 C -0.372 4.372 14 H 0.108 0.892 15 C -0.193 4.193 16 N -0.583 5.583 17 Si 0.715 3.285 18 H -0.211 1.211 19 H -0.217 1.217 20 H -0.204 1.204 21 C -0.025 4.025 22 C -0.132 4.132 23 C -0.151 4.151 24 C -0.164 4.164 25 C -0.161 4.161 26 C -0.153 4.153 27 C -0.042 4.042 28 N -0.156 5.156 29 H 0.106 0.894 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.194 0.806 33 H 0.103 0.897 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.045 0.955 38 H 0.046 0.954 39 H 0.193 0.807 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.143 0.857 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -27.063 0.416 20.128 33.730 hybrid contribution -0.852 0.385 -1.144 1.477 sum -27.914 0.801 18.984 33.768 Atomic orbital electron populations 1.20775 0.87239 1.04335 1.03947 1.22676 0.98868 0.89728 0.92889 1.23851 0.90655 0.99558 0.97832 1.68661 1.08452 1.27609 1.06802 1.22277 0.96120 0.91000 1.02299 1.17649 0.84837 0.84112 0.77716 1.90827 1.68195 1.31020 1.49916 1.47768 1.08854 1.08614 1.66290 1.21599 0.78682 1.03788 0.96865 1.22106 0.98569 1.01888 0.95570 1.20508 0.91196 0.98168 0.86766 1.42706 1.05108 1.87281 1.05123 1.19078 0.83408 1.40498 0.94227 0.89164 1.24671 0.95887 1.01931 0.96778 1.69703 1.17261 1.55917 1.15454 0.86535 0.82672 0.77983 0.81303 1.21100 1.21690 1.20403 1.22643 0.97544 0.85184 0.97099 1.22204 0.99989 0.95472 0.95556 1.22363 1.01748 0.97303 0.93713 1.22515 0.98886 0.97338 0.97623 1.22341 0.98671 0.99224 0.95845 1.22099 1.00089 0.97443 0.95714 1.23839 0.89852 0.99378 0.91151 1.68494 1.08280 1.29002 1.09866 0.89431 0.89797 0.89799 0.80641 0.89701 0.89324 0.91871 0.91906 0.95472 0.95353 0.80736 0.93094 0.91632 0.85691 0.90296 0.92187 0.91568 0.91434 0.91918 0.91838 0.91969 0.91506 0.91477 0.79935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.39 10.19 36.00 0.37 -0.02 16 2 C 0.10 0.73 6.79 -82.28 -0.56 0.17 16 3 C 0.04 0.30 10.88 -17.38 -0.19 0.11 16 4 N -0.40 -3.80 6.33 -9.61 -0.06 -3.86 16 5 C 0.02 0.26 6.54 -82.84 -0.54 -0.28 16 6 C 0.57 7.79 7.62 -12.19 -0.09 7.70 16 7 O -0.52 -8.63 15.92 5.35 0.09 -8.55 16 8 N -0.58 -7.20 2.29 -174.70 -0.40 -7.60 16 9 C 0.11 1.51 5.21 -4.05 -0.02 1.49 16 10 C -0.14 -2.33 5.65 -26.73 -0.15 -2.48 16 11 C 0.16 3.24 6.26 -4.04 -0.03 3.22 16 12 N -0.76 -18.96 5.41 -59.91 -0.32 -19.29 16 13 C -0.24 -7.13 10.47 -15.06 -0.16 -7.29 16 14 H 0.09 2.82 8.06 -52.49 -0.42 2.40 16 15 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 16 N -0.94 -30.12 13.97 55.49 0.78 -29.35 16 17 Si 0.88 22.88 27.74 -169.99 -4.71 18.17 16 18 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 19 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 20 H -0.28 -6.86 6.52 56.52 0.37 -6.50 16 21 C 0.10 0.98 4.23 -4.04 -0.02 0.96 16 22 C -0.11 -1.01 2.43 -89.51 -0.22 -1.22 16 23 C -0.11 -1.01 5.78 -25.03 -0.14 -1.16 16 24 C -0.13 -0.96 6.91 -24.70 -0.17 -1.13 16 25 C -0.12 -0.85 6.83 -25.07 -0.17 -1.02 16 26 C -0.12 -0.86 6.46 -25.61 -0.17 -1.03 16 27 C 0.12 1.25 10.77 -17.00 -0.18 1.07 16 28 N -0.44 -4.33 10.41 -8.95 -0.09 -4.43 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.12 8.08 -51.93 -0.42 -0.30 16 32 H 0.18 0.58 8.06 -52.49 -0.42 0.15 16 33 H 0.08 1.00 5.90 -51.93 -0.31 0.69 16 34 H 0.09 1.29 7.31 -51.93 -0.38 0.91 16 35 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 36 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.36 8.86 5.53 -40.82 -0.23 8.63 16 40 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.13 1.19 4.50 -66.49 -0.30 0.89 16 43 H 0.08 0.77 6.65 -51.93 -0.35 0.42 16 44 H 0.06 0.58 7.85 -51.93 -0.41 0.18 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 51 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 52 H 0.18 1.83 7.66 -52.48 -0.40 1.43 16 LS Contribution 412.76 15.07 6.22 6.22 Total: -1.00 -35.36 412.76 -9.74 -45.11 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.69 Total: 4.50 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: -2.54 Total: -0.93 kcal Atomic # 7 Polarization: -64.42 SS G_CDS: -0.10 Total: -64.52 kcal Atomic # 8 Polarization: -8.63 SS G_CDS: 0.09 Total: -8.55 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -4.71 Total: 18.17 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.36 -9.74 -45.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177199712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.883 kcal (2) G-P(sol) polarization free energy of solvation -35.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds