Wall clock time and date at job start Wed Apr 1 2020 03:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30836 * 125.90004 * 2 1 4 4 N 1.40080 * 108.20757 * 180.25770 * 3 2 1 5 5 H 0.97000 * 126.04065 * 179.70067 * 4 3 2 6 6 C 1.34954 * 107.92493 * 359.72328 * 4 3 2 7 7 C 1.50696 * 126.12757 * 179.97438 * 6 4 3 8 8 C 1.35311 * 107.74223 * 359.97438 * 6 4 3 9 9 C 1.50704 * 126.03729 * 180.02562 * 8 6 4 10 10 C 1.52995 * 109.47118 * 89.99838 * 9 8 6 11 11 C 1.50704 * 109.47118 * 179.97438 * 10 9 8 12 12 O 1.21279 * 119.99745 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00220 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99940 * 180.02562 * 13 11 10 15 15 H 1.08994 * 112.88896 * 333.15665 * 14 13 11 16 16 C 1.53952 * 113.66140 * 104.50635 * 14 13 11 17 17 C 1.53952 * 87.29627 * 89.73509 * 16 14 13 18 18 H 1.09002 * 113.66257 * 139.29664 * 17 16 14 19 19 N 1.46498 * 113.65985 * 270.26239 * 17 16 14 20 20 C 1.36943 * 119.99752 * 253.70920 * 19 17 16 21 21 H 1.08002 * 119.99793 * 0.27665 * 20 19 17 22 22 C 1.38811 * 120.00012 * 180.27737 * 20 19 17 23 23 N 1.31624 * 119.99698 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 120.00072 * 180.02562 * 22 20 19 25 25 H 1.48495 * 109.47159 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47290 * 120.00044 * 24 22 20 27 27 H 1.48503 * 109.47163 * 240.00049 * 24 22 20 28 28 C 1.52909 * 86.88438 * 24.78058 * 17 16 14 29 29 C 1.52909 * 121.14074 * 209.33275 * 28 17 16 30 30 C 1.53954 * 86.78350 * 209.37437 * 29 28 17 31 31 C 1.52905 * 121.14029 * 100.76712 * 28 17 16 32 32 H 1.09000 * 109.47100 * 270.20599 * 1 2 3 33 33 H 1.09000 * 109.47092 * 30.20673 * 1 2 3 34 34 H 1.08999 * 109.46778 * 150.20852 * 1 2 3 35 35 H 1.09002 * 109.46828 * 270.02154 * 7 6 4 36 36 H 1.08993 * 109.47015 * 30.02135 * 7 6 4 37 37 H 1.09000 * 109.47543 * 150.02448 * 7 6 4 38 38 H 1.09001 * 109.47007 * 329.99328 * 9 8 6 39 39 H 1.09003 * 109.47171 * 209.99728 * 9 8 6 40 40 H 1.09001 * 109.47353 * 60.00346 * 10 9 8 41 41 H 1.09003 * 109.47701 * 299.99699 * 10 9 8 42 42 H 0.96996 * 119.99760 * 359.97438 * 13 11 10 43 43 H 1.08996 * 113.57906 * 335.12828 * 16 14 13 44 44 H 1.08999 * 113.64511 * 204.34636 * 16 14 13 45 45 H 0.97001 * 120.00384 * 73.99275 * 19 17 16 46 46 H 0.96999 * 119.99739 * 180.02562 * 23 22 20 47 47 H 1.09002 * 113.66323 * 323.85124 * 29 28 17 48 48 H 1.09001 * 113.66091 * 94.90602 * 29 28 17 49 49 H 1.08991 * 113.58006 * 270.13684 * 30 29 28 50 50 H 1.09002 * 113.57874 * 139.33852 * 30 29 28 51 51 H 1.08996 * 113.66435 * 265.10147 * 31 28 17 52 52 H 1.09003 * 113.66343 * 36.15604 * 31 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6087 0.6341 -0.0060 5 1 4.3908 1.2079 -0.0114 6 6 3.6142 -0.7154 -0.0034 7 6 4.8350 -1.5989 -0.0084 8 6 2.3272 -1.1330 0.0046 9 6 1.8600 -2.5658 0.0106 10 6 1.7097 -3.0472 1.4550 11 6 1.2419 -4.4797 1.4610 12 8 1.0473 -5.0584 0.4131 13 7 1.0397 -5.1178 2.6308 14 6 0.5854 -6.5106 2.6365 15 1 0.0177 -6.7750 1.7444 16 6 1.6937 -7.5205 2.9855 17 6 1.2885 -7.3448 4.4603 18 1 1.2830 -8.2762 5.0265 19 7 2.0084 -6.2671 5.1434 20 6 2.9872 -6.5668 6.0530 21 1 3.2316 -7.5975 6.2634 22 6 3.6654 -5.5457 6.7045 23 7 3.3671 -4.2896 6.4484 24 14 5.0011 -5.9544 7.9447 25 1 5.1437 -7.4287 8.0508 26 1 6.2885 -5.3639 7.4984 27 1 4.6334 -5.3955 9.2705 28 6 -0.0906 -6.9314 3.9454 29 6 -0.9697 -5.9588 4.7324 30 6 -2.1776 -6.6849 4.1128 31 6 -1.2632 -7.9128 3.9501 32 1 -0.3633 0.0037 1.0277 33 1 -0.3633 0.8881 -0.5170 34 1 -0.3633 -0.8919 -0.5106 35 1 5.1238 -1.8136 -1.0373 36 1 5.6538 -1.0902 0.5002 37 1 4.6104 -2.5321 0.5081 38 1 2.5906 -3.1883 -0.5059 39 1 0.8984 -2.6365 -0.4979 40 1 0.9790 -2.4246 1.9714 41 1 2.6713 -2.9765 1.9635 42 1 1.1956 -4.6550 3.4688 43 1 2.6980 -7.1599 2.7633 44 1 1.5093 -8.5229 2.5992 45 1 1.7888 -5.3413 4.9545 46 1 3.8413 -3.5761 6.9034 47 1 -0.8948 -6.0779 5.8133 48 1 -0.8708 -4.9218 4.4112 49 1 -2.5050 -6.2566 3.1656 50 1 -2.9981 -6.8420 4.8131 51 1 -1.3988 -8.4369 3.0041 52 1 -1.2709 -8.5811 4.8112 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203714038.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:22 Heat of formation + Delta-G solvation = 56.792661 kcal Electronic energy + Delta-G solvation = -31211.972655 eV Core-core repulsion = 27213.307252 eV Total energy + Delta-G solvation = -3998.665403 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.34400 -41.90084 -40.01899 -36.66700 -35.34829 -35.08581 -34.28137 -33.76815 -31.77816 -31.15839 -28.88774 -28.06323 -26.78601 -26.33859 -25.39258 -25.14398 -23.77990 -21.53399 -21.19552 -21.07285 -20.19261 -19.64513 -18.83410 -18.32527 -17.71236 -16.92595 -16.77572 -16.47902 -16.15935 -16.13317 -15.79743 -15.41826 -15.01001 -14.79735 -14.57849 -14.41665 -14.14365 -13.88570 -13.77073 -13.62152 -13.33189 -13.24663 -13.21640 -13.14042 -13.06656 -12.89533 -12.87684 -12.72060 -12.68643 -12.49250 -12.10747 -11.97157 -11.92802 -11.80905 -11.39714 -11.28635 -11.11853 -10.81123 -10.72667 -10.61523 -10.19288 -9.81818 -9.31011 -8.94118 -7.93332 -5.19341 0.88648 1.47868 1.49896 1.58077 1.68042 1.71470 1.97383 2.28050 2.57739 3.39659 3.44936 3.63801 3.74284 3.75073 3.83869 3.92271 3.98285 4.07510 4.13283 4.21826 4.25049 4.31110 4.35204 4.49245 4.55406 4.66135 4.69028 4.70594 4.75841 4.78345 4.82296 4.85380 4.91906 4.99132 5.01854 5.05622 5.12260 5.14680 5.16254 5.19561 5.23663 5.24773 5.27861 5.36361 5.55560 5.58087 5.68437 5.74524 5.78303 6.30428 6.43454 6.62844 6.74235 7.30311 7.37898 8.12205 8.36478 9.29519 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008262 B = 0.003435 C = 0.002712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3388.227417 B = 8149.077856 C =10320.578772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.075 3.925 3 N -0.330 5.330 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.096 3.904 7 C -0.096 4.096 8 C -0.253 4.253 9 C -0.007 4.007 10 C -0.127 4.127 11 C 0.517 3.483 12 O -0.578 6.578 13 N -0.701 5.701 14 C 0.155 3.845 15 H 0.093 0.907 16 C -0.178 4.178 17 C 0.164 3.836 18 H 0.060 0.940 19 N -0.708 5.708 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.065 4.065 23 N -0.961 5.961 24 Si 0.964 3.036 25 H -0.270 1.270 26 H -0.297 1.297 27 H -0.296 1.296 28 C -0.122 4.122 29 C -0.122 4.122 30 C -0.126 4.126 31 C -0.096 4.096 32 H 0.084 0.916 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.102 0.898 41 H 0.089 0.911 42 H 0.402 0.598 43 H 0.042 0.958 44 H 0.100 0.900 45 H 0.375 0.625 46 H 0.250 0.750 47 H 0.069 0.931 48 H 0.054 0.946 49 H 0.082 0.918 50 H 0.079 0.921 51 H 0.083 0.917 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.033 3.092 -12.358 14.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.091 4.091 3 N -0.154 5.154 4 N -0.183 5.183 5 H 0.294 0.706 6 C -0.033 4.033 7 C -0.154 4.154 8 C -0.264 4.264 9 C -0.046 4.046 10 C -0.167 4.167 11 C 0.305 3.695 12 O -0.459 6.459 13 N -0.352 5.352 14 C 0.049 3.951 15 H 0.111 0.889 16 C -0.220 4.220 17 C 0.053 3.947 18 H 0.078 0.922 19 N -0.348 5.348 20 C -0.371 4.371 21 H 0.091 0.909 22 C -0.257 4.257 23 N -0.612 5.612 24 Si 0.794 3.206 25 H -0.195 1.195 26 H -0.224 1.224 27 H -0.223 1.223 28 C -0.124 4.124 29 C -0.160 4.160 30 C -0.163 4.163 31 C -0.134 4.134 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.239 0.761 43 H 0.061 0.939 44 H 0.118 0.882 45 H 0.209 0.791 46 H 0.059 0.941 47 H 0.088 0.912 48 H 0.073 0.927 49 H 0.100 0.900 50 H 0.097 0.903 51 H 0.101 0.899 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -6.011 3.872 -12.954 14.796 hybrid contribution 1.669 0.145 1.289 2.114 sum -4.342 4.016 -11.665 13.079 Atomic orbital electron populations 1.20308 0.85258 1.04092 1.03801 1.22671 0.98150 0.90085 0.98193 1.77192 0.87494 1.23218 1.27541 1.46160 1.07192 1.05083 1.59885 0.70615 1.21317 0.97685 0.85118 0.99172 1.20593 0.92233 0.97977 1.04594 1.19824 0.91772 0.96213 1.18616 1.19398 1.01995 0.89390 0.93846 1.21638 1.03539 0.91197 1.00351 1.21080 0.76022 0.89485 0.82903 1.90624 1.53506 1.69498 1.32246 1.45873 1.67253 1.13131 1.08919 1.21436 0.95388 0.81197 0.97088 0.88858 1.24194 0.97937 0.99483 1.00399 1.21268 0.90889 0.91577 0.90953 0.92183 1.42167 1.41352 1.03969 1.47285 1.19627 1.10522 0.92650 1.14251 0.90937 1.25348 1.02506 0.95270 1.02618 1.69756 1.45654 0.98470 1.47280 0.85215 0.79057 0.77560 0.78757 1.19492 1.22415 1.22305 1.23404 0.94210 0.99535 0.95225 1.22500 0.96502 0.97853 0.99152 1.22788 0.96169 0.96290 1.01079 1.22525 0.92066 0.95699 1.03095 0.89745 0.90297 0.89291 0.88423 0.89357 0.90025 0.91344 0.90591 0.87990 0.89253 0.76078 0.93939 0.88215 0.79067 0.94081 0.91209 0.92719 0.89961 0.90259 0.89862 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.44 10.26 71.24 0.73 -0.71 16 2 C 0.08 1.88 7.22 43.10 0.31 2.20 16 3 N -0.33 -8.83 12.70 -47.38 -0.60 -9.43 16 4 N -0.47 -10.33 7.36 -48.00 -0.35 -10.69 16 5 H 0.45 6.84 8.96 -213.33 -1.91 4.93 16 6 C 0.10 2.14 7.21 41.40 0.30 2.44 16 7 C -0.10 -1.60 10.04 71.23 0.71 -0.88 16 8 C -0.25 -6.24 5.35 -20.14 -0.11 -6.35 16 9 C -0.01 -0.18 4.41 29.85 0.13 -0.05 16 10 C -0.13 -3.43 5.68 29.85 0.17 -3.26 16 11 C 0.52 16.68 7.83 87.66 0.69 17.37 16 12 O -0.58 -21.24 15.62 -3.03 -0.05 -21.29 16 13 N -0.70 -23.26 4.72 -440.67 -2.08 -25.34 16 14 C 0.15 4.94 4.09 45.38 0.19 5.13 16 15 H 0.09 2.95 7.54 -2.39 -0.02 2.93 16 16 C -0.18 -6.15 7.68 31.23 0.24 -5.91 16 17 C 0.16 6.10 4.35 45.28 0.20 6.29 16 18 H 0.06 2.26 8.11 -2.39 -0.02 2.24 16 19 N -0.71 -32.80 4.97 -321.55 -1.60 -34.40 16 20 C -0.24 -12.52 9.97 84.03 0.84 -11.69 16 21 H 0.07 3.73 7.83 -2.91 -0.02 3.71 16 22 C -0.06 -3.50 5.50 84.86 0.47 -3.03 16 23 N -0.96 -54.75 13.06 21.65 0.28 -54.47 16 24 Si 0.96 44.49 29.55 68.60 2.03 46.51 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 27 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 28 C -0.12 -3.63 0.78 -52.21 -0.04 -3.67 16 29 C -0.12 -3.61 7.22 30.89 0.22 -3.38 16 30 C -0.13 -2.83 8.08 31.23 0.25 -2.58 16 31 C -0.10 -2.21 7.84 30.88 0.24 -1.97 16 32 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.09 1.49 7.25 -2.39 -0.02 1.47 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.08 1.55 7.77 -2.39 -0.02 1.53 16 38 H 0.07 1.75 7.73 -2.39 -0.02 1.73 16 39 H 0.08 1.86 7.20 -2.39 -0.02 1.85 16 40 H 0.10 2.52 8.14 -2.39 -0.02 2.50 16 41 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 42 H 0.40 14.38 5.91 -92.71 -0.55 13.83 16 43 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 45 H 0.38 17.97 5.38 -92.71 -0.50 17.47 16 46 H 0.25 13.97 8.31 -92.71 -0.77 13.20 16 47 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 48 H 0.05 1.67 7.52 -2.39 -0.02 1.65 16 49 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 52 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -67.03 418.19 1.15 -65.88 By element: Atomic # 1 Polarization: 55.30 SS G_CDS: -2.01 Total: 53.29 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.54 Total: -10.06 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -4.35 Total: -134.33 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: -0.05 Total: -21.29 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -67.03 1.15 -65.88 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714038.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.668 kcal (2) G-P(sol) polarization free energy of solvation -67.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds