Wall clock time and date at job start Wed Apr 1 2020 04:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32133 * 119.90243 * 2 1 4 4 C 1.32080 * 120.07302 * 180.02562 * 3 2 1 5 5 C 1.50701 * 120.06810 * 179.97438 * 4 3 2 6 6 C 1.39446 * 119.87211 * 359.97438 * 4 3 2 7 7 C 1.48148 * 120.09900 * 179.97438 * 6 4 3 8 8 O 1.21516 * 120.00297 * 75.58973 * 7 6 4 9 9 N 1.34781 * 119.99670 * 255.59102 * 7 6 4 10 10 C 1.46925 * 120.63284 * 5.07796 * 9 7 6 11 11 C 1.53193 * 108.77337 * 126.37053 * 10 9 7 12 12 C 1.53039 * 109.31301 * 54.63370 * 11 10 9 13 13 H 1.09004 * 109.45680 * 58.65803 * 12 11 10 14 14 C 1.53004 * 109.45979 * 178.60999 * 12 11 10 15 15 N 1.46497 * 109.47523 * 295.00341 * 14 12 11 16 16 C 1.36931 * 120.00193 * 179.97438 * 15 14 12 17 17 H 1.07996 * 119.99882 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99924 * 180.02562 * 16 15 14 19 19 N 1.31621 * 120.00259 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99785 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46960 * 89.99813 * 20 18 16 22 22 H 1.48498 * 109.47340 * 209.99708 * 20 18 16 23 23 H 1.48495 * 109.47117 * 330.00063 * 20 18 16 24 24 C 1.53036 * 109.54166 * 298.63863 * 12 11 10 25 25 H 1.08995 * 109.49597 * 181.34957 * 24 12 11 26 26 C 1.52997 * 109.49292 * 301.41164 * 24 12 11 27 27 C 1.46928 * 120.62638 * 184.80152 * 9 7 6 28 28 N 1.33007 * 119.80337 * 0.02562 * 6 4 3 29 29 C 1.31800 * 119.92908 * 359.71532 * 28 6 4 30 30 C 1.50694 * 119.93987 * 180.29471 * 29 28 6 31 31 H 1.09004 * 109.46946 * 90.00127 * 1 2 3 32 32 H 1.09000 * 109.46944 * 330.00478 * 1 2 3 33 33 H 1.08995 * 109.47779 * 210.00169 * 1 2 3 34 34 H 1.09001 * 109.46620 * 85.22200 * 5 4 3 35 35 H 1.09002 * 109.47111 * 205.22075 * 5 4 3 36 36 H 1.08993 * 109.46933 * 325.22546 * 5 4 3 37 37 H 1.09000 * 109.58911 * 246.15916 * 10 9 7 38 38 H 1.08997 * 109.58366 * 6.44409 * 10 9 7 39 39 H 1.09003 * 109.49691 * 174.58692 * 11 10 9 40 40 H 1.08996 * 109.49917 * 294.65031 * 11 10 9 41 41 H 1.08998 * 109.46783 * 55.00578 * 14 12 11 42 42 H 1.09004 * 109.46663 * 175.00047 * 14 12 11 43 43 H 0.97004 * 119.99922 * 0.02562 * 15 14 12 44 44 H 0.96996 * 119.99928 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.47653 * 60.00236 * 26 24 12 46 46 H 1.09007 * 109.47513 * 180.02562 * 26 24 12 47 47 H 1.09004 * 109.47662 * 299.99885 * 26 24 12 48 48 H 1.08997 * 109.58814 * 353.42197 * 27 9 7 49 49 H 1.09005 * 109.58787 * 113.84425 * 27 9 7 50 50 H 1.09011 * 109.46782 * 270.26467 * 30 29 28 51 51 H 1.08995 * 109.47468 * 30.26299 * 30 29 28 52 52 H 1.09001 * 109.47456 * 150.26962 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2377 2.4558 -0.0011 6 6 4.1846 -0.0578 -0.0005 7 6 5.6661 -0.0592 -0.0017 8 8 6.2748 0.2025 1.0170 9 7 6.3388 -0.3509 -1.1326 10 6 5.6213 -0.5603 -2.3975 11 6 6.2186 0.3651 -3.4623 12 6 7.7281 0.1286 -3.5492 13 1 7.9183 -0.9157 -3.7970 14 6 8.3230 1.0265 -4.6359 15 7 7.7924 0.6291 -5.9423 16 6 8.1849 1.2956 -7.0722 17 1 8.8853 2.1145 -7.0003 18 6 7.6817 0.9194 -8.3100 19 7 6.8277 -0.0783 -8.3977 20 14 8.2167 1.8291 -9.8514 21 1 9.4221 1.1738 -10.4197 22 1 7.1188 1.7980 -10.8508 23 1 8.5346 3.2387 -9.5090 24 6 8.3764 0.4594 -2.2030 25 1 9.4544 0.3137 -2.2728 26 6 8.0805 1.9153 -1.8378 27 6 7.8040 -0.4594 -1.1251 28 7 3.5165 -1.2078 -0.0005 29 6 2.1985 -1.2027 0.0052 30 6 1.4413 -2.5055 0.0119 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 0.8900 0.5138 33 1 -0.3634 -0.8899 0.5138 34 1 4.3449 2.8136 1.0229 35 1 5.2246 2.3073 -0.4393 36 1 3.6868 3.1913 -0.5871 37 1 5.7309 -1.5981 -2.7123 38 1 4.5648 -0.3295 -2.2609 39 1 5.7607 0.1516 -4.4281 40 1 6.0276 1.4032 -3.1906 41 1 8.0564 2.0642 -4.4358 42 1 9.4082 0.9240 -4.6380 43 1 7.1624 -0.1057 -6.0068 44 1 6.4764 -0.3414 -9.2627 45 1 7.0025 2.0604 -1.7671 46 1 8.5428 2.1508 -0.8791 47 1 8.4858 2.5726 -2.6073 48 1 8.1877 -0.1597 -0.1499 49 1 8.0953 -1.4888 -1.3341 50 1 1.2584 -2.8248 -1.0143 51 1 2.0283 -3.2643 0.5292 52 1 0.4894 -2.3700 0.5253 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184779256.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:38 Heat of formation + Delta-G solvation = -9.177515 kcal Electronic energy + Delta-G solvation = -31632.270680 eV Core-core repulsion = 27630.744595 eV Total energy + Delta-G solvation = -4001.526085 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.73219 -41.30311 -39.34054 -36.62130 -36.14015 -35.60543 -34.75142 -33.25267 -32.04293 -31.40496 -30.06755 -28.55479 -28.17317 -26.97946 -25.53312 -24.60501 -24.26660 -23.47211 -22.72978 -21.34523 -19.75032 -19.43210 -19.07891 -18.46182 -17.52237 -16.81170 -16.67475 -16.35786 -16.19925 -15.83178 -15.48829 -15.39590 -15.35443 -14.85757 -14.63252 -14.60623 -14.40129 -14.05635 -14.00593 -13.90573 -13.85490 -13.66176 -13.59966 -13.36607 -13.19651 -12.97938 -12.82024 -12.80729 -12.72335 -12.51697 -12.48532 -12.19796 -12.07721 -11.92733 -11.90467 -11.64397 -11.58430 -11.26909 -11.23891 -10.89304 -10.24728 -9.95165 -9.79580 -8.95904 -7.93951 -5.21427 -0.59655 -0.10661 1.16484 1.47746 1.48684 1.57046 1.66030 2.34315 2.56724 2.76650 2.89899 3.21700 3.32291 3.39710 3.63347 3.68896 3.76454 3.78880 3.89155 3.97665 4.07613 4.14718 4.27553 4.28945 4.37330 4.44817 4.49352 4.58557 4.64766 4.66207 4.68868 4.69772 4.74067 4.77680 4.80625 4.83412 4.94961 4.95734 5.00126 5.05117 5.06263 5.14827 5.15648 5.25251 5.26690 5.43198 5.44168 5.51917 5.57647 6.03913 6.11718 6.28999 6.55582 6.78779 7.35666 8.12570 8.35798 9.29461 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.012112 B = 0.002807 C = 0.002521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.263512 B = 9971.438306 C =11105.658383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.098 3.902 3 N -0.452 5.452 4 C 0.104 3.896 5 C -0.101 4.101 6 C 0.020 3.980 7 C 0.589 3.411 8 O -0.556 6.556 9 N -0.584 5.584 10 C 0.125 3.875 11 C -0.117 4.117 12 C -0.077 4.077 13 H 0.070 0.930 14 C 0.160 3.840 15 N -0.743 5.743 16 C -0.243 4.243 17 H 0.073 0.927 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.969 3.031 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.271 1.271 24 C -0.090 4.090 25 H 0.100 0.900 26 C -0.143 4.143 27 C 0.117 3.883 28 N -0.428 5.428 29 C 0.069 3.931 30 C -0.100 4.100 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.114 0.886 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.021 0.979 42 H 0.019 0.981 43 H 0.375 0.625 44 H 0.251 0.749 45 H 0.046 0.954 46 H 0.062 0.938 47 H 0.057 0.943 48 H 0.094 0.906 49 H 0.086 0.914 50 H 0.098 0.902 51 H 0.077 0.923 52 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.612 -2.207 20.721 23.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.045 4.045 3 N -0.167 5.167 4 C -0.035 4.035 5 C -0.159 4.159 6 C -0.121 4.121 7 C 0.375 3.625 8 O -0.434 6.434 9 N -0.315 5.315 10 C 0.002 3.998 11 C -0.156 4.156 12 C -0.096 4.096 13 H 0.088 0.912 14 C 0.033 3.967 15 N -0.386 5.386 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.799 3.201 21 H -0.215 1.215 22 H -0.222 1.222 23 H -0.196 1.196 24 C -0.109 4.109 25 H 0.119 0.881 26 C -0.200 4.200 27 C -0.004 4.004 28 N -0.145 5.145 29 C -0.075 4.075 30 C -0.157 4.157 31 H 0.119 0.881 32 H 0.102 0.898 33 H 0.133 0.867 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.115 0.885 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.037 0.963 43 H 0.207 0.793 44 H 0.059 0.941 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.076 0.924 48 H 0.113 0.887 49 H 0.104 0.896 50 H 0.117 0.883 51 H 0.096 0.904 52 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.109 -1.909 21.165 23.980 hybrid contribution 0.233 0.179 -1.256 1.290 sum -10.877 -1.730 19.909 22.753 Atomic orbital electron populations 1.21014 0.84185 1.05742 1.05159 1.23104 1.00555 0.88150 0.92666 1.68285 1.07286 1.30065 1.11084 1.22369 0.90681 0.96238 0.94221 1.20783 0.98732 0.91768 1.04610 1.21726 0.95326 0.91170 1.03877 1.17744 0.85397 0.76018 0.83375 1.90762 1.69057 1.50308 1.33308 1.48011 1.08089 1.67409 1.08036 1.21644 0.95196 1.00480 0.82445 1.21828 0.96015 0.99708 0.98001 1.21185 0.94460 0.99736 0.94254 0.91200 1.20838 0.95517 0.96119 0.84183 1.42576 1.53835 1.40051 1.02133 1.19602 1.20146 1.11082 0.86637 0.90951 1.25496 1.00532 1.00049 1.00517 1.69798 1.36213 1.31746 1.24087 0.85200 0.76825 0.78447 0.79662 1.21500 1.22206 1.19625 1.21353 1.01018 0.95781 0.92749 0.88141 1.21858 1.01261 0.95467 1.01421 1.21771 0.77391 1.00577 1.00643 1.68250 1.09818 1.27926 1.08469 1.22855 0.89351 0.98874 0.96431 1.20949 0.99909 0.89869 1.05003 0.88072 0.89767 0.86736 0.88685 0.91065 0.88450 0.90078 0.91332 0.91779 0.91585 0.96071 0.96289 0.79286 0.94064 0.93500 0.91916 0.92420 0.88736 0.89619 0.88340 0.90397 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.96 9.79 71.24 0.70 -0.27 16 2 C 0.10 1.85 6.79 42.63 0.29 2.14 16 3 N -0.45 -10.81 10.34 -170.48 -1.76 -12.57 16 4 C 0.10 2.69 6.82 42.81 0.29 2.98 16 5 C -0.10 -2.24 9.89 71.24 0.70 -1.53 16 6 C 0.02 0.55 4.48 41.89 0.19 0.74 16 7 C 0.59 17.25 5.73 86.88 0.50 17.74 16 8 O -0.56 -18.87 16.52 -3.77 -0.06 -18.93 16 9 N -0.58 -15.23 2.42 -822.80 -1.99 -17.21 16 10 C 0.12 3.26 6.32 86.36 0.55 3.81 16 11 C -0.12 -3.49 4.90 30.67 0.15 -3.34 16 12 C -0.08 -2.31 1.96 -10.77 -0.02 -2.33 16 13 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 14 C 0.16 6.11 5.18 86.38 0.45 6.55 16 15 N -0.74 -36.78 5.32 -343.46 -1.83 -38.61 16 16 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 17 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 18 C -0.07 -4.19 5.50 84.86 0.47 -3.72 16 19 N -0.97 -58.38 13.06 21.65 0.28 -58.10 16 20 Si 0.97 45.86 29.55 68.60 2.03 47.89 16 21 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 22 H -0.30 -14.05 7.11 99.48 0.71 -13.35 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 C -0.09 -2.15 2.72 -10.86 -0.03 -2.18 16 25 H 0.10 2.16 8.14 -2.39 -0.02 2.15 16 26 C -0.14 -3.45 8.37 71.98 0.60 -2.85 16 27 C 0.12 2.75 5.79 86.22 0.50 3.25 16 28 N -0.43 -11.19 10.34 -172.53 -1.78 -12.98 16 29 C 0.07 1.36 6.79 42.68 0.29 1.65 16 30 C -0.10 -1.06 9.78 71.23 0.70 -0.36 16 31 H 0.10 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.11 0.38 5.93 -2.39 -0.01 0.37 16 34 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.07 1.66 6.27 -2.39 -0.01 1.64 16 36 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 1.83 6.35 -2.39 -0.02 1.81 16 39 H 0.06 2.25 7.15 -2.39 -0.02 2.23 16 40 H 0.07 1.99 6.34 -2.39 -0.02 1.97 16 41 H 0.02 0.83 6.74 -2.39 -0.02 0.81 16 42 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.37 19.58 6.85 -92.71 -0.63 18.95 16 44 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 45 H 0.05 1.19 5.34 -2.39 -0.01 1.18 16 46 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 47 H 0.06 1.46 6.58 -2.39 -0.02 1.44 16 48 H 0.09 2.27 6.99 -2.39 -0.02 2.25 16 49 H 0.09 1.79 8.14 -2.38 -0.02 1.77 16 50 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 51 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 52 H 0.12 0.47 5.94 -2.39 -0.01 0.45 16 Total: -1.00 -72.64 404.02 2.35 -70.29 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: 0.31 Total: 30.52 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: 7.16 Total: 9.70 kcal Atomic # 7 Polarization: -132.38 SS G_CDS: -7.08 Total: -139.46 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.06 Total: -18.93 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Total: -72.64 2.35 -70.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184779256.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.110 kcal (2) G-P(sol) polarization free energy of solvation -72.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds