Wall clock time and date at job start Wed Apr 1 2020 04:20:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32138 * 119.90339 * 2 1 4 4 C 1.32082 * 120.07026 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.05984 * 180.02562 * 4 3 2 6 6 C 1.39436 * 119.87291 * 359.97438 * 4 3 2 7 7 C 1.48150 * 120.09626 * 180.02562 * 6 4 3 8 8 O 1.21524 * 119.99750 * 75.66861 * 7 6 4 9 9 N 1.34775 * 120.00403 * 255.67108 * 7 6 4 10 10 C 1.46929 * 120.62641 * 5.06259 * 9 7 6 11 11 C 1.53193 * 108.77351 * 126.37205 * 10 9 7 12 12 C 1.53038 * 109.31405 * 54.63558 * 11 10 9 13 13 H 1.09002 * 109.45793 * 58.65145 * 12 11 10 14 14 C 1.52999 * 109.46381 * 178.61319 * 12 11 10 15 15 N 1.46499 * 109.47061 * 295.00272 * 14 12 11 16 16 C 1.36939 * 119.99981 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99867 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99937 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00364 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99893 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47106 * 60.00136 * 20 18 16 22 22 H 1.48505 * 109.46859 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47070 * 299.99726 * 20 18 16 24 24 C 1.53042 * 109.53836 * 298.63594 * 12 11 10 25 25 H 1.08995 * 109.49569 * 301.38158 * 24 12 11 26 26 C 1.52998 * 109.49939 * 181.31698 * 24 12 11 27 27 C 1.46917 * 120.63600 * 184.78914 * 9 7 6 28 28 N 1.33001 * 119.80985 * 359.74709 * 6 4 3 29 29 C 1.31803 * 119.92162 * 0.51258 * 28 6 4 30 30 C 1.50707 * 119.93418 * 179.76789 * 29 28 6 31 31 H 1.08992 * 109.47210 * 270.02415 * 1 2 3 32 32 H 1.09004 * 109.46946 * 30.02059 * 1 2 3 33 33 H 1.09005 * 109.47407 * 150.01728 * 1 2 3 34 34 H 1.09000 * 109.47246 * 85.24256 * 5 4 3 35 35 H 1.09001 * 109.47049 * 205.24442 * 5 4 3 36 36 H 1.09000 * 109.47296 * 325.24126 * 5 4 3 37 37 H 1.08994 * 109.58928 * 246.16095 * 10 9 7 38 38 H 1.08999 * 109.58748 * 6.58425 * 10 9 7 39 39 H 1.08997 * 109.49727 * 174.58833 * 11 10 9 40 40 H 1.09002 * 109.49761 * 294.65071 * 11 10 9 41 41 H 1.09010 * 109.46829 * 55.00106 * 14 12 11 42 42 H 1.08992 * 109.47513 * 174.99972 * 14 12 11 43 43 H 0.97003 * 120.00094 * 359.97438 * 15 14 12 44 44 H 0.96995 * 120.00790 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.47387 * 59.99496 * 26 24 12 46 46 H 1.09001 * 109.47350 * 180.02562 * 26 24 12 47 47 H 1.09003 * 109.46565 * 299.99573 * 26 24 12 48 48 H 1.09002 * 109.58701 * 353.41665 * 27 9 7 49 49 H 1.08999 * 109.59225 * 113.83829 * 27 9 7 50 50 H 1.08996 * 109.46840 * 269.71734 * 30 29 28 51 51 H 1.08996 * 109.47091 * 149.71976 * 30 29 28 52 52 H 1.08996 * 109.46722 * 29.71889 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1455 0.0000 4 6 3.4866 1.1493 0.0005 5 6 4.2376 2.4558 0.0011 6 6 4.1846 -0.0578 0.0016 7 6 5.6661 -0.0592 0.0027 8 8 6.2731 0.2012 1.0228 9 7 6.3406 -0.3492 -1.1274 10 6 5.6251 -0.5573 -2.3937 11 6 6.2238 0.3696 -3.4564 12 6 7.7335 0.1335 -3.5414 13 1 7.9243 -0.9104 -3.7901 14 6 8.3299 1.0329 -4.6260 15 7 7.8013 0.6371 -5.9337 16 6 8.1954 1.3051 -7.0622 17 1 8.8957 2.1241 -6.9881 18 6 7.6950 0.9297 -8.3014 19 7 6.8414 -0.0679 -8.3916 20 14 8.2322 1.8415 -9.8407 21 1 9.7041 1.7237 -9.9976 22 1 7.5597 1.2509 -11.0258 23 1 7.8600 3.2743 -9.7227 24 6 8.3797 0.4628 -2.1938 25 1 8.1688 1.4998 -1.9329 26 6 9.8929 0.2580 -2.2893 27 6 7.8058 -0.4575 -1.1180 28 7 3.5166 -1.2078 0.0072 29 6 2.1986 -1.2026 0.0015 30 6 1.4414 -2.5056 0.0025 31 1 -0.3633 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5136 34 1 4.3444 2.8131 1.0253 35 1 5.2247 2.3076 -0.4368 36 1 3.6870 3.1917 -0.5848 37 1 5.7353 -1.5946 -2.7096 38 1 4.5688 -0.3245 -2.2591 39 1 5.7674 0.1573 -4.4232 40 1 6.0322 1.4074 -3.1836 41 1 8.0627 2.0705 -4.4250 42 1 9.4150 0.9307 -4.6266 43 1 7.1721 -0.0982 -6.0002 44 1 6.4919 -0.3305 -9.2575 45 1 10.3007 0.9147 -3.0577 46 1 10.3527 0.4922 -1.3292 47 1 10.1033 -0.7796 -2.5491 48 1 8.1880 -0.1589 -0.1418 49 1 8.0976 -1.4865 -1.3277 50 1 1.2589 -2.8206 -1.0248 51 1 0.4893 -2.3722 0.5162 52 1 2.0283 -3.2664 0.5171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184779247.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:33 Heat of formation + Delta-G solvation = 7.985087 kcal Electronic energy + Delta-G solvation = -31342.983591 eV Core-core repulsion = 27342.201732 eV Total energy + Delta-G solvation = -4000.781859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.82293 -40.11285 -38.08474 -35.32577 -35.06657 -34.68517 -33.51360 -32.02673 -30.64405 -30.35865 -29.38159 -27.31954 -26.93639 -25.89947 -24.07535 -23.55896 -22.65375 -22.26623 -21.34597 -20.19818 -19.36718 -18.49422 -17.54789 -17.04370 -16.52841 -15.67579 -15.54698 -15.15108 -14.81363 -14.64890 -14.36539 -13.95489 -13.85318 -13.82407 -13.56558 -13.48672 -13.41026 -13.20676 -13.04995 -12.93037 -12.65122 -12.55919 -12.51783 -12.46373 -12.20006 -11.95231 -11.85984 -11.84177 -11.64208 -11.12557 -11.00915 -10.91234 -10.81882 -10.50306 -10.42348 -10.23431 -10.18819 -9.97559 -9.64287 -9.35711 -9.11756 -8.87024 -8.69594 -6.91615 -5.77633 -3.05665 0.26473 0.76666 2.22620 2.67813 3.19276 3.43166 3.47691 3.48478 3.58529 3.77953 4.02413 4.17096 4.54808 4.57581 4.59623 4.77174 4.84511 4.90339 4.94915 5.08062 5.11830 5.12752 5.19287 5.23907 5.26697 5.32847 5.37811 5.43101 5.49362 5.52204 5.56439 5.60626 5.66552 5.75747 5.76419 5.83058 5.89169 5.95035 6.02575 6.06558 6.19428 6.25823 6.30106 6.40150 6.47280 6.59052 6.81644 6.90764 6.91616 7.17988 7.41186 7.68832 7.86655 8.41704 9.52759 10.11039 10.45484 11.45273 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.002798 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.803592 B =10004.306563 C =11364.083602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.098 3.902 3 N -0.435 5.435 4 C 0.118 3.882 5 C -0.104 4.104 6 C 0.045 3.955 7 C 0.586 3.414 8 O -0.529 6.529 9 N -0.591 5.591 10 C 0.112 3.888 11 C -0.125 4.125 12 C -0.089 4.089 13 H 0.073 0.927 14 C 0.157 3.843 15 N -0.732 5.732 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.935 5.935 20 Si 0.906 3.094 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.098 4.098 25 H 0.074 0.926 26 C -0.146 4.146 27 C 0.118 3.882 28 N -0.406 5.406 29 C 0.074 3.926 30 C -0.101 4.101 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.017 0.983 42 H 0.025 0.975 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.069 0.931 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.082 0.918 52 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.245 -2.526 19.827 22.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.044 4.044 3 N -0.150 5.150 4 C -0.022 4.022 5 C -0.162 4.162 6 C -0.097 4.097 7 C 0.371 3.629 8 O -0.404 6.404 9 N -0.323 5.323 10 C -0.010 4.010 11 C -0.163 4.163 12 C -0.108 4.108 13 H 0.092 0.908 14 C 0.030 3.970 15 N -0.376 5.376 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.117 4.117 25 H 0.092 0.908 26 C -0.204 4.204 27 C -0.004 4.004 28 N -0.122 5.122 29 C -0.069 4.069 30 C -0.159 4.159 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.094 0.906 38 H 0.088 0.912 39 H 0.109 0.891 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.043 0.957 43 H 0.217 0.783 44 H 0.065 0.935 45 H 0.088 0.912 46 H 0.071 0.929 47 H 0.076 0.924 48 H 0.111 0.889 49 H 0.090 0.910 50 H 0.104 0.896 51 H 0.101 0.899 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -9.794 -2.273 20.257 22.615 hybrid contribution -0.001 0.195 -1.057 1.075 sum -9.795 -2.078 19.200 21.654 Atomic orbital electron populations 1.20796 0.87311 1.04429 1.03669 1.22375 0.98584 0.88769 0.94689 1.68214 1.07568 1.28944 1.10268 1.22183 0.90143 0.96020 0.93904 1.20772 0.99211 0.92042 1.04170 1.21809 0.95702 0.90447 1.01758 1.17613 0.84951 0.76704 0.83651 1.90796 1.68425 1.48914 1.32286 1.48038 1.07754 1.68089 1.08408 1.21823 0.95434 1.00776 0.82987 1.21949 0.96349 0.99167 0.98857 1.21347 0.94070 1.01124 0.94230 0.90823 1.20750 0.95991 0.95095 0.85209 1.42372 1.54017 1.40391 1.00845 1.19179 1.20983 1.11283 0.85502 0.91332 1.24715 0.99868 0.98804 0.97573 1.69635 1.34771 1.30049 1.23885 0.86283 0.77941 0.79063 0.82993 1.21305 1.21708 1.21311 1.21394 0.95804 0.99827 0.94708 0.90760 1.21827 0.94261 1.02515 1.01809 1.21720 0.77706 1.00157 1.00816 1.68255 1.08362 1.27951 1.07606 1.22168 0.89971 0.97009 0.97746 1.20751 0.99179 0.92113 1.03844 0.89657 0.89774 0.89660 0.89236 0.90271 0.89342 0.90616 0.91209 0.89124 0.91723 0.96555 0.95708 0.78337 0.93507 0.91200 0.92898 0.92438 0.88904 0.90978 0.89563 0.89882 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.64 9.37 36.01 0.34 -0.30 16 2 C 0.10 1.01 6.79 -82.28 -0.56 0.45 16 3 N -0.43 -5.35 10.34 -5.24 -0.05 -5.41 16 4 C 0.12 1.52 6.82 -82.04 -0.56 0.96 16 5 C -0.10 -1.14 9.89 36.01 0.36 -0.79 16 6 C 0.05 0.63 4.48 -82.84 -0.37 0.26 16 7 C 0.59 8.67 5.73 -12.19 -0.07 8.60 16 8 O -0.53 -9.01 16.52 5.35 0.09 -8.92 16 9 N -0.59 -7.96 2.98 -174.03 -0.52 -8.48 16 10 C 0.11 1.48 6.32 -3.71 -0.02 1.46 16 11 C -0.13 -1.86 5.25 -26.61 -0.14 -2.00 16 12 C -0.09 -1.36 1.73 -90.58 -0.16 -1.51 16 13 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 14 C 0.16 3.03 5.41 -4.04 -0.02 3.01 16 15 N -0.73 -17.96 5.32 -59.91 -0.32 -18.28 16 16 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 17 H 0.07 1.85 7.83 -52.48 -0.41 1.44 16 18 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 19 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 20 Si 0.91 22.26 29.55 -169.99 -5.02 17.24 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 24 C -0.10 -1.25 2.40 -90.72 -0.22 -1.47 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 C -0.15 -1.72 8.82 37.16 0.33 -1.39 16 27 C 0.12 1.47 5.70 -3.94 -0.02 1.45 16 28 N -0.41 -5.40 10.35 -5.88 -0.06 -5.46 16 29 C 0.07 0.78 6.79 -82.42 -0.56 0.22 16 30 C -0.10 -0.67 9.37 36.01 0.34 -0.33 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.34 6.70 -51.93 -0.35 0.00 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.91 6.90 -51.93 -0.36 0.55 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.07 0.93 6.36 -51.93 -0.33 0.60 16 39 H 0.09 1.55 7.15 -51.93 -0.37 1.17 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.33 8.14 -51.92 -0.42 -0.09 16 42 H 0.03 0.49 6.14 -51.93 -0.32 0.17 16 43 H 0.38 9.80 6.85 -40.82 -0.28 9.52 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.07 0.89 6.29 -51.93 -0.33 0.56 16 46 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 1.19 7.00 -51.93 -0.36 0.82 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.08 0.34 6.70 -51.93 -0.35 -0.01 16 52 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 410.01 15.07 6.18 6.18 Total: -1.00 -33.45 410.01 -9.08 -42.54 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -8.51 Total: 6.29 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: -1.59 Total: 1.41 kcal Atomic # 7 Polarization: -64.50 SS G_CDS: -0.23 Total: -64.73 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: 0.09 Total: -8.92 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.45 -9.08 -42.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184779247.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.521 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds