Wall clock time and date at job start Wed Apr 1 2020 03:48:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30838 * 125.90008 * 2 1 4 4 N 1.40081 * 108.20230 * 180.02562 * 3 2 1 5 5 H 0.97006 * 126.03602 * 179.97438 * 4 3 2 6 6 C 1.34949 * 107.93106 * 359.75587 * 4 3 2 7 7 C 1.50701 * 126.12921 * 180.24077 * 6 4 3 8 8 C 1.35315 * 107.74328 * 0.38915 * 6 4 3 9 9 C 1.50697 * 126.04322 * 179.87310 * 8 6 4 10 10 C 1.52995 * 109.47328 * 269.71805 * 9 8 6 11 11 C 1.50705 * 109.47418 * 179.97438 * 10 9 8 12 12 O 1.21278 * 119.99705 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99846 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99569 * 179.97438 * 13 11 10 15 15 H 1.09007 * 112.88557 * 23.65456 * 14 13 11 16 16 C 1.53949 * 113.66388 * 252.18747 * 14 13 11 17 17 C 1.53950 * 87.29535 * 270.26377 * 16 14 13 18 18 H 1.09008 * 113.74633 * 220.78601 * 17 16 14 19 19 N 1.46499 * 113.66341 * 89.73825 * 17 16 14 20 20 C 1.36939 * 119.99933 * 108.08949 * 19 17 16 21 21 H 1.08001 * 119.99700 * 359.72658 * 20 19 17 22 22 C 1.38810 * 120.00095 * 179.71972 * 20 19 17 23 23 N 1.31624 * 119.99740 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 120.00044 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47201 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47080 * 120.00466 * 24 22 20 27 27 H 1.48506 * 109.47018 * 240.00565 * 24 22 20 28 28 C 1.52909 * 86.78227 * 335.26395 * 17 16 14 29 29 C 1.52907 * 121.14177 * 259.18037 * 28 17 16 30 30 C 1.53951 * 86.78403 * 209.38090 * 29 28 17 31 31 C 1.52906 * 121.13749 * 150.61521 * 28 17 16 32 32 H 1.09001 * 109.47723 * 269.97747 * 1 2 3 33 33 H 1.09003 * 109.47155 * 29.97892 * 1 2 3 34 34 H 1.08999 * 109.47544 * 149.97530 * 1 2 3 35 35 H 1.08999 * 109.46995 * 270.17192 * 7 6 4 36 36 H 1.08997 * 109.46974 * 30.17728 * 7 6 4 37 37 H 1.08998 * 109.46942 * 150.17446 * 7 6 4 38 38 H 1.08996 * 109.47292 * 149.71536 * 9 8 6 39 39 H 1.09002 * 109.47059 * 29.71551 * 9 8 6 40 40 H 1.09005 * 109.47267 * 59.99458 * 10 9 8 41 41 H 1.09002 * 109.46842 * 299.99878 * 10 9 8 42 42 H 0.97001 * 120.00224 * 359.97438 * 13 11 10 43 43 H 1.09002 * 113.58121 * 155.66071 * 16 14 13 44 44 H 1.08996 * 113.57817 * 24.86282 * 16 14 13 45 45 H 0.97001 * 119.99790 * 287.80923 * 19 17 16 46 46 H 0.96998 * 119.99409 * 179.97438 * 23 22 20 47 47 H 1.08997 * 113.66251 * 323.85149 * 29 28 17 48 48 H 1.09002 * 113.66158 * 94.90664 * 29 28 17 49 49 H 1.09000 * 113.57860 * 270.12530 * 30 29 28 50 50 H 1.09001 * 113.64943 * 139.34808 * 30 29 28 51 51 H 1.09002 * 113.66647 * 265.09510 * 31 28 17 52 52 H 1.09003 * 113.66258 * 36.05869 * 31 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6340 -0.0006 5 1 4.3908 1.2078 -0.0011 6 6 3.6142 -0.7155 0.0045 7 6 4.8350 -1.5990 0.0110 8 6 2.3271 -1.1331 -0.0005 9 6 1.8598 -2.5658 -0.0002 10 6 1.7013 -3.0509 -1.4425 11 6 1.2345 -4.4838 -1.4423 12 8 1.0476 -5.0604 -0.3918 13 7 1.0249 -5.1245 -2.6094 14 6 0.5717 -6.5176 -2.6090 15 1 0.0584 -6.7962 -1.6886 16 6 1.6568 -7.5204 -3.0415 17 6 1.1613 -7.3222 -4.4856 18 1 1.1193 -8.2441 -5.0657 19 7 1.8372 -6.2330 -5.1948 20 6 2.7309 -6.5165 -6.1929 21 1 2.9407 -7.5432 -6.4542 22 6 3.3670 -5.4844 -6.8688 23 7 3.1115 -4.2331 -6.5500 24 14 4.5866 -5.8712 -8.2298 25 1 4.6962 -7.3431 -8.3926 26 1 4.1167 -5.2665 -9.5021 27 1 5.9161 -5.3114 -7.8770 28 6 -0.1823 -6.9180 -3.8776 29 6 -1.3535 -7.8995 -3.8247 30 6 -2.2754 -6.6694 -3.9088 31 6 -1.1085 -5.9326 -4.5910 32 1 -0.3634 -0.0004 1.0276 33 1 -0.3633 0.8902 -0.5135 34 1 -0.3634 -0.8897 -0.5142 35 1 5.1337 -1.8134 -1.0151 36 1 5.6488 -1.0904 0.5277 37 1 4.6052 -2.5323 0.5250 38 1 0.9012 -2.6352 0.5139 39 1 2.5933 -3.1871 0.5135 40 1 2.6599 -2.9814 -1.9567 41 1 0.9677 -2.4295 -1.9563 42 1 1.1741 -4.6632 -3.4495 43 1 1.4957 -8.5287 -2.6599 44 1 2.6727 -7.1619 -2.8761 45 1 1.6487 -5.3108 -4.9601 46 1 3.5563 -3.5119 -7.0222 47 1 -1.4160 -8.5533 -4.6946 48 1 -1.4295 -8.4395 -2.8809 49 1 -2.5422 -6.2572 -2.9357 50 1 -3.1391 -6.8139 -4.5580 51 1 -0.9889 -4.9011 -4.2595 52 1 -1.1010 -6.0324 -5.6765 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203714041.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:48:32 Heat of formation + Delta-G solvation = 57.151996 kcal Electronic energy + Delta-G solvation = -31201.986729 eV Core-core repulsion = 27203.336908 eV Total energy + Delta-G solvation = -3998.649821 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34332 -41.91652 -40.02263 -36.67180 -35.34815 -35.08854 -34.27684 -33.77003 -31.78540 -31.16481 -28.89993 -28.04106 -26.77913 -26.34063 -25.38782 -25.15596 -23.78421 -21.52638 -21.22265 -21.07127 -20.19119 -19.65859 -18.82609 -18.31645 -17.72290 -16.90727 -16.77428 -16.49803 -16.17021 -16.10722 -15.78836 -15.41601 -15.01906 -14.79387 -14.58023 -14.40962 -14.14399 -13.90102 -13.77910 -13.61712 -13.33949 -13.25161 -13.21103 -13.14149 -13.07413 -12.90261 -12.88888 -12.69594 -12.66879 -12.49106 -12.10628 -11.98358 -11.92029 -11.80841 -11.39744 -11.29457 -11.12043 -10.80159 -10.73004 -10.61243 -10.19118 -9.82126 -9.31265 -8.94461 -7.93457 -5.19556 0.89016 1.48062 1.50066 1.58260 1.68101 1.70859 1.97303 2.27720 2.57835 3.39795 3.46035 3.63702 3.74412 3.75109 3.83946 3.91765 3.98600 4.07874 4.15144 4.21720 4.24623 4.30816 4.35267 4.49588 4.56116 4.65307 4.68640 4.70845 4.74731 4.80024 4.83097 4.85289 4.91749 4.99103 5.01365 5.05557 5.12441 5.14741 5.15893 5.16402 5.23941 5.25341 5.28062 5.37959 5.55629 5.58194 5.68404 5.74377 5.78140 6.30310 6.43784 6.62623 6.74180 7.29788 7.37765 8.11913 8.35994 9.29433 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008307 B = 0.003400 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3369.673210 B = 8233.152838 C =10349.811191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.075 3.925 3 N -0.330 5.330 4 N -0.474 5.474 5 H 0.448 0.552 6 C 0.096 3.904 7 C -0.096 4.096 8 C -0.253 4.253 9 C -0.007 4.007 10 C -0.128 4.128 11 C 0.517 3.483 12 O -0.578 6.578 13 N -0.702 5.702 14 C 0.153 3.847 15 H 0.095 0.905 16 C -0.178 4.178 17 C 0.163 3.837 18 H 0.062 0.938 19 N -0.709 5.709 20 C -0.239 4.239 21 H 0.073 0.927 22 C -0.065 4.065 23 N -0.962 5.962 24 Si 0.964 3.036 25 H -0.270 1.270 26 H -0.296 1.296 27 H -0.297 1.297 28 C -0.123 4.123 29 C -0.095 4.095 30 C -0.126 4.126 31 C -0.122 4.122 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.101 0.899 42 H 0.402 0.598 43 H 0.101 0.899 44 H 0.043 0.957 45 H 0.375 0.625 46 H 0.250 0.750 47 H 0.092 0.908 48 H 0.083 0.917 49 H 0.081 0.919 50 H 0.078 0.922 51 H 0.053 0.947 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.178 2.829 12.952 14.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 N -0.154 5.154 4 N -0.184 5.184 5 H 0.294 0.706 6 C -0.033 4.033 7 C -0.154 4.154 8 C -0.264 4.264 9 C -0.046 4.046 10 C -0.168 4.168 11 C 0.305 3.695 12 O -0.458 6.458 13 N -0.353 5.353 14 C 0.048 3.952 15 H 0.113 0.887 16 C -0.219 4.219 17 C 0.053 3.947 18 H 0.080 0.920 19 N -0.348 5.348 20 C -0.371 4.371 21 H 0.091 0.909 22 C -0.258 4.258 23 N -0.612 5.612 24 Si 0.794 3.206 25 H -0.195 1.195 26 H -0.223 1.223 27 H -0.224 1.224 28 C -0.126 4.126 29 C -0.133 4.133 30 C -0.164 4.164 31 C -0.160 4.160 32 H 0.107 0.893 33 H 0.095 0.905 34 H 0.104 0.896 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.109 0.891 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.119 0.881 42 H 0.239 0.761 43 H 0.119 0.881 44 H 0.062 0.938 45 H 0.209 0.791 46 H 0.059 0.941 47 H 0.111 0.889 48 H 0.101 0.899 49 H 0.100 0.900 50 H 0.097 0.903 51 H 0.072 0.928 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.162 3.614 13.535 14.930 hybrid contribution 1.570 0.185 -1.363 2.088 sum -3.591 3.800 12.172 13.247 Atomic orbital electron populations 1.20300 0.85304 1.03922 1.03923 1.22673 0.98128 0.90113 0.98206 1.77193 0.87525 1.23218 1.27504 1.46163 1.07169 1.05101 1.59924 0.70614 1.21321 0.97701 0.85115 0.99153 1.20605 0.92310 0.98277 1.04223 1.19829 0.91784 0.96200 1.18619 1.19400 1.02003 0.89368 0.93847 1.21645 1.03581 0.91154 1.00379 1.21085 0.75985 0.89478 0.82926 1.90624 1.53635 1.69614 1.31971 1.45901 1.67270 1.13131 1.08952 1.21395 0.95232 0.81255 0.97355 0.88749 1.24201 0.98004 0.99534 1.00210 1.21274 0.91201 0.91416 0.90808 0.92029 1.42181 1.48576 1.03926 1.40111 1.19635 1.15354 0.92698 1.09369 0.90868 1.25353 1.02705 0.95246 1.02458 1.69757 1.47726 0.98311 1.45405 0.85210 0.78608 0.77562 0.79180 1.19452 1.22334 1.22412 1.23387 0.94081 0.99536 0.95569 1.22519 0.92044 0.95653 1.03127 1.22786 0.96462 0.96284 1.00831 1.22487 0.96467 0.97736 0.99268 0.89259 0.90516 0.89646 0.89752 0.88788 0.89139 0.90693 0.91184 0.89149 0.88091 0.76061 0.88108 0.93800 0.79092 0.94078 0.88944 0.89865 0.90044 0.90287 0.92832 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.45 10.12 71.23 0.72 -0.73 16 2 C 0.07 1.88 7.22 43.10 0.31 2.19 16 3 N -0.33 -8.83 12.70 -47.38 -0.60 -9.43 16 4 N -0.47 -10.28 7.36 -48.00 -0.35 -10.63 16 5 H 0.45 6.78 8.96 -213.32 -1.91 4.86 16 6 C 0.10 2.11 7.21 41.41 0.30 2.41 16 7 C -0.10 -1.56 10.22 71.24 0.73 -0.83 16 8 C -0.25 -6.21 5.35 -20.14 -0.11 -6.32 16 9 C -0.01 -0.18 4.45 29.85 0.13 -0.05 16 10 C -0.13 -3.42 5.68 29.85 0.17 -3.25 16 11 C 0.52 16.60 7.83 87.66 0.69 17.29 16 12 O -0.58 -21.08 15.58 -3.02 -0.05 -21.13 16 13 N -0.70 -23.30 4.69 -441.14 -2.07 -25.36 16 14 C 0.15 4.90 4.12 45.28 0.19 5.09 16 15 H 0.09 2.99 7.46 -2.38 -0.02 2.97 16 16 C -0.18 -6.07 7.68 31.23 0.24 -5.83 16 17 C 0.16 6.08 4.36 45.28 0.20 6.28 16 18 H 0.06 2.31 8.10 -2.38 -0.02 2.29 16 19 N -0.71 -32.77 4.98 -321.55 -1.60 -34.37 16 20 C -0.24 -12.50 9.97 84.03 0.84 -11.67 16 21 H 0.07 3.75 7.83 -2.91 -0.02 3.73 16 22 C -0.06 -3.51 5.50 84.86 0.47 -3.04 16 23 N -0.96 -54.78 13.06 21.65 0.28 -54.50 16 24 Si 0.96 44.44 29.55 68.60 2.03 46.47 16 25 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 27 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 28 C -0.12 -3.71 0.78 -52.31 -0.04 -3.75 16 29 C -0.10 -2.21 7.84 30.88 0.24 -1.97 16 30 C -0.13 -2.88 8.08 31.23 0.25 -2.63 16 31 C -0.12 -3.63 7.27 30.88 0.22 -3.41 16 32 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.08 1.51 7.92 -2.39 -0.02 1.49 16 35 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 36 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.47 7.14 -2.39 -0.02 1.45 16 38 H 0.07 1.84 7.88 -2.39 -0.02 1.82 16 39 H 0.07 1.76 7.09 -2.39 -0.02 1.74 16 40 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 41 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.40 14.49 5.94 -92.71 -0.55 13.94 16 43 H 0.10 2.91 8.14 -2.39 -0.02 2.89 16 44 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.37 17.95 5.33 -92.71 -0.49 17.46 16 46 H 0.25 13.98 8.31 -92.71 -0.77 13.21 16 47 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 49 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 50 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 51 H 0.05 1.66 7.58 -2.39 -0.02 1.65 16 52 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -66.89 418.32 1.17 -65.72 By element: Atomic # 1 Polarization: 55.46 SS G_CDS: -2.01 Total: 53.45 kcal Atomic # 6 Polarization: -15.76 SS G_CDS: 5.55 Total: -10.21 kcal Atomic # 7 Polarization: -129.95 SS G_CDS: -4.34 Total: -134.29 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.05 Total: -21.13 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -66.89 1.17 -65.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203714041.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.867 kcal (2) G-P(sol) polarization free energy of solvation -66.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds