Wall clock time and date at job start Wed Apr 1 2020 04:20:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32133 * 119.90243 * 2 1 4 4 C 1.32080 * 120.07302 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.06810 * 179.97438 * 4 3 2 6 6 C 1.39446 * 119.87211 * 359.97438 * 4 3 2 7 7 C 1.48148 * 120.09900 * 179.97438 * 6 4 3 8 8 O 1.21516 * 120.00297 * 75.58973 * 7 6 4 9 9 N 1.34781 * 119.99670 * 255.59102 * 7 6 4 10 10 C 1.46925 * 120.63284 * 5.07796 * 9 7 6 11 11 C 1.53193 * 108.77337 * 126.37053 * 10 9 7 12 12 C 1.53039 * 109.31301 * 54.63370 * 11 10 9 13 13 H 1.09004 * 109.45680 * 58.65803 * 12 11 10 14 14 C 1.53004 * 109.45979 * 178.60999 * 12 11 10 15 15 N 1.46497 * 109.47523 * 295.00341 * 14 12 11 16 16 C 1.36931 * 120.00193 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99924 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00259 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99785 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46960 * 89.99813 * 20 18 16 22 22 H 1.48498 * 109.47340 * 209.99708 * 20 18 16 23 23 H 1.48495 * 109.47117 * 330.00063 * 20 18 16 24 24 C 1.53036 * 109.54166 * 298.63863 * 12 11 10 25 25 H 1.08995 * 109.49597 * 181.34957 * 24 12 11 26 26 C 1.52997 * 109.49292 * 301.41164 * 24 12 11 27 27 C 1.46928 * 120.62638 * 184.80152 * 9 7 6 28 28 N 1.33007 * 119.80337 * 0.02562 * 6 4 3 29 29 C 1.31800 * 119.92908 * 359.71532 * 28 6 4 30 30 C 1.50694 * 119.93987 * 180.29471 * 29 28 6 31 31 H 1.09004 * 109.46946 * 90.00127 * 1 2 3 32 32 H 1.09000 * 109.46944 * 330.00478 * 1 2 3 33 33 H 1.08995 * 109.47779 * 210.00169 * 1 2 3 34 34 H 1.09001 * 109.46620 * 85.22200 * 5 4 3 35 35 H 1.09002 * 109.47111 * 205.22075 * 5 4 3 36 36 H 1.08993 * 109.46933 * 325.22546 * 5 4 3 37 37 H 1.09000 * 109.58911 * 246.15916 * 10 9 7 38 38 H 1.08997 * 109.58366 * 6.44409 * 10 9 7 39 39 H 1.09003 * 109.49691 * 174.58692 * 11 10 9 40 40 H 1.08996 * 109.49917 * 294.65031 * 11 10 9 41 41 H 1.08998 * 109.46783 * 55.00578 * 14 12 11 42 42 H 1.09004 * 109.46663 * 175.00047 * 14 12 11 43 43 H 0.97004 * 119.99922 * 0.02562 * 15 14 12 44 44 H 0.96996 * 119.99928 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.47653 * 60.00236 * 26 24 12 46 46 H 1.09007 * 109.47513 * 180.02562 * 26 24 12 47 47 H 1.09004 * 109.47662 * 299.99885 * 26 24 12 48 48 H 1.08997 * 109.58814 * 353.42197 * 27 9 7 49 49 H 1.09005 * 109.58787 * 113.84425 * 27 9 7 50 50 H 1.09011 * 109.46782 * 270.26467 * 30 29 28 51 51 H 1.08995 * 109.47468 * 30.26299 * 30 29 28 52 52 H 1.09001 * 109.47456 * 150.26962 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2377 2.4558 -0.0011 6 6 4.1846 -0.0578 -0.0005 7 6 5.6661 -0.0592 -0.0017 8 8 6.2748 0.2025 1.0170 9 7 6.3388 -0.3509 -1.1326 10 6 5.6213 -0.5603 -2.3975 11 6 6.2186 0.3651 -3.4623 12 6 7.7281 0.1286 -3.5492 13 1 7.9183 -0.9157 -3.7970 14 6 8.3230 1.0265 -4.6359 15 7 7.7924 0.6291 -5.9423 16 6 8.1849 1.2956 -7.0722 17 1 8.8853 2.1145 -7.0003 18 6 7.6817 0.9194 -8.3100 19 7 6.8277 -0.0783 -8.3977 20 14 8.2167 1.8291 -9.8514 21 1 9.4221 1.1738 -10.4197 22 1 7.1188 1.7980 -10.8508 23 1 8.5346 3.2387 -9.5090 24 6 8.3764 0.4594 -2.2030 25 1 9.4544 0.3137 -2.2728 26 6 8.0805 1.9153 -1.8378 27 6 7.8040 -0.4594 -1.1251 28 7 3.5165 -1.2078 -0.0005 29 6 2.1985 -1.2027 0.0052 30 6 1.4413 -2.5055 0.0119 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3634 -0.8899 0.5138 34 1 4.3449 2.8136 1.0229 35 1 5.2246 2.3073 -0.4393 36 1 3.6868 3.1913 -0.5871 37 1 5.7309 -1.5981 -2.7123 38 1 4.5648 -0.3295 -2.2609 39 1 5.7607 0.1516 -4.4281 40 1 6.0276 1.4032 -3.1906 41 1 8.0564 2.0642 -4.4358 42 1 9.4082 0.9240 -4.6380 43 1 7.1624 -0.1057 -6.0068 44 1 6.4764 -0.3414 -9.2627 45 1 7.0025 2.0604 -1.7671 46 1 8.5428 2.1508 -0.8791 47 1 8.4858 2.5726 -2.6073 48 1 8.1877 -0.1597 -0.1499 49 1 8.0953 -1.4888 -1.3341 50 1 1.2584 -2.8248 -1.0143 51 1 2.0283 -3.2643 0.5292 52 1 0.4894 -2.3700 0.5253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184779256.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:39 Heat of formation + Delta-G solvation = 12.238039 kcal Electronic energy + Delta-G solvation = -31631.342032 eV Core-core repulsion = 27630.744595 eV Total energy + Delta-G solvation = -4000.597437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83233 -40.22656 -38.13118 -35.32535 -35.02557 -34.69118 -33.33461 -31.82099 -30.65907 -30.36550 -29.35609 -27.24748 -27.07064 -25.99778 -24.02919 -23.54676 -23.03987 -22.46169 -21.41001 -20.25802 -18.56074 -18.44997 -17.64703 -16.96667 -16.42794 -15.74879 -15.54837 -15.29789 -14.95467 -14.48984 -14.36827 -14.02388 -13.93434 -13.77875 -13.67044 -13.56461 -13.40855 -13.32164 -13.01044 -12.93630 -12.72225 -12.54666 -12.48887 -12.41053 -12.21554 -12.08470 -11.83885 -11.61870 -11.40495 -11.11599 -11.05592 -10.95124 -10.78817 -10.49312 -10.37244 -10.23373 -10.10110 -9.97649 -9.65220 -9.35445 -9.11933 -8.87212 -8.68251 -6.92004 -5.78004 -3.05949 0.27090 0.76746 2.24143 2.69576 3.19955 3.42440 3.47865 3.49215 3.58780 3.77550 4.02812 4.17580 4.55739 4.57630 4.58927 4.76884 4.82541 4.91387 4.97610 5.00454 5.10684 5.12526 5.20730 5.23715 5.30031 5.32507 5.39305 5.46344 5.49942 5.51881 5.58301 5.61516 5.66856 5.74251 5.78314 5.83851 5.84077 6.02629 6.03511 6.08268 6.16531 6.26861 6.35259 6.42933 6.43571 6.62645 6.79195 6.91362 6.92064 7.19458 7.41514 7.69218 7.88358 8.41371 9.52538 10.10840 10.45226 11.44973 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.002807 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.263512 B = 9971.438306 C =11105.658383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.097 3.903 3 N -0.435 5.435 4 C 0.118 3.882 5 C -0.105 4.105 6 C 0.045 3.955 7 C 0.586 3.414 8 O -0.528 6.528 9 N -0.588 5.588 10 C 0.113 3.887 11 C -0.127 4.127 12 C -0.088 4.088 13 H 0.073 0.927 14 C 0.159 3.841 15 N -0.732 5.732 16 C -0.237 4.237 17 H 0.069 0.931 18 C -0.014 4.014 19 N -0.934 5.934 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.099 4.099 25 H 0.085 0.915 26 C -0.146 4.146 27 C 0.117 3.883 28 N -0.405 5.405 29 C 0.073 3.927 30 C -0.102 4.102 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.075 0.925 38 H 0.069 0.931 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.022 0.978 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.255 0.745 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.081 0.919 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.711 -2.036 20.029 22.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.045 4.045 3 N -0.150 5.150 4 C -0.023 4.023 5 C -0.163 4.163 6 C -0.097 4.097 7 C 0.371 3.629 8 O -0.404 6.404 9 N -0.320 5.320 10 C -0.010 4.010 11 C -0.165 4.165 12 C -0.107 4.107 13 H 0.091 0.909 14 C 0.031 3.969 15 N -0.377 5.377 16 C -0.369 4.369 17 H 0.087 0.913 18 C -0.210 4.210 19 N -0.583 5.583 20 Si 0.737 3.263 21 H -0.218 1.218 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.118 4.118 25 H 0.103 0.897 26 C -0.203 4.203 27 C -0.005 4.005 28 N -0.122 5.122 29 C -0.069 4.069 30 C -0.160 4.160 31 H 0.106 0.894 32 H 0.101 0.899 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.107 0.893 40 H 0.087 0.913 41 H 0.039 0.961 42 H 0.036 0.964 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.082 0.918 48 H 0.112 0.888 49 H 0.090 0.910 50 H 0.105 0.895 51 H 0.100 0.900 52 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.255 -1.769 20.454 22.949 hybrid contribution 0.032 0.144 -1.096 1.105 sum -10.223 -1.625 19.359 21.952 Atomic orbital electron populations 1.20830 0.87342 1.04193 1.03944 1.22355 0.98583 0.88783 0.94739 1.68209 1.07579 1.28929 1.10268 1.22182 0.90141 0.96019 0.93922 1.20793 0.99233 0.92059 1.04186 1.21834 0.95758 0.90425 1.01697 1.17592 0.84902 0.76756 0.83664 1.90793 1.68284 1.48896 1.32397 1.47995 1.07686 1.67964 1.08370 1.21810 0.95366 1.00756 0.83073 1.21982 0.96304 0.99437 0.98749 1.21312 0.94343 1.00925 0.94155 0.90890 1.20708 0.95573 0.95392 0.85186 1.42384 1.53901 1.40484 1.00886 1.19223 1.20849 1.11299 0.85489 0.91280 1.24720 0.99860 0.98843 0.97587 1.69650 1.34737 1.30104 1.23828 0.86206 0.77557 0.79133 0.83406 1.21756 1.21801 1.20800 1.21411 1.00393 0.95621 0.94421 0.89651 1.21896 1.01659 0.95746 1.01038 1.21700 0.78006 0.99900 1.00871 1.68259 1.08342 1.27965 1.07596 1.22147 0.89986 0.97008 0.97787 1.20783 0.99197 0.92111 1.03885 0.89405 0.89941 0.89650 0.89239 0.90229 0.89359 0.90671 0.91270 0.89283 0.91328 0.96054 0.96403 0.78330 0.93566 0.92790 0.93083 0.91782 0.88839 0.91014 0.89545 0.90024 0.89764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 9.79 36.00 0.35 -0.29 16 2 C 0.10 1.00 6.79 -82.28 -0.56 0.44 16 3 N -0.43 -5.34 10.34 -5.24 -0.05 -5.39 16 4 C 0.12 1.51 6.82 -82.04 -0.56 0.95 16 5 C -0.11 -1.14 9.89 36.01 0.36 -0.79 16 6 C 0.05 0.63 4.48 -82.84 -0.37 0.26 16 7 C 0.59 8.54 5.73 -12.19 -0.07 8.47 16 8 O -0.53 -8.88 16.52 5.35 0.09 -8.79 16 9 N -0.59 -7.76 2.42 -174.03 -0.42 -8.18 16 10 C 0.11 1.47 6.32 -3.71 -0.02 1.45 16 11 C -0.13 -1.86 4.90 -26.61 -0.13 -1.99 16 12 C -0.09 -1.34 1.96 -90.58 -0.18 -1.51 16 13 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 14 C 0.16 3.05 5.18 -4.04 -0.02 3.03 16 15 N -0.73 -17.96 5.32 -59.91 -0.32 -18.28 16 16 C -0.24 -6.55 9.99 -15.06 -0.15 -6.71 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -27.82 13.06 55.49 0.72 -27.10 16 20 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.10 -1.24 2.72 -90.73 -0.25 -1.49 16 25 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 26 C -0.15 -1.83 8.37 37.16 0.31 -1.51 16 27 C 0.12 1.43 5.79 -3.93 -0.02 1.41 16 28 N -0.41 -5.38 10.34 -5.88 -0.06 -5.44 16 29 C 0.07 0.78 6.79 -82.43 -0.56 0.22 16 30 C -0.10 -0.68 9.78 36.00 0.35 -0.32 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.08 0.32 5.93 -51.93 -0.31 0.01 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.08 0.90 6.27 -51.93 -0.33 0.58 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.91 6.35 -51.93 -0.33 0.58 16 39 H 0.09 1.52 7.15 -51.93 -0.37 1.14 16 40 H 0.07 1.02 6.34 -51.93 -0.33 0.69 16 41 H 0.02 0.42 6.74 -51.93 -0.35 0.07 16 42 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.38 9.80 6.85 -40.82 -0.28 9.52 16 44 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 45 H 0.05 0.70 5.34 -51.93 -0.28 0.42 16 46 H 0.05 0.59 8.14 -51.92 -0.42 0.17 16 47 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 48 H 0.09 1.17 6.99 -51.93 -0.36 0.81 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.09 0.50 8.14 -51.92 -0.42 0.07 16 51 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.08 0.34 5.94 -51.93 -0.31 0.03 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -33.45 404.02 -8.80 -42.24 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -8.20 Total: 6.49 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -1.62 Total: 1.10 kcal Atomic # 7 Polarization: -64.25 SS G_CDS: -0.13 Total: -64.38 kcal Atomic # 8 Polarization: -8.88 SS G_CDS: 0.09 Total: -8.79 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.45 -8.80 -42.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184779256.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.483 kcal (2) G-P(sol) polarization free energy of solvation -33.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds