Wall clock time and date at job start Wed Apr 1 2020 04:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 113.19488 * 2 1 4 4 C 1.55774 * 114.08043 * 132.67534 * 2 1 3 5 5 H 1.09003 * 114.13065 * 36.91190 * 4 2 1 6 6 N 1.46498 * 114.12619 * 264.52844 * 4 2 1 7 7 C 1.34775 * 119.99851 * 155.00062 * 6 4 2 8 8 O 1.21284 * 120.00298 * 0.02562 * 7 6 4 9 9 C 1.50706 * 119.99841 * 180.02562 * 7 6 4 10 10 C 1.53004 * 109.47191 * 180.02562 * 9 7 6 11 11 N 1.46494 * 109.47475 * 179.97438 * 10 9 7 12 12 C 1.34944 * 126.03717 * 124.70884 * 11 10 9 13 13 C 1.35316 * 107.74539 * 179.84227 * 12 11 10 14 14 C 1.39865 * 107.92127 * 0.42481 * 13 12 11 15 15 N 1.30838 * 108.20286 * 359.74249 * 14 13 12 16 16 C 1.50013 * 83.86083 * 150.81230 * 4 2 1 17 17 H 1.08998 * 112.50747 * 76.12692 * 16 4 2 18 18 C 1.51208 * 126.15834 * 218.52237 * 16 4 2 19 19 C 1.54088 * 106.19456 * 161.40907 * 18 16 4 20 20 C 1.52501 * 112.67890 * 304.56084 * 19 18 16 21 21 N 1.48408 * 111.86202 * 46.78459 * 20 19 18 22 22 C 1.36945 * 123.16400 * 128.14117 * 21 20 19 23 23 H 1.07997 * 120.00052 * 210.40096 * 22 21 20 24 24 C 1.38811 * 119.99966 * 30.40263 * 22 21 20 25 25 N 1.31615 * 119.99996 * 215.56338 * 24 22 21 26 26 Si 1.86798 * 119.99792 * 35.57091 * 24 22 21 27 27 H 1.48497 * 109.47404 * 84.57055 * 26 24 22 28 28 H 1.48501 * 109.47099 * 204.56546 * 26 24 22 29 29 H 1.48497 * 109.47459 * 324.56606 * 26 24 22 30 30 C 1.45376 * 113.66670 * 308.16382 * 21 20 19 31 31 H 1.08992 * 111.70116 * 300.47417 * 30 21 20 32 32 H 1.08995 * 109.47050 * 306.83263 * 1 2 3 33 33 H 1.08993 * 109.46993 * 186.82848 * 1 2 3 34 34 H 1.09007 * 109.47039 * 66.82704 * 1 2 3 35 35 H 1.09006 * 109.46760 * 66.19035 * 3 2 1 36 36 H 1.08996 * 109.46831 * 186.19161 * 3 2 1 37 37 H 1.09003 * 109.47099 * 306.19250 * 3 2 1 38 38 H 0.97007 * 120.00336 * 335.00974 * 6 4 2 39 39 H 1.09001 * 109.47180 * 300.00122 * 9 7 6 40 40 H 1.08996 * 109.47338 * 60.00089 * 9 7 6 41 41 H 1.09001 * 109.46911 * 299.99984 * 10 9 7 42 42 H 1.09004 * 109.46918 * 59.99515 * 10 9 7 43 43 H 1.08005 * 126.12875 * 0.02562 * 12 11 10 44 44 H 1.08009 * 126.04036 * 180.16621 * 13 12 11 45 45 H 1.07999 * 125.89869 * 179.75321 * 14 13 12 46 46 H 1.08999 * 110.10006 * 280.57646 * 18 16 4 47 47 H 1.08994 * 110.10213 * 42.24331 * 18 16 4 48 48 H 1.09000 * 108.84470 * 183.73561 * 19 18 16 49 49 H 1.09005 * 108.84380 * 65.38677 * 19 18 16 50 50 H 1.08995 * 109.00208 * 286.17559 * 20 19 18 51 51 H 1.08996 * 108.94109 * 167.35859 * 20 19 18 52 52 H 0.96999 * 119.99765 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1327 1.4063 0.0000 4 6 2.1656 -0.9640 1.0456 5 1 1.6213 -1.8990 1.1783 6 7 2.5263 -0.3208 2.3114 7 6 2.6003 -1.0515 3.4415 8 8 2.3686 -2.2416 3.4104 9 6 2.9708 -0.3898 4.7438 10 6 2.9834 -1.4347 5.8614 11 7 3.3441 -0.7916 7.1272 12 6 2.6244 -0.8252 8.2682 13 6 3.2987 -0.1154 9.2023 14 6 4.4658 0.3768 8.6092 15 7 4.4941 -0.0278 7.3653 16 6 3.2890 -1.0394 0.0542 17 1 3.9182 -0.1494 0.0682 18 6 4.0874 -2.2744 -0.2971 19 6 4.7654 -1.9778 -1.6487 20 6 3.7687 -1.5765 -2.7309 21 7 2.8027 -0.5608 -2.2434 22 6 2.5572 0.6155 -2.9001 23 1 2.2727 1.4958 -2.3429 24 6 2.6739 0.6764 -4.2820 25 7 3.1308 1.7690 -4.8563 26 14 2.1824 -0.7922 -5.3264 27 1 0.7201 -0.7511 -5.5815 28 1 2.9118 -0.7466 -6.6191 29 1 2.5247 -2.0466 -4.6090 30 6 2.1420 -0.9321 -1.0028 31 1 1.5851 -1.8633 -1.1058 32 1 -0.3633 0.6160 0.8225 33 1 -0.3633 -1.0203 0.1222 34 1 -0.3633 0.4044 -0.9448 35 1 1.8944 1.9037 0.9403 36 1 3.2148 1.3379 -0.1108 37 1 1.7180 1.9793 -0.8294 38 1 2.7119 0.6310 2.3363 39 1 3.9603 0.0586 4.6549 40 1 2.2407 0.3848 4.9784 41 1 1.9940 -1.8834 5.9504 42 1 3.7137 -2.2090 5.6266 43 1 1.6808 -1.3308 8.4112 44 1 2.9882 0.0464 10.2241 45 1 5.2145 0.9855 9.0943 46 1 4.8416 -2.4628 0.4669 47 1 3.4248 -3.1347 -0.3914 48 1 5.3015 -2.8683 -1.9766 49 1 5.4824 -1.1680 -1.5127 50 1 3.2205 -2.4613 -3.0542 51 1 4.3150 -1.1676 -3.5809 52 1 3.2127 1.8114 -5.8219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264030044.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:24 Heat of formation + Delta-G solvation = 113.476190 kcal Electronic energy + Delta-G solvation = -31336.228844 eV Core-core repulsion = 27340.021423 eV Total energy + Delta-G solvation = -3996.207421 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.40354 -41.13442 -39.22378 -35.60994 -34.50012 -33.41642 -33.02641 -30.95982 -30.66495 -29.81788 -29.47185 -27.31990 -26.05432 -25.37172 -24.07095 -22.30482 -21.41241 -21.23850 -20.56022 -20.19203 -19.63139 -18.42993 -17.76420 -16.80294 -16.55375 -16.05520 -15.95060 -15.13507 -14.92533 -14.57146 -14.36853 -14.22833 -13.95297 -13.69956 -13.56184 -13.39830 -13.20337 -13.00881 -12.98481 -12.77257 -12.55963 -12.50559 -12.08135 -11.80639 -11.71612 -11.68676 -11.46685 -11.21876 -11.10741 -10.88864 -10.67378 -10.53065 -10.50447 -10.34499 -10.02506 -9.91761 -9.72354 -9.63912 -9.43840 -9.07955 -8.87268 -8.73217 -8.26361 -6.81728 -6.05680 -3.27380 1.63062 2.18311 2.54710 2.59548 3.22436 3.40156 3.51098 3.56327 4.21775 4.44078 4.53813 4.54078 4.59381 4.67011 4.75783 4.84499 4.97051 5.02728 5.06901 5.17942 5.23948 5.39079 5.48140 5.49316 5.54381 5.57221 5.68601 5.73853 5.78048 5.83986 5.92857 5.97014 6.01590 6.10753 6.22995 6.33686 6.34882 6.38096 6.42086 6.45103 6.52324 6.56842 6.59480 6.72033 6.74114 6.83710 6.87981 6.91787 7.11415 7.44082 7.53594 7.91599 8.16935 8.35851 8.92240 9.71966 10.24373 11.08921 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.002286 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.994802 B =12242.981086 C =12461.595543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.063 4.063 3 C -0.124 4.124 4 C 0.140 3.860 5 H 0.114 0.886 6 N -0.708 5.708 7 C 0.518 3.482 8 O -0.548 6.548 9 C -0.154 4.154 10 C 0.151 3.849 11 N -0.372 5.372 12 C 0.055 3.945 13 C -0.278 4.278 14 C 0.042 3.958 15 N -0.296 5.296 16 C -0.168 4.168 17 H 0.098 0.902 18 C -0.088 4.088 19 C -0.132 4.132 20 C 0.144 3.856 21 N -0.579 5.579 22 C -0.266 4.266 23 H 0.092 0.908 24 C 0.041 3.959 25 N -0.884 5.884 26 Si 0.831 3.169 27 H -0.292 1.292 28 H -0.299 1.299 29 H -0.256 1.256 30 C 0.148 3.852 31 H 0.053 0.947 32 H 0.048 0.952 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.038 0.962 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.401 0.599 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.094 0.906 43 H 0.173 0.827 44 H 0.146 0.854 45 H 0.182 0.818 46 H 0.046 0.954 47 H 0.054 0.946 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.025 0.975 51 H 0.064 0.936 52 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.458 -3.683 23.362 23.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.064 4.064 3 C -0.180 4.180 4 C 0.036 3.964 5 H 0.132 0.868 6 N -0.358 5.358 7 C 0.303 3.697 8 O -0.426 6.426 9 C -0.195 4.195 10 C 0.029 3.971 11 N -0.154 5.154 12 C -0.092 4.092 13 C -0.308 4.308 14 C -0.144 4.144 15 N -0.117 5.117 16 C -0.189 4.189 17 H 0.116 0.884 18 C -0.126 4.126 19 C -0.172 4.172 20 C 0.019 3.981 21 N -0.301 5.301 22 C -0.393 4.393 23 H 0.109 0.891 24 C -0.161 4.161 25 N -0.524 5.524 26 Si 0.659 3.341 27 H -0.219 1.219 28 H -0.226 1.226 29 H -0.180 1.180 30 C 0.040 3.960 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.097 0.903 38 H 0.236 0.764 39 H 0.126 0.874 40 H 0.115 0.885 41 H 0.123 0.877 42 H 0.113 0.887 43 H 0.190 0.810 44 H 0.164 0.836 45 H 0.199 0.801 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.043 0.957 51 H 0.082 0.918 52 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.968 -4.445 21.877 22.345 hybrid contribution -0.713 -0.322 -0.102 0.789 sum -1.682 -4.767 21.776 22.355 Atomic orbital electron populations 1.21699 0.94383 1.01134 1.01854 1.21836 0.94776 0.95525 0.94262 1.21710 1.01744 0.93852 1.00730 1.22457 0.97267 0.96959 0.79750 0.86778 1.46023 1.69375 1.12438 1.07930 1.20277 0.76967 0.87243 0.85168 1.90709 1.50175 1.15094 1.86660 1.21895 1.05461 0.99664 0.92504 1.21435 1.03007 0.93928 0.78712 1.48828 1.16356 1.40304 1.09924 1.22621 0.98641 1.01168 0.86738 1.21524 0.98605 1.09174 1.01499 1.23910 0.98558 1.00097 0.91805 1.77366 1.04332 1.12037 1.17987 1.23408 0.97652 0.99729 0.98102 0.88399 1.21096 0.98450 0.96851 0.96215 1.21977 0.99057 1.00131 0.95998 1.21367 0.90283 0.91660 0.94820 1.44134 1.41125 1.19896 1.24970 1.18881 1.45017 0.86551 0.88872 0.89104 1.25376 0.98632 0.95449 0.96626 1.70077 1.42333 1.29429 1.10518 0.87667 0.79449 0.86548 0.80464 1.21906 1.22563 1.18047 1.21416 0.92740 0.95237 0.86642 0.92993 0.93313 0.93035 0.91656 0.94308 0.91295 0.90292 0.76357 0.87446 0.88465 0.87729 0.88742 0.80961 0.83618 0.80112 0.93528 0.92709 0.92964 0.92443 0.95683 0.91776 0.92851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.91 9.24 37.16 0.34 -1.57 16 2 C -0.06 -0.97 1.36 -159.15 -0.22 -1.18 16 3 C -0.12 -1.91 7.00 37.16 0.26 -1.65 16 4 C 0.14 2.00 3.54 -71.83 -0.25 1.75 16 5 H 0.11 1.76 7.42 -51.93 -0.39 1.38 16 6 N -0.71 -8.37 5.32 -57.65 -0.31 -8.67 16 7 C 0.52 6.14 7.83 -10.98 -0.09 6.05 16 8 O -0.55 -8.28 15.58 5.55 0.09 -8.19 16 9 C -0.15 -1.38 5.89 -27.88 -0.16 -1.54 16 10 C 0.15 1.34 5.80 -4.04 -0.02 1.31 16 11 N -0.37 -3.58 3.68 -61.37 -0.23 -3.80 16 12 C 0.05 0.43 11.45 -17.22 -0.20 0.23 16 13 C -0.28 -2.16 10.80 -40.01 -0.43 -2.59 16 14 C 0.04 0.37 12.03 -17.37 -0.21 0.17 16 15 N -0.30 -3.29 12.42 30.62 0.38 -2.91 16 16 C -0.17 -2.72 2.86 -95.83 -0.27 -2.99 16 17 H 0.10 1.71 5.91 -51.93 -0.31 1.40 16 18 C -0.09 -1.43 6.12 -27.07 -0.17 -1.60 16 19 C -0.13 -2.31 5.90 -26.42 -0.16 -2.47 16 20 C 0.14 3.01 4.39 -3.25 -0.01 3.00 16 21 N -0.58 -12.80 2.57 -169.43 -0.44 -13.24 16 22 C -0.27 -6.84 9.56 -15.06 -0.14 -6.99 16 23 H 0.09 2.41 5.05 -52.49 -0.26 2.15 16 24 C 0.04 1.12 4.93 -17.43 -0.09 1.03 16 25 N -0.88 -25.85 13.97 55.49 0.78 -25.07 16 26 Si 0.83 20.78 26.94 -169.99 -4.58 16.20 16 27 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 28 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 29 H -0.26 -6.05 4.71 56.52 0.27 -5.78 16 30 C 0.15 2.73 3.03 -72.14 -0.22 2.51 16 31 H 0.05 0.99 8.01 -51.93 -0.42 0.57 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.05 0.70 8.12 -51.93 -0.42 0.28 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.04 0.47 7.33 -51.93 -0.38 0.09 16 36 H 0.07 1.16 5.96 -51.93 -0.31 0.85 16 37 H 0.08 1.42 6.16 -51.93 -0.32 1.10 16 38 H 0.40 4.05 7.13 -40.82 -0.29 3.76 16 39 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.10 0.79 8.03 -51.93 -0.42 0.37 16 42 H 0.09 0.93 8.10 -51.93 -0.42 0.51 16 43 H 0.17 0.78 8.06 -52.48 -0.42 0.36 16 44 H 0.15 0.80 8.06 -52.48 -0.42 0.37 16 45 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 47 H 0.05 0.88 8.05 -51.93 -0.42 0.46 16 48 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 50 H 0.03 0.54 6.60 -51.93 -0.34 0.19 16 51 H 0.06 1.47 6.35 -51.93 -0.33 1.14 16 52 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 LS Contribution 398.81 15.07 6.01 6.01 Total: -1.00 -31.87 398.81 -8.86 -40.72 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.52 Total: 5.48 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -2.04 Total: -6.52 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.19 Total: -53.70 kcal Atomic # 8 Polarization: -8.28 SS G_CDS: 0.09 Total: -8.19 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.58 Total: 16.20 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.87 -8.86 -40.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030044.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.200 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds