Wall clock time and date at job start Wed Apr 1 2020 04:50:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38772 * 119.90380 * 2 1 4 4 N 1.31774 * 120.12696 * 179.97438 * 3 2 1 5 5 C 1.33034 * 119.92397 * 0.02562 * 4 3 2 6 6 C 1.48147 * 120.09433 * 180.02562 * 5 4 3 7 7 O 1.21518 * 119.99634 * 186.84376 * 6 5 4 8 8 N 1.34773 * 120.00160 * 6.83898 * 6 5 4 9 9 C 1.46501 * 120.00191 * 190.38517 * 8 6 5 10 10 C 1.52991 * 109.47196 * 89.99850 * 9 8 6 11 11 C 1.53003 * 109.47433 * 179.97438 * 10 9 8 12 12 N 1.46499 * 109.47384 * 180.02562 * 11 10 9 13 13 C 1.36936 * 119.99842 * 180.02562 * 12 11 10 14 14 H 1.08000 * 120.00185 * 359.97438 * 13 12 11 15 15 C 1.38812 * 120.00081 * 179.97438 * 13 12 11 16 16 N 1.31615 * 120.00168 * 179.97438 * 15 13 12 17 17 Si 1.86808 * 119.99673 * 0.02562 * 15 13 12 18 18 H 1.48494 * 109.47057 * 89.99941 * 17 15 13 19 19 H 1.48503 * 109.46925 * 209.99744 * 17 15 13 20 20 H 1.48505 * 109.46859 * 329.99567 * 17 15 13 21 21 C 1.46504 * 119.99803 * 10.38947 * 8 6 5 22 22 C 1.52993 * 109.47073 * 133.72739 * 21 8 6 23 23 C 1.54263 * 110.03361 * 302.05907 * 22 21 8 24 24 C 1.54968 * 104.15824 * 217.13884 * 23 22 21 25 25 C 1.54886 * 102.78038 * 37.88583 * 24 23 22 26 26 C 1.53876 * 110.03237 * 184.83830 * 22 21 8 27 27 C 1.39403 * 119.80816 * 359.97438 * 5 4 3 28 28 N 1.32105 * 119.87782 * 359.97438 * 27 5 4 29 29 H 1.08994 * 109.47307 * 90.00538 * 1 2 3 30 30 H 1.09006 * 109.46752 * 210.00039 * 1 2 3 31 31 H 1.08998 * 109.47105 * 329.99700 * 1 2 3 32 32 H 1.07998 * 119.93865 * 359.97252 * 3 2 1 33 33 H 1.08997 * 109.47024 * 210.00376 * 9 8 6 34 34 H 1.09002 * 109.46692 * 329.99890 * 9 8 6 35 35 H 1.08997 * 109.47563 * 300.00196 * 10 9 8 36 36 H 1.09002 * 109.47267 * 60.00392 * 10 9 8 37 37 H 1.08997 * 109.46928 * 300.00612 * 11 10 9 38 38 H 1.09002 * 109.46551 * 59.99981 * 11 10 9 39 39 H 0.97001 * 119.99845 * 359.97438 * 12 11 10 40 40 H 0.97001 * 119.99672 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.46855 * 253.72779 * 21 8 6 42 42 H 1.08994 * 109.47110 * 13.72178 * 21 8 6 43 43 H 1.09006 * 110.01982 * 63.45342 * 22 21 8 44 44 H 1.08996 * 110.48853 * 335.78245 * 23 22 21 45 45 H 1.09000 * 110.49016 * 98.42992 * 23 22 21 46 46 H 1.08998 * 110.72208 * 279.56689 * 24 23 22 47 47 H 1.09000 * 110.92135 * 156.29571 * 24 23 22 48 48 H 1.09001 * 110.49059 * 203.40506 * 25 24 23 49 49 H 1.08997 * 110.59627 * 80.81632 * 25 24 23 50 50 H 1.08994 * 110.03642 * 238.56736 * 26 22 21 51 51 H 1.09002 * 110.03036 * 0.02562 * 26 22 21 52 52 H 1.08004 * 120.06008 * 180.02562 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1988 1.2030 0.0000 4 7 3.5165 1.2081 0.0005 5 6 4.1847 0.0577 0.0005 6 6 5.6661 0.0591 0.0017 7 8 6.2747 -0.9852 -0.1238 8 7 6.3389 1.2185 0.1417 9 6 7.7860 1.2575 -0.0830 10 6 8.0654 1.5694 -1.5545 11 6 9.5768 1.6108 -1.7891 12 7 9.8443 1.9102 -3.1980 13 6 11.1353 1.9979 -3.6461 14 1 11.9563 1.8468 -2.9609 15 6 11.3888 2.2810 -4.9812 16 7 12.6297 2.3658 -5.4118 17 14 9.9688 2.5431 -6.1664 18 1 9.6015 3.9817 -6.1883 19 1 10.3759 2.1153 -7.5289 20 1 8.8003 1.7404 -5.7240 21 6 5.6229 2.4398 0.5187 22 6 6.3919 3.1597 1.6282 23 6 6.5631 2.2260 2.8442 24 6 6.4154 3.1658 4.0675 25 6 5.3033 4.1445 3.6155 26 6 5.5917 4.3793 2.1183 27 6 3.4867 -1.1490 0.0005 28 7 2.1657 -1.1452 0.0010 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8899 0.5139 32 1 1.6563 2.1368 -0.0004 33 1 8.2302 2.0311 0.5432 34 1 8.2194 0.2904 0.1720 35 1 7.6212 0.7958 -2.1807 36 1 7.6320 2.5365 -1.8095 37 1 10.0206 2.3847 -1.1629 38 1 10.0106 0.6439 -1.5339 39 1 9.1069 2.0455 -3.8136 40 1 12.8068 2.5633 -6.3449 41 1 5.5391 3.0943 -0.3489 42 1 4.6263 2.1810 0.8762 43 1 7.3679 3.4769 1.2606 44 1 5.7839 1.4639 2.8526 45 1 7.5501 1.7637 2.8343 46 1 7.3462 3.7000 4.2580 47 1 6.1039 2.6086 4.9510 48 1 5.3715 5.0813 4.1686 49 1 4.3194 3.6947 3.7485 50 1 6.1795 5.2880 1.9894 51 1 4.6553 4.4579 1.5659 52 1 4.0250 -2.0854 0.0009 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001177199712.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:50:10 Heat of formation + Delta-G solvation = 4.684665 kcal Electronic energy + Delta-G solvation = -30859.308211 eV Core-core repulsion = 26858.383235 eV Total energy + Delta-G solvation = -4000.924976 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.57145 -40.88599 -39.20467 -37.59200 -36.52781 -35.74337 -34.13284 -33.86902 -32.19835 -30.78926 -29.62532 -29.42450 -27.42173 -25.85995 -25.59336 -24.83600 -23.76214 -22.74911 -21.56545 -21.13594 -20.37880 -19.66622 -19.16872 -18.47432 -17.40300 -17.08593 -16.83464 -16.70841 -16.49333 -16.16541 -15.92416 -15.88775 -15.61114 -15.51421 -14.87913 -14.63904 -14.56164 -14.20146 -14.01824 -13.88429 -13.74870 -13.52691 -13.49769 -13.16229 -12.97261 -12.86014 -12.58177 -12.42046 -12.17258 -12.06277 -12.04754 -11.93474 -11.89060 -11.86713 -11.83670 -11.73571 -11.48823 -11.45623 -11.14438 -11.01315 -10.35399 -10.00299 -9.70076 -9.35276 -8.06567 -5.40836 -0.75845 -0.09651 1.33943 1.37706 1.45032 1.50739 1.76341 2.44707 2.57044 2.77915 2.99026 3.24332 3.27231 3.47833 3.57293 3.72474 3.75478 3.80152 3.89721 3.95682 4.05957 4.17612 4.30483 4.37404 4.43648 4.49113 4.55633 4.60327 4.64439 4.67111 4.70712 4.77302 4.80721 4.85276 4.89270 4.92110 4.99213 5.06483 5.10708 5.11746 5.20047 5.22996 5.28642 5.32703 5.36735 5.50019 5.50903 5.59451 5.71171 5.97985 6.17458 6.22642 6.54741 6.90893 7.02927 7.78647 7.98114 9.14934 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009027 B = 0.002917 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.227076 B = 9597.857167 C =11440.667080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.107 3.893 3 C 0.054 3.946 4 N -0.405 5.405 5 C 0.001 3.999 6 C 0.567 3.433 7 O -0.565 6.565 8 N -0.582 5.582 9 C 0.121 3.879 10 C -0.125 4.125 11 C 0.159 3.841 12 N -0.761 5.761 13 C -0.239 4.239 14 H 0.058 0.942 15 C -0.064 4.064 16 N -0.982 5.982 17 Si 0.958 3.042 18 H -0.272 1.272 19 H -0.292 1.292 20 H -0.259 1.259 21 C 0.099 3.901 22 C -0.111 4.111 23 C -0.113 4.113 24 C -0.125 4.125 25 C -0.119 4.119 26 C -0.112 4.112 27 C 0.108 3.892 28 N -0.462 5.462 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.116 0.884 32 H 0.221 0.779 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.073 0.927 37 H 0.037 0.963 38 H 0.020 0.980 39 H 0.365 0.635 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.136 0.864 43 H 0.070 0.930 44 H 0.050 0.950 45 H 0.053 0.947 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.073 0.927 49 H 0.068 0.932 50 H 0.068 0.932 51 H 0.077 0.923 52 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.885 3.000 20.821 38.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.036 4.036 3 C -0.110 4.110 4 N -0.122 5.122 5 C -0.136 4.136 6 C 0.354 3.646 7 O -0.444 6.444 8 N -0.311 5.311 9 C -0.002 4.002 10 C -0.163 4.163 11 C 0.032 3.968 12 N -0.406 5.406 13 C -0.370 4.370 14 H 0.076 0.924 15 C -0.255 4.255 16 N -0.632 5.632 17 Si 0.784 3.216 18 H -0.198 1.198 19 H -0.219 1.219 20 H -0.185 1.185 21 C -0.022 4.022 22 C -0.130 4.130 23 C -0.151 4.151 24 C -0.163 4.163 25 C -0.157 4.157 26 C -0.150 4.150 27 C -0.051 4.051 28 N -0.177 5.177 29 H 0.118 0.882 30 H 0.099 0.901 31 H 0.134 0.866 32 H 0.237 0.763 33 H 0.122 0.878 34 H 0.092 0.908 35 H 0.064 0.936 36 H 0.092 0.908 37 H 0.055 0.945 38 H 0.038 0.962 39 H 0.198 0.802 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.152 0.848 43 H 0.089 0.911 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.085 0.915 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.087 0.913 51 H 0.096 0.904 52 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -31.251 2.418 20.798 37.617 hybrid contribution 0.361 -0.241 -1.243 1.316 sum -30.890 2.177 19.556 36.625 Atomic orbital electron populations 1.20954 0.84313 1.05815 1.05043 1.23412 1.00662 0.89147 0.90345 1.24597 0.89663 1.01173 0.95545 1.68583 1.09833 1.26625 1.07168 1.21841 0.94763 0.91965 1.05074 1.18060 0.86026 0.83740 0.76818 1.90791 1.69352 1.32422 1.51868 1.47808 1.08262 1.09252 1.65766 1.21403 0.79942 1.03641 0.95220 1.21905 0.95462 1.01817 0.97164 1.20655 0.93987 0.97765 0.84377 1.42736 1.03515 1.87253 1.07141 1.19063 0.84519 1.39426 0.93961 0.92413 1.25533 0.98845 1.02329 0.98808 1.69883 1.19858 1.57576 1.15933 0.85373 0.79437 0.78595 0.78151 1.19774 1.21895 1.18451 1.22802 0.97935 0.84076 0.97398 1.22189 0.99746 0.96014 0.95066 1.22325 1.00692 0.97375 0.94709 1.22516 0.99373 0.97274 0.97112 1.22333 0.98503 0.99407 0.95441 1.22090 1.00299 0.96486 0.96150 1.23742 0.90484 0.99073 0.91777 1.68548 1.07707 1.30617 1.10878 0.88219 0.90115 0.86568 0.76254 0.87753 0.90803 0.93613 0.90826 0.94472 0.96234 0.80245 0.93184 0.91611 0.84760 0.91135 0.93117 0.92801 0.91475 0.91505 0.90864 0.91365 0.91300 0.90396 0.80758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.36 10.19 71.24 0.73 0.36 16 2 C 0.11 1.26 6.79 42.64 0.29 1.54 16 3 C 0.05 0.55 10.88 84.83 0.92 1.47 16 4 N -0.40 -6.89 6.33 -184.33 -1.17 -8.06 16 5 C 0.00 0.03 6.54 41.88 0.27 0.30 16 6 C 0.57 15.86 7.62 86.88 0.66 16.52 16 7 O -0.57 -19.73 15.92 -3.77 -0.06 -19.79 16 8 N -0.58 -14.22 2.29 -824.91 -1.89 -16.11 16 9 C 0.12 3.25 5.21 86.38 0.45 3.70 16 10 C -0.12 -4.02 5.65 30.59 0.17 -3.85 16 11 C 0.16 6.40 6.26 86.38 0.54 6.94 16 12 N -0.76 -37.96 5.41 -343.45 -1.86 -39.81 16 13 C -0.24 -14.31 10.47 84.03 0.88 -13.43 16 14 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 15 C -0.06 -3.89 5.50 84.86 0.47 -3.42 16 16 N -0.98 -64.62 13.97 21.65 0.30 -64.31 16 17 Si 0.96 47.17 27.74 68.60 1.90 49.08 16 18 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.29 -14.44 7.11 99.48 0.71 -13.73 16 20 H -0.26 -11.87 6.52 99.48 0.65 -11.22 16 21 C 0.10 1.83 4.23 86.38 0.37 2.20 16 22 C -0.11 -1.81 2.43 -10.07 -0.02 -1.83 16 23 C -0.11 -1.94 5.78 31.70 0.18 -1.76 16 24 C -0.13 -1.72 6.91 31.91 0.22 -1.50 16 25 C -0.12 -1.34 6.83 31.67 0.22 -1.12 16 26 C -0.11 -1.38 6.46 31.32 0.20 -1.18 16 27 C 0.11 2.34 10.77 84.93 0.91 3.26 16 28 N -0.46 -8.63 10.41 -182.21 -1.90 -10.52 16 29 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.08 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.12 -0.30 8.08 -2.39 -0.02 -0.31 16 32 H 0.22 0.18 8.06 -2.91 -0.02 0.16 16 33 H 0.10 2.39 5.90 -2.39 -0.01 2.38 16 34 H 0.07 2.23 7.31 -2.39 -0.02 2.22 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.36 17.43 5.53 -92.71 -0.51 16.91 16 40 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 41 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.14 2.28 4.50 -31.14 -0.14 2.14 16 43 H 0.07 1.27 6.65 -2.38 -0.02 1.26 16 44 H 0.05 0.96 7.85 -2.39 -0.02 0.94 16 45 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 48 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 49 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 50 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.08 0.81 7.67 -2.39 -0.02 0.79 16 52 H 0.18 3.85 7.66 -2.91 -0.02 3.83 16 Total: -1.00 -79.16 412.76 3.01 -76.16 By element: Atomic # 1 Polarization: 24.96 SS G_CDS: 0.21 Total: 25.17 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: 7.46 Total: 8.21 kcal Atomic # 7 Polarization: -132.32 SS G_CDS: -6.51 Total: -138.83 kcal Atomic # 8 Polarization: -19.73 SS G_CDS: -0.06 Total: -19.79 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 1.90 Total: 49.08 kcal Total: -79.16 3.01 -76.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001177199712.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.841 kcal (2) G-P(sol) polarization free energy of solvation -79.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds