Wall clock time and date at job start Wed Apr 1 2020 03:48:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30838 * 125.90008 * 2 1 4 4 N 1.40081 * 108.20230 * 180.02562 * 3 2 1 5 5 H 0.97006 * 126.03602 * 179.97438 * 4 3 2 6 6 C 1.34949 * 107.93106 * 359.75587 * 4 3 2 7 7 C 1.50701 * 126.12921 * 180.24077 * 6 4 3 8 8 C 1.35315 * 107.74328 * 0.38915 * 6 4 3 9 9 C 1.50697 * 126.04322 * 179.87310 * 8 6 4 10 10 C 1.52995 * 109.47328 * 269.71805 * 9 8 6 11 11 C 1.50705 * 109.47418 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99705 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99846 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99569 * 179.97438 * 13 11 10 15 15 H 1.09007 * 112.88557 * 23.65456 * 14 13 11 16 16 C 1.53949 * 113.66388 * 252.18747 * 14 13 11 17 17 C 1.53950 * 87.29535 * 270.26377 * 16 14 13 18 18 H 1.09008 * 113.74633 * 220.78601 * 17 16 14 19 19 N 1.46499 * 113.66341 * 89.73825 * 17 16 14 20 20 C 1.36939 * 119.99933 * 108.08949 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47201 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47080 * 120.00466 * 24 22 20 27 27 H 1.48506 * 109.47018 * 240.00565 * 24 22 20 28 28 C 1.52909 * 86.78227 * 335.26395 * 17 16 14 29 29 C 1.52907 * 121.14177 * 259.18037 * 28 17 16 30 30 C 1.53951 * 86.78403 * 209.38090 * 29 28 17 31 31 C 1.52906 * 121.13749 * 150.61521 * 28 17 16 32 32 H 1.09001 * 109.47723 * 269.97747 * 1 2 3 33 33 H 1.09003 * 109.47155 * 29.97892 * 1 2 3 34 34 H 1.08999 * 109.47544 * 149.97530 * 1 2 3 35 35 H 1.08999 * 109.46995 * 270.17192 * 7 6 4 36 36 H 1.08997 * 109.46974 * 30.17728 * 7 6 4 37 37 H 1.08998 * 109.46942 * 150.17446 * 7 6 4 38 38 H 1.08996 * 109.47292 * 149.71536 * 9 8 6 39 39 H 1.09002 * 109.47059 * 29.71551 * 9 8 6 40 40 H 1.09005 * 109.47267 * 59.99458 * 10 9 8 41 41 H 1.09002 * 109.46842 * 299.99878 * 10 9 8 42 42 H 0.97001 * 120.00224 * 359.97438 * 13 11 10 43 43 H 1.09002 * 113.58121 * 155.66071 * 16 14 13 44 44 H 1.08996 * 113.57817 * 24.86282 * 16 14 13 45 45 H 0.97001 * 119.99790 * 287.80923 * 19 17 16 46 46 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 47 47 H 1.08997 * 113.66251 * 323.85149 * 29 28 17 48 48 H 1.09002 * 113.66158 * 94.90664 * 29 28 17 49 49 H 1.09000 * 113.57860 * 270.12530 * 30 29 28 50 50 H 1.09001 * 113.64943 * 139.34808 * 30 29 28 51 51 H 1.09002 * 113.66647 * 265.09510 * 31 28 17 52 52 H 1.09003 * 113.66258 * 36.05869 * 31 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6340 -0.0006 5 1 4.3908 1.2078 -0.0011 6 6 3.6142 -0.7155 0.0045 7 6 4.8350 -1.5990 0.0110 8 6 2.3271 -1.1331 -0.0005 9 6 1.8598 -2.5658 -0.0002 10 6 1.7013 -3.0509 -1.4425 11 6 1.2345 -4.4838 -1.4423 12 8 1.0476 -5.0604 -0.3918 13 7 1.0249 -5.1245 -2.6094 14 6 0.5717 -6.5176 -2.6090 15 1 0.0584 -6.7962 -1.6886 16 6 1.6568 -7.5204 -3.0415 17 6 1.1613 -7.3222 -4.4856 18 1 1.1193 -8.2441 -5.0657 19 7 1.8372 -6.2330 -5.1948 20 6 2.7309 -6.5165 -6.1929 21 1 2.9407 -7.5432 -6.4542 22 6 3.3670 -5.4844 -6.8688 23 7 3.1115 -4.2331 -6.5500 24 14 4.5866 -5.8712 -8.2298 25 1 4.6962 -7.3431 -8.3926 26 1 4.1167 -5.2665 -9.5021 27 1 5.9161 -5.3114 -7.8770 28 6 -0.1823 -6.9180 -3.8776 29 6 -1.3535 -7.8995 -3.8247 30 6 -2.2754 -6.6694 -3.9088 31 6 -1.1085 -5.9326 -4.5910 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3634 -0.8897 -0.5142 35 1 5.1337 -1.8134 -1.0151 36 1 5.6488 -1.0904 0.5277 37 1 4.6052 -2.5323 0.5250 38 1 0.9012 -2.6352 0.5139 39 1 2.5933 -3.1871 0.5135 40 1 2.6599 -2.9814 -1.9567 41 1 0.9677 -2.4295 -1.9563 42 1 1.1741 -4.6632 -3.4495 43 1 1.4957 -8.5287 -2.6599 44 1 2.6727 -7.1619 -2.8761 45 1 1.6487 -5.3108 -4.9601 46 1 3.5563 -3.5119 -7.0222 47 1 -1.4160 -8.5533 -4.6946 48 1 -1.4295 -8.4395 -2.8809 49 1 -2.5422 -6.2572 -2.9357 50 1 -3.1391 -6.8139 -4.5580 51 1 -0.9889 -4.9011 -4.2595 52 1 -1.1010 -6.0324 -5.6765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203714041.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:33 Heat of formation + Delta-G solvation = 75.462975 kcal Electronic energy + Delta-G solvation = -31201.192706 eV Core-core repulsion = 27203.336908 eV Total energy + Delta-G solvation = -3997.855798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.42500 -40.59048 -38.71308 -35.28784 -34.12190 -33.58745 -33.41489 -32.24816 -30.44948 -29.74942 -28.02203 -27.14133 -25.46508 -24.90791 -24.15686 -23.73408 -22.36513 -20.25224 -20.16337 -19.87655 -19.24635 -18.14767 -17.37658 -17.14428 -16.44982 -15.64198 -15.36287 -15.24170 -15.09616 -14.58559 -14.48466 -14.02562 -13.84872 -13.57311 -13.40501 -13.24524 -13.00172 -12.77619 -12.63475 -12.50301 -12.47387 -12.35285 -12.07946 -11.97547 -11.83331 -11.76094 -11.51304 -11.39353 -10.98185 -10.94915 -10.88427 -10.65308 -10.43860 -10.20815 -10.07815 -9.82957 -9.74573 -9.43980 -9.31354 -9.28369 -8.89109 -8.45942 -8.36875 -7.06112 -5.88974 -3.16881 1.79658 2.63825 2.78669 3.01674 3.36700 3.43414 3.44940 3.55773 4.48373 4.55888 4.61768 4.78409 4.93090 4.94665 5.00694 5.09484 5.16328 5.19059 5.28886 5.31345 5.36001 5.40741 5.43231 5.55517 5.56971 5.65589 5.70615 5.72569 5.78851 5.88196 5.90324 5.92740 5.99393 6.03296 6.06070 6.11603 6.15154 6.25483 6.30035 6.35133 6.36840 6.44524 6.63325 6.66388 6.72263 6.76691 6.98439 7.14801 7.22540 7.64178 7.64780 7.98109 8.30805 8.63916 9.41679 9.97253 10.31010 11.33760 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008307 B = 0.003400 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3369.673210 B = 8233.152838 C =10349.811191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.085 3.915 3 N -0.300 5.300 4 N -0.479 5.479 5 H 0.436 0.564 6 C 0.093 3.907 7 C -0.097 4.097 8 C -0.232 4.232 9 C -0.020 4.020 10 C -0.136 4.136 11 C 0.516 3.484 12 O -0.556 6.556 13 N -0.700 5.700 14 C 0.151 3.849 15 H 0.090 0.910 16 C -0.186 4.186 17 C 0.179 3.821 18 H 0.065 0.935 19 N -0.700 5.700 20 C -0.240 4.240 21 H 0.073 0.927 22 C -0.010 4.010 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.133 4.133 29 C -0.104 4.104 30 C -0.141 4.141 31 C -0.115 4.115 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.095 0.905 41 H 0.091 0.909 42 H 0.408 0.592 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.380 0.620 46 H 0.255 0.745 47 H 0.084 0.916 48 H 0.064 0.936 49 H 0.073 0.927 50 H 0.061 0.939 51 H 0.061 0.939 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.505 3.752 12.350 13.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.082 4.082 3 N -0.124 5.124 4 N -0.187 5.187 5 H 0.279 0.721 6 C -0.035 4.035 7 C -0.156 4.156 8 C -0.243 4.243 9 C -0.059 4.059 10 C -0.176 4.176 11 C 0.303 3.697 12 O -0.435 6.435 13 N -0.352 5.352 14 C 0.046 3.954 15 H 0.108 0.892 16 C -0.228 4.228 17 C 0.067 3.933 18 H 0.083 0.917 19 N -0.339 5.339 20 C -0.371 4.371 21 H 0.091 0.909 22 C -0.206 4.206 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.135 4.135 29 C -0.142 4.142 30 C -0.179 4.179 31 C -0.152 4.152 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.109 0.891 42 H 0.246 0.754 43 H 0.094 0.906 44 H 0.089 0.911 45 H 0.215 0.785 46 H 0.065 0.935 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.080 0.920 51 H 0.080 0.920 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.476 4.568 12.916 14.413 hybrid contribution 1.341 -0.052 -1.200 1.800 sum -3.136 4.516 11.716 12.941 Atomic orbital electron populations 1.20207 0.86790 1.03484 1.02953 1.22235 0.96917 0.90233 0.98774 1.77248 0.86521 1.22407 1.26178 1.46119 1.07229 1.04854 1.60504 0.72055 1.20923 0.97089 0.84831 1.00650 1.20526 0.92613 0.98461 1.03962 1.19740 0.91118 0.96366 1.17083 1.19550 1.02168 0.89309 0.94838 1.21670 1.03757 0.92759 0.99432 1.20683 0.76722 0.88708 0.83539 1.90641 1.52554 1.68886 1.31371 1.45818 1.67319 1.12957 1.09071 1.21393 0.95605 0.81543 0.96885 0.89169 1.24278 0.99306 0.97881 1.01307 1.21046 0.89150 0.92520 0.90574 0.91737 1.42103 1.48522 1.03115 1.40183 1.19330 1.15619 0.92777 1.09333 0.90884 1.24709 1.00624 0.95195 1.00103 1.69634 1.46476 0.97782 1.44240 0.86114 0.80845 0.77433 0.81766 1.20525 1.21868 1.21902 1.23455 0.94978 0.98206 0.96903 1.22479 0.94245 0.95754 1.01760 1.22855 0.96910 0.97518 1.00587 1.22493 0.94674 0.97902 1.00163 0.90538 0.90924 0.90163 0.89624 0.91253 0.89253 0.90615 0.90795 0.88711 0.89071 0.75405 0.90594 0.91052 0.78517 0.93470 0.89741 0.91704 0.90796 0.92011 0.92024 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 10.12 36.00 0.36 -0.39 16 2 C 0.09 1.09 7.22 -82.41 -0.59 0.49 16 3 N -0.30 -4.06 12.70 33.67 0.43 -3.63 16 4 N -0.48 -5.36 7.36 33.48 0.25 -5.12 16 5 H 0.44 3.49 8.96 -182.61 -1.64 1.85 16 6 C 0.09 1.06 7.21 -82.26 -0.59 0.47 16 7 C -0.10 -0.85 10.22 36.01 0.37 -0.48 16 8 C -0.23 -2.90 5.35 -105.05 -0.56 -3.46 16 9 C -0.02 -0.25 4.45 -27.89 -0.12 -0.37 16 10 C -0.14 -1.83 5.68 -27.88 -0.16 -1.99 16 11 C 0.52 8.35 7.83 -10.98 -0.09 8.27 16 12 O -0.56 -10.29 15.58 5.56 0.09 -10.21 16 13 N -0.70 -11.64 4.69 -53.37 -0.25 -11.89 16 14 C 0.15 2.50 4.12 -67.48 -0.28 2.22 16 15 H 0.09 1.51 7.46 -51.92 -0.39 1.13 16 16 C -0.19 -3.25 7.68 -25.75 -0.20 -3.45 16 17 C 0.18 3.38 4.36 -67.48 -0.29 3.09 16 18 H 0.06 1.23 8.10 -51.92 -0.42 0.81 16 19 N -0.70 -16.03 4.98 -52.99 -0.26 -16.30 16 20 C -0.24 -6.25 9.97 -15.06 -0.15 -6.40 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.28 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -26.16 13.06 55.49 0.72 -25.44 16 24 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 28 C -0.13 -2.09 0.78 -154.71 -0.12 -2.21 16 29 C -0.10 -1.36 7.84 -26.28 -0.21 -1.57 16 30 C -0.14 -1.81 8.08 -25.75 -0.21 -2.01 16 31 C -0.11 -1.77 7.27 -26.29 -0.19 -1.96 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.74 7.92 -51.93 -0.41 0.33 16 35 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.77 7.14 -51.93 -0.37 0.40 16 38 H 0.08 0.95 7.88 -51.93 -0.41 0.54 16 39 H 0.07 0.94 7.09 -51.93 -0.37 0.57 16 40 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.41 7.23 5.94 -40.82 -0.24 6.98 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.38 8.92 5.33 -40.82 -0.22 8.70 16 46 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 47 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 49 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.06 0.97 7.58 -51.93 -0.39 0.57 16 52 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 418.32 15.07 6.30 6.30 Total: -1.00 -31.36 418.32 -10.78 -42.14 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: -9.90 Total: 17.80 kcal Atomic # 6 Polarization: -6.98 SS G_CDS: -3.13 Total: -10.11 kcal Atomic # 7 Polarization: -63.26 SS G_CDS: 0.88 Total: -62.38 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.09 Total: -10.21 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.30 Total: 6.30 kcal Total: -31.36 -10.78 -42.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714041.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.598 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.135 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds