Wall clock time and date at job start Wed Apr 1 2020 04:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.32138 * 119.90339 * 2 1 4 4 C 1.32082 * 120.07026 * 179.97438 * 3 2 1 5 5 C 1.50700 * 120.05984 * 180.02562 * 4 3 2 6 6 C 1.39436 * 119.87291 * 359.97438 * 4 3 2 7 7 C 1.48150 * 120.09626 * 180.02562 * 6 4 3 8 8 O 1.21524 * 119.99750 * 75.66861 * 7 6 4 9 9 N 1.34775 * 120.00403 * 255.67108 * 7 6 4 10 10 C 1.46929 * 120.62641 * 5.06259 * 9 7 6 11 11 C 1.53193 * 108.77351 * 126.37205 * 10 9 7 12 12 C 1.53038 * 109.31405 * 54.63558 * 11 10 9 13 13 H 1.09002 * 109.45793 * 58.65145 * 12 11 10 14 14 C 1.52999 * 109.46381 * 178.61319 * 12 11 10 15 15 N 1.46499 * 109.47061 * 295.00272 * 14 12 11 16 16 C 1.36939 * 119.99981 * 179.97438 * 15 14 12 17 17 H 1.08004 * 119.99867 * 359.97438 * 16 15 14 18 18 C 1.38807 * 119.99937 * 179.97438 * 16 15 14 19 19 N 1.31616 * 120.00364 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99893 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47106 * 60.00136 * 20 18 16 22 22 H 1.48505 * 109.46859 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47070 * 299.99726 * 20 18 16 24 24 C 1.53042 * 109.53836 * 298.63594 * 12 11 10 25 25 H 1.08995 * 109.49569 * 301.38158 * 24 12 11 26 26 C 1.52998 * 109.49939 * 181.31698 * 24 12 11 27 27 C 1.46917 * 120.63600 * 184.78914 * 9 7 6 28 28 N 1.33001 * 119.80985 * 359.74709 * 6 4 3 29 29 C 1.31803 * 119.92162 * 0.51258 * 28 6 4 30 30 C 1.50707 * 119.93418 * 179.76789 * 29 28 6 31 31 H 1.08992 * 109.47210 * 270.02415 * 1 2 3 32 32 H 1.09004 * 109.46946 * 30.02059 * 1 2 3 33 33 H 1.09005 * 109.47407 * 150.01728 * 1 2 3 34 34 H 1.09000 * 109.47246 * 85.24256 * 5 4 3 35 35 H 1.09001 * 109.47049 * 205.24442 * 5 4 3 36 36 H 1.09000 * 109.47296 * 325.24126 * 5 4 3 37 37 H 1.08994 * 109.58928 * 246.16095 * 10 9 7 38 38 H 1.08999 * 109.58748 * 6.58425 * 10 9 7 39 39 H 1.08997 * 109.49727 * 174.58833 * 11 10 9 40 40 H 1.09002 * 109.49761 * 294.65071 * 11 10 9 41 41 H 1.09010 * 109.46829 * 55.00106 * 14 12 11 42 42 H 1.08992 * 109.47513 * 174.99972 * 14 12 11 43 43 H 0.97003 * 120.00094 * 359.97438 * 15 14 12 44 44 H 0.96995 * 120.00790 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.47387 * 59.99496 * 26 24 12 46 46 H 1.09001 * 109.47350 * 180.02562 * 26 24 12 47 47 H 1.09003 * 109.46565 * 299.99573 * 26 24 12 48 48 H 1.09002 * 109.58701 * 353.41665 * 27 9 7 49 49 H 1.08999 * 109.59225 * 113.83829 * 27 9 7 50 50 H 1.08996 * 109.46840 * 269.71734 * 30 29 28 51 51 H 1.08996 * 109.47091 * 149.71976 * 30 29 28 52 52 H 1.08996 * 109.46722 * 29.71889 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1658 1.1455 0.0000 4 6 3.4866 1.1493 0.0005 5 6 4.2376 2.4558 0.0011 6 6 4.1846 -0.0578 0.0016 7 6 5.6661 -0.0592 0.0027 8 8 6.2731 0.2012 1.0228 9 7 6.3406 -0.3492 -1.1274 10 6 5.6251 -0.5573 -2.3937 11 6 6.2238 0.3696 -3.4564 12 6 7.7335 0.1335 -3.5414 13 1 7.9243 -0.9104 -3.7901 14 6 8.3299 1.0329 -4.6260 15 7 7.8013 0.6371 -5.9337 16 6 8.1954 1.3051 -7.0622 17 1 8.8957 2.1241 -6.9881 18 6 7.6950 0.9297 -8.3014 19 7 6.8414 -0.0679 -8.3916 20 14 8.2322 1.8415 -9.8407 21 1 9.7041 1.7237 -9.9976 22 1 7.5597 1.2509 -11.0258 23 1 7.8600 3.2743 -9.7227 24 6 8.3797 0.4628 -2.1938 25 1 8.1688 1.4998 -1.9329 26 6 9.8929 0.2580 -2.2893 27 6 7.8058 -0.4575 -1.1180 28 7 3.5166 -1.2078 0.0072 29 6 2.1986 -1.2026 0.0015 30 6 1.4414 -2.5056 0.0025 31 1 -0.3633 0.0004 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3634 -0.8902 -0.5136 34 1 4.3444 2.8131 1.0253 35 1 5.2247 2.3076 -0.4368 36 1 3.6870 3.1917 -0.5848 37 1 5.7353 -1.5946 -2.7096 38 1 4.5688 -0.3245 -2.2591 39 1 5.7674 0.1573 -4.4232 40 1 6.0322 1.4074 -3.1836 41 1 8.0627 2.0705 -4.4250 42 1 9.4150 0.9307 -4.6266 43 1 7.1721 -0.0982 -6.0002 44 1 6.4919 -0.3305 -9.2575 45 1 10.3007 0.9147 -3.0577 46 1 10.3527 0.4922 -1.3292 47 1 10.1033 -0.7796 -2.5491 48 1 8.1880 -0.1589 -0.1418 49 1 8.0976 -1.4865 -1.3277 50 1 1.2589 -2.8206 -1.0248 51 1 0.4893 -2.3722 0.5162 52 1 2.0283 -3.2664 0.5171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184779247.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:32 Heat of formation + Delta-G solvation = -13.657446 kcal Electronic energy + Delta-G solvation = -31343.922082 eV Core-core repulsion = 27342.201732 eV Total energy + Delta-G solvation = -4001.720349 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.72619 -41.20730 -39.31752 -36.63781 -36.14227 -35.63389 -34.88076 -33.48860 -32.08344 -31.39570 -30.10482 -28.48430 -28.16722 -26.86469 -25.58241 -24.61827 -23.92802 -23.21882 -22.69071 -21.35038 -20.50798 -19.38735 -19.16729 -18.49350 -17.64231 -16.77606 -16.54308 -16.35477 -16.15094 -15.76942 -15.61178 -15.50863 -15.24144 -14.72106 -14.56803 -14.56116 -14.32505 -14.09162 -14.00623 -13.93908 -13.88726 -13.64017 -13.38799 -13.26655 -13.15893 -12.96383 -12.93479 -12.85065 -12.81039 -12.68999 -12.60395 -12.23698 -12.02745 -11.96699 -11.88623 -11.68311 -11.65971 -11.36045 -11.22077 -10.88170 -10.25739 -9.95214 -9.83695 -8.95683 -7.93711 -5.21369 -0.60808 -0.11185 1.13050 1.47672 1.49992 1.56054 1.62668 2.33222 2.56848 2.74824 2.89715 3.20795 3.31180 3.39617 3.61574 3.66523 3.75922 3.76802 3.87181 3.93398 4.07454 4.15388 4.24335 4.28749 4.43177 4.47811 4.50063 4.58256 4.63607 4.68380 4.68800 4.72742 4.74139 4.75045 4.76101 4.80328 4.87568 4.95048 5.02211 5.07058 5.08278 5.08737 5.17159 5.22603 5.31201 5.40025 5.43580 5.50475 5.56748 6.01926 6.09660 6.28935 6.54733 6.75065 7.35651 8.12275 8.35838 9.29468 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.011390 B = 0.002798 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.803592 B =10004.306563 C =11364.083602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.099 3.901 3 N -0.452 5.452 4 C 0.104 3.896 5 C -0.101 4.101 6 C 0.019 3.981 7 C 0.589 3.411 8 O -0.557 6.557 9 N -0.589 5.589 10 C 0.125 3.875 11 C -0.117 4.117 12 C -0.078 4.078 13 H 0.070 0.930 14 C 0.158 3.842 15 N -0.742 5.742 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.073 4.073 19 N -0.967 5.967 20 Si 0.970 3.030 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.280 1.280 24 C -0.087 4.087 25 H 0.071 0.929 26 C -0.143 4.143 27 C 0.119 3.881 28 N -0.428 5.428 29 C 0.070 3.930 30 C -0.099 4.099 31 H 0.105 0.895 32 H 0.083 0.917 33 H 0.112 0.888 34 H 0.095 0.905 35 H 0.069 0.931 36 H 0.097 0.903 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.012 0.988 42 H 0.030 0.970 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.058 0.942 46 H 0.072 0.928 47 H 0.061 0.939 48 H 0.094 0.906 49 H 0.085 0.915 50 H 0.099 0.901 51 H 0.114 0.886 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.171 -2.805 20.526 23.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.044 4.044 3 N -0.167 5.167 4 C -0.035 4.035 5 C -0.158 4.158 6 C -0.121 4.121 7 C 0.374 3.626 8 O -0.435 6.435 9 N -0.319 5.319 10 C 0.002 3.998 11 C -0.155 4.155 12 C -0.097 4.097 13 H 0.089 0.911 14 C 0.031 3.969 15 N -0.385 5.385 16 C -0.377 4.377 17 H 0.090 0.910 18 C -0.265 4.265 19 N -0.618 5.618 20 Si 0.799 3.201 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.206 1.206 24 C -0.106 4.106 25 H 0.089 0.911 26 C -0.201 4.201 27 C -0.002 4.002 28 N -0.145 5.145 29 C -0.074 4.074 30 C -0.157 4.157 31 H 0.123 0.877 32 H 0.101 0.899 33 H 0.130 0.870 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.116 0.884 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.048 0.952 43 H 0.207 0.793 44 H 0.060 0.940 45 H 0.077 0.923 46 H 0.091 0.909 47 H 0.080 0.920 48 H 0.112 0.888 49 H 0.103 0.897 50 H 0.117 0.883 51 H 0.132 0.868 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -10.672 -2.522 20.975 23.668 hybrid contribution 0.201 0.264 -1.215 1.260 sum -10.471 -2.258 19.760 22.476 Atomic orbital electron populations 1.20987 0.84118 1.05731 1.05209 1.23134 1.00575 0.88123 0.92536 1.68292 1.07236 1.30087 1.11104 1.22364 0.90701 0.96214 0.94211 1.20762 0.98665 0.91781 1.04617 1.21676 0.95183 0.91225 1.04037 1.17792 0.85519 0.75940 0.83345 1.90763 1.69231 1.50334 1.33216 1.48074 1.08171 1.67557 1.08145 1.21662 0.95283 1.00523 0.82287 1.21807 0.96090 0.99403 0.98202 1.21222 0.94194 0.99921 0.94324 0.91127 1.20881 0.96208 0.95557 0.84217 1.42558 1.53958 1.39958 1.02067 1.19569 1.20336 1.11104 0.86646 0.90973 1.25494 1.00522 1.00000 1.00500 1.69786 1.36230 1.31685 1.24110 0.85271 0.77679 0.77991 0.79179 1.20497 1.22131 1.20582 1.21289 0.96551 0.99751 0.93058 0.91065 1.21797 0.93118 1.02571 1.02591 1.21775 0.77133 1.00746 1.00575 1.68246 1.09857 1.27882 1.08488 1.22884 0.89310 0.98893 0.96349 1.20922 0.99891 0.89839 1.05022 0.87717 0.89861 0.86981 0.88649 0.91210 0.88392 0.89949 0.91185 0.91484 0.92064 0.96980 0.95213 0.79286 0.94037 0.92254 0.90927 0.91977 0.88797 0.89675 0.88263 0.86759 0.90352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 9.37 71.24 0.67 -0.28 16 2 C 0.10 1.88 6.79 42.63 0.29 2.17 16 3 N -0.45 -10.83 10.34 -170.48 -1.76 -12.60 16 4 C 0.10 2.71 6.82 42.81 0.29 3.00 16 5 C -0.10 -2.25 9.89 71.24 0.70 -1.54 16 6 C 0.02 0.55 4.48 41.89 0.19 0.73 16 7 C 0.59 17.58 5.73 86.88 0.50 18.08 16 8 O -0.56 -19.27 16.52 -3.79 -0.06 -19.33 16 9 N -0.59 -15.75 2.98 -822.81 -2.45 -18.21 16 10 C 0.13 3.31 6.32 86.36 0.55 3.85 16 11 C -0.12 -3.53 5.25 30.67 0.16 -3.36 16 12 C -0.08 -2.36 1.73 -10.77 -0.02 -2.38 16 13 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 14 C 0.16 6.09 5.41 86.38 0.47 6.55 16 15 N -0.74 -36.88 5.32 -343.45 -1.83 -38.71 16 16 C -0.24 -13.56 9.99 84.03 0.84 -12.72 16 17 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 18 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 19 N -0.97 -58.36 13.06 21.65 0.28 -58.08 16 20 Si 0.97 45.84 29.55 68.60 2.03 47.87 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 23 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 24 C -0.09 -2.15 2.40 -10.86 -0.03 -2.17 16 25 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 26 C -0.14 -3.14 8.82 71.98 0.63 -2.51 16 27 C 0.12 2.86 5.70 86.22 0.49 3.36 16 28 N -0.43 -11.25 10.35 -172.53 -1.79 -13.03 16 29 C 0.07 1.38 6.79 42.68 0.29 1.67 16 30 C -0.10 -1.05 9.37 71.24 0.67 -0.38 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.61 16 32 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.11 0.44 6.70 -2.38 -0.02 0.43 16 34 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.07 1.65 6.90 -2.39 -0.02 1.64 16 36 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.07 1.88 6.36 -2.39 -0.02 1.87 16 39 H 0.07 2.37 7.15 -2.39 -0.02 2.35 16 40 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 42 H 0.03 1.15 6.14 -2.39 -0.01 1.13 16 43 H 0.37 19.63 6.85 -92.71 -0.63 18.99 16 44 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 45 H 0.06 1.44 6.29 -2.39 -0.02 1.42 16 46 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 47 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 48 H 0.09 2.31 7.00 -2.39 -0.02 2.30 16 49 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 51 H 0.11 0.48 6.70 -2.39 -0.02 0.46 16 52 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -72.80 410.01 1.87 -70.93 By element: Atomic # 1 Polarization: 30.48 SS G_CDS: 0.29 Total: 30.77 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 7.16 Total: 10.38 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -7.54 Total: -140.62 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.06 Total: -19.33 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.80 1.87 -70.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184779247.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.269 kcal (2) G-P(sol) polarization free energy of solvation -72.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds