Wall clock time and date at job start Wed Apr 1 2020 03:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30836 * 125.90004 * 2 1 4 4 N 1.40080 * 108.20757 * 180.25770 * 3 2 1 5 5 H 0.97000 * 126.04065 * 179.70067 * 4 3 2 6 6 C 1.34954 * 107.92493 * 359.72328 * 4 3 2 7 7 C 1.50696 * 126.12757 * 179.97438 * 6 4 3 8 8 C 1.35311 * 107.74223 * 359.97438 * 6 4 3 9 9 C 1.50704 * 126.03729 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.47118 * 89.99838 * 9 8 6 11 11 C 1.50704 * 109.47118 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99745 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00220 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99940 * 180.02562 * 13 11 10 15 15 H 1.08994 * 112.88896 * 333.15665 * 14 13 11 16 16 C 1.53952 * 113.66140 * 104.50635 * 14 13 11 17 17 C 1.53952 * 87.29627 * 89.73509 * 16 14 13 18 18 H 1.09002 * 113.66257 * 139.29664 * 17 16 14 19 19 N 1.46498 * 113.65985 * 270.26239 * 17 16 14 20 20 C 1.36943 * 119.99752 * 253.70920 * 19 17 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 17 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 17 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 C 1.52909 * 86.88438 * 24.78058 * 17 16 14 29 29 C 1.52909 * 121.14074 * 209.33275 * 28 17 16 30 30 C 1.53954 * 86.78350 * 209.37437 * 29 28 17 31 31 C 1.52905 * 121.14029 * 100.76712 * 28 17 16 32 32 H 1.09000 * 109.47100 * 270.20599 * 1 2 3 33 33 H 1.09000 * 109.47092 * 30.20673 * 1 2 3 34 34 H 1.08999 * 109.46778 * 150.20852 * 1 2 3 35 35 H 1.09002 * 109.46828 * 270.02154 * 7 6 4 36 36 H 1.08993 * 109.47015 * 30.02135 * 7 6 4 37 37 H 1.09000 * 109.47543 * 150.02448 * 7 6 4 38 38 H 1.09001 * 109.47007 * 329.99328 * 9 8 6 39 39 H 1.09003 * 109.47171 * 209.99728 * 9 8 6 40 40 H 1.09001 * 109.47353 * 60.00346 * 10 9 8 41 41 H 1.09003 * 109.47701 * 299.99699 * 10 9 8 42 42 H 0.96996 * 119.99760 * 359.97438 * 13 11 10 43 43 H 1.08996 * 113.57906 * 335.12828 * 16 14 13 44 44 H 1.08999 * 113.64511 * 204.34636 * 16 14 13 45 45 H 0.97001 * 120.00384 * 73.99275 * 19 17 16 46 46 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 47 47 H 1.09002 * 113.66323 * 323.85124 * 29 28 17 48 48 H 1.09001 * 113.66091 * 94.90602 * 29 28 17 49 49 H 1.08991 * 113.58006 * 270.13684 * 30 29 28 50 50 H 1.09002 * 113.57874 * 139.33852 * 30 29 28 51 51 H 1.08996 * 113.66435 * 265.10147 * 31 28 17 52 52 H 1.09003 * 113.66343 * 36.15604 * 31 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0114 6 6 3.6142 -0.7154 -0.0034 7 6 4.8350 -1.5989 -0.0084 8 6 2.3272 -1.1330 0.0046 9 6 1.8600 -2.5658 0.0106 10 6 1.7097 -3.0472 1.4550 11 6 1.2419 -4.4797 1.4610 12 8 1.0473 -5.0584 0.4131 13 7 1.0397 -5.1178 2.6308 14 6 0.5854 -6.5106 2.6365 15 1 0.0177 -6.7750 1.7444 16 6 1.6937 -7.5205 2.9855 17 6 1.2885 -7.3448 4.4603 18 1 1.2830 -8.2762 5.0265 19 7 2.0084 -6.2671 5.1434 20 6 2.9872 -6.5668 6.0530 21 1 3.2316 -7.5975 6.2634 22 6 3.6654 -5.5457 6.7045 23 7 3.3671 -4.2896 6.4484 24 14 5.0011 -5.9544 7.9447 25 1 5.1437 -7.4287 8.0508 26 1 6.2885 -5.3639 7.4984 27 1 4.6334 -5.3955 9.2705 28 6 -0.0906 -6.9314 3.9454 29 6 -0.9697 -5.9588 4.7324 30 6 -2.1776 -6.6849 4.1128 31 6 -1.2632 -7.9128 3.9501 32 1 -0.3633 0.0037 1.0277 33 1 -0.3633 0.8881 -0.5170 34 1 -0.3633 -0.8919 -0.5106 35 1 5.1238 -1.8136 -1.0373 36 1 5.6538 -1.0902 0.5002 37 1 4.6104 -2.5321 0.5081 38 1 2.5906 -3.1883 -0.5059 39 1 0.8984 -2.6365 -0.4979 40 1 0.9790 -2.4246 1.9714 41 1 2.6713 -2.9765 1.9635 42 1 1.1956 -4.6550 3.4688 43 1 2.6980 -7.1599 2.7633 44 1 1.5093 -8.5229 2.5992 45 1 1.7888 -5.3413 4.9545 46 1 3.8413 -3.5761 6.9034 47 1 -0.8948 -6.0779 5.8133 48 1 -0.8708 -4.9218 4.4112 49 1 -2.5050 -6.2566 3.1656 50 1 -2.9981 -6.8420 4.8131 51 1 -1.3988 -8.4369 3.0041 52 1 -1.2709 -8.5811 4.8112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203714038.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:23 Heat of formation + Delta-G solvation = 75.184561 kcal Electronic energy + Delta-G solvation = -31211.175123 eV Core-core repulsion = 27213.307252 eV Total energy + Delta-G solvation = -3997.867871 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.42117 -40.57552 -38.70714 -35.28541 -34.11370 -33.58567 -33.41404 -32.24121 -30.43892 -29.73862 -28.00825 -27.15587 -25.47764 -24.90304 -24.16292 -23.71931 -22.35997 -20.25443 -20.16914 -19.84827 -19.24246 -18.13085 -17.37962 -17.15023 -16.44042 -15.66201 -15.33511 -15.22879 -15.12151 -14.58300 -14.49849 -14.01991 -13.83983 -13.55363 -13.40424 -13.25254 -13.01142 -12.75748 -12.64428 -12.48768 -12.46295 -12.35692 -12.07531 -11.96211 -11.81978 -11.78126 -11.51818 -11.38557 -10.98210 -10.93129 -10.88263 -10.66464 -10.43522 -10.20776 -10.08264 -9.82708 -9.73794 -9.43895 -9.32584 -9.28179 -8.88846 -8.45175 -8.36182 -7.05421 -5.88556 -3.16371 1.79688 2.64152 2.79416 3.02679 3.36805 3.43588 3.45059 3.56164 4.48518 4.56720 4.62792 4.76755 4.93631 4.95196 4.99840 5.09709 5.16376 5.18755 5.29712 5.31178 5.35295 5.39152 5.43622 5.55998 5.58080 5.65434 5.68677 5.73198 5.84139 5.87862 5.89540 5.90211 5.99684 6.03859 6.07591 6.10801 6.14365 6.26008 6.30375 6.35022 6.35892 6.43733 6.63701 6.66941 6.72512 6.76151 6.98584 7.15175 7.22864 7.64549 7.65209 7.98368 8.31228 8.64618 9.42156 9.97876 10.31749 11.34168 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008262 B = 0.003435 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.227417 B = 8149.077856 C =10320.578772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.085 3.915 3 N -0.300 5.300 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.094 3.906 7 C -0.097 4.097 8 C -0.232 4.232 9 C -0.020 4.020 10 C -0.136 4.136 11 C 0.517 3.483 12 O -0.555 6.555 13 N -0.699 5.699 14 C 0.153 3.847 15 H 0.089 0.911 16 C -0.185 4.185 17 C 0.179 3.821 18 H 0.063 0.937 19 N -0.700 5.700 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.131 4.131 29 C -0.115 4.115 30 C -0.141 4.141 31 C -0.104 4.104 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.073 0.927 39 H 0.075 0.925 40 H 0.091 0.909 41 H 0.095 0.905 42 H 0.407 0.593 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.380 0.620 46 H 0.255 0.745 47 H 0.086 0.914 48 H 0.061 0.939 49 H 0.074 0.926 50 H 0.061 0.939 51 H 0.064 0.936 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.269 3.938 -11.846 13.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 N -0.124 5.124 4 N -0.187 5.187 5 H 0.279 0.721 6 C -0.035 4.035 7 C -0.155 4.155 8 C -0.243 4.243 9 C -0.059 4.059 10 C -0.176 4.176 11 C 0.304 3.696 12 O -0.434 6.434 13 N -0.351 5.351 14 C 0.047 3.953 15 H 0.107 0.893 16 C -0.228 4.228 17 C 0.067 3.933 18 H 0.081 0.919 19 N -0.339 5.339 20 C -0.370 4.370 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.134 4.134 29 C -0.153 4.153 30 C -0.179 4.179 31 C -0.143 4.143 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.245 0.755 43 H 0.089 0.911 44 H 0.094 0.906 45 H 0.215 0.785 46 H 0.065 0.935 47 H 0.105 0.895 48 H 0.080 0.920 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.083 0.917 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -5.235 4.747 -12.426 14.295 hybrid contribution 1.409 -0.067 1.153 1.822 sum -3.826 4.681 -11.273 12.791 Atomic orbital electron populations 1.20213 0.86800 1.03249 1.03195 1.22229 0.96917 0.90249 0.98795 1.77246 0.86514 1.22409 1.26227 1.46121 1.07236 1.04871 1.60444 0.72053 1.20930 0.97088 0.84815 1.00630 1.20516 0.92787 0.98824 1.03402 1.19738 0.91117 0.96376 1.17064 1.19550 1.02164 0.89341 0.94827 1.21666 1.03748 0.92781 0.99414 1.20673 0.76757 0.88705 0.83500 1.90642 1.52398 1.68759 1.31625 1.45791 1.67333 1.12963 1.09027 1.21434 0.95844 0.81518 0.96514 0.89324 1.24268 0.99154 0.97831 1.01515 1.21041 0.88820 0.92659 0.90758 0.91862 1.42093 1.41374 1.03191 1.47279 1.19326 1.10460 0.92737 1.14490 0.90907 1.24706 1.00229 0.95202 1.00500 1.69634 1.44498 0.97927 1.46072 0.86117 0.81581 0.77458 0.81020 1.20531 1.21916 1.21870 1.23473 0.95267 0.98194 0.96446 1.22504 0.94648 0.98007 1.00130 1.22857 0.96797 0.97535 1.00673 1.22482 0.94241 0.95788 1.01747 0.90321 0.91073 0.90198 0.90131 0.90997 0.89051 0.90797 0.90604 0.89081 0.88710 0.75484 0.91058 0.90649 0.78500 0.93485 0.89525 0.91999 0.90774 0.91989 0.91683 0.89722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.26 36.01 0.37 -0.38 16 2 C 0.08 1.08 7.22 -82.40 -0.59 0.49 16 3 N -0.30 -4.08 12.70 33.67 0.43 -3.65 16 4 N -0.48 -5.39 7.36 33.48 0.25 -5.14 16 5 H 0.44 3.52 8.96 -182.61 -1.64 1.88 16 6 C 0.09 1.07 7.21 -82.26 -0.59 0.48 16 7 C -0.10 -0.86 10.04 36.00 0.36 -0.50 16 8 C -0.23 -2.91 5.35 -105.05 -0.56 -3.47 16 9 C -0.02 -0.25 4.41 -27.88 -0.12 -0.37 16 10 C -0.14 -1.84 5.68 -27.88 -0.16 -1.99 16 11 C 0.52 8.39 7.83 -10.98 -0.09 8.30 16 12 O -0.56 -10.34 15.62 5.56 0.09 -10.25 16 13 N -0.70 -11.62 4.72 -53.22 -0.25 -11.87 16 14 C 0.15 2.52 4.09 -67.32 -0.28 2.24 16 15 H 0.09 1.48 7.54 -51.93 -0.39 1.09 16 16 C -0.19 -3.27 7.68 -25.74 -0.20 -3.46 16 17 C 0.18 3.39 4.35 -67.48 -0.29 3.09 16 18 H 0.06 1.21 8.11 -51.93 -0.42 0.79 16 19 N -0.70 -16.04 4.97 -52.99 -0.26 -16.31 16 20 C -0.24 -6.24 9.97 -15.06 -0.15 -6.39 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 23 N -0.93 -26.17 13.06 55.49 0.72 -25.44 16 24 Si 0.91 21.50 29.55 -169.99 -5.02 16.48 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 C -0.13 -2.05 0.78 -154.55 -0.12 -2.17 16 29 C -0.12 -1.76 7.22 -26.28 -0.19 -1.95 16 30 C -0.14 -1.79 8.08 -25.75 -0.21 -1.99 16 31 C -0.10 -1.36 7.84 -26.28 -0.21 -1.56 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.71 7.25 -51.93 -0.38 0.33 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.09 0.89 7.77 -51.93 -0.40 0.49 16 38 H 0.07 0.95 7.73 -51.93 -0.40 0.55 16 39 H 0.08 0.95 7.20 -51.93 -0.37 0.58 16 40 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.41 7.17 5.91 -40.82 -0.24 6.93 16 43 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 44 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.38 8.93 5.38 -40.82 -0.22 8.71 16 46 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 48 H 0.06 0.96 7.52 -51.93 -0.39 0.57 16 49 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 52 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 418.19 15.07 6.30 6.30 Total: -1.00 -31.41 418.19 -10.77 -42.18 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: -9.90 Total: 17.74 kcal Atomic # 6 Polarization: -6.91 SS G_CDS: -3.12 Total: -10.03 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: 0.88 Total: -62.42 kcal Atomic # 8 Polarization: -10.34 SS G_CDS: 0.09 Total: -10.25 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -31.41 -10.77 -42.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714038.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.368 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds