Wall clock time and date at job start Wed Apr 1 2020 04:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 113.19488 * 2 1 4 4 C 1.55774 * 114.08043 * 132.67534 * 2 1 3 5 5 H 1.09003 * 114.13065 * 36.91190 * 4 2 1 6 6 N 1.46498 * 114.12619 * 264.52844 * 4 2 1 7 7 C 1.34775 * 119.99851 * 155.00062 * 6 4 2 8 8 O 1.21284 * 120.00298 * 0.02562 * 7 6 4 9 9 C 1.50706 * 119.99841 * 180.02562 * 7 6 4 10 10 C 1.53004 * 109.47191 * 180.02562 * 9 7 6 11 11 N 1.46494 * 109.47475 * 179.97438 * 10 9 7 12 12 C 1.34944 * 126.03717 * 124.70884 * 11 10 9 13 13 C 1.35316 * 107.74539 * 179.84227 * 12 11 10 14 14 C 1.39865 * 107.92127 * 0.42481 * 13 12 11 15 15 N 1.30838 * 108.20286 * 359.74249 * 14 13 12 16 16 C 1.50013 * 83.86083 * 150.81230 * 4 2 1 17 17 H 1.08998 * 112.50747 * 76.12692 * 16 4 2 18 18 C 1.51208 * 126.15834 * 218.52237 * 16 4 2 19 19 C 1.54088 * 106.19456 * 161.40907 * 18 16 4 20 20 C 1.52501 * 112.67890 * 304.56084 * 19 18 16 21 21 N 1.48408 * 111.86202 * 46.78459 * 20 19 18 22 22 C 1.36945 * 123.16400 * 128.14117 * 21 20 19 23 23 H 1.07997 * 120.00052 * 210.40096 * 22 21 20 24 24 C 1.38811 * 119.99966 * 30.40263 * 22 21 20 25 25 N 1.31615 * 119.99996 * 215.56338 * 24 22 21 26 26 Si 1.86798 * 119.99792 * 35.57091 * 24 22 21 27 27 H 1.48497 * 109.47404 * 84.57055 * 26 24 22 28 28 H 1.48501 * 109.47099 * 204.56546 * 26 24 22 29 29 H 1.48497 * 109.47459 * 324.56606 * 26 24 22 30 30 C 1.45376 * 113.66670 * 308.16382 * 21 20 19 31 31 H 1.08992 * 111.70116 * 300.47417 * 30 21 20 32 32 H 1.08995 * 109.47050 * 306.83263 * 1 2 3 33 33 H 1.08993 * 109.46993 * 186.82848 * 1 2 3 34 34 H 1.09007 * 109.47039 * 66.82704 * 1 2 3 35 35 H 1.09006 * 109.46760 * 66.19035 * 3 2 1 36 36 H 1.08996 * 109.46831 * 186.19161 * 3 2 1 37 37 H 1.09003 * 109.47099 * 306.19250 * 3 2 1 38 38 H 0.97007 * 120.00336 * 335.00974 * 6 4 2 39 39 H 1.09001 * 109.47180 * 300.00122 * 9 7 6 40 40 H 1.08996 * 109.47338 * 60.00089 * 9 7 6 41 41 H 1.09001 * 109.46911 * 299.99984 * 10 9 7 42 42 H 1.09004 * 109.46918 * 59.99515 * 10 9 7 43 43 H 1.08005 * 126.12875 * 0.02562 * 12 11 10 44 44 H 1.08009 * 126.04036 * 180.16621 * 13 12 11 45 45 H 1.07999 * 125.89869 * 179.75321 * 14 13 12 46 46 H 1.08999 * 110.10006 * 280.57646 * 18 16 4 47 47 H 1.08994 * 110.10213 * 42.24331 * 18 16 4 48 48 H 1.09000 * 108.84470 * 183.73561 * 19 18 16 49 49 H 1.09005 * 108.84380 * 65.38677 * 19 18 16 50 50 H 1.08995 * 109.00208 * 286.17559 * 20 19 18 51 51 H 1.08996 * 108.94109 * 167.35859 * 20 19 18 52 52 H 0.96999 * 119.99765 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1327 1.4063 0.0000 4 6 2.1656 -0.9640 1.0456 5 1 1.6213 -1.8990 1.1783 6 7 2.5263 -0.3208 2.3114 7 6 2.6003 -1.0515 3.4415 8 8 2.3686 -2.2416 3.4104 9 6 2.9708 -0.3898 4.7438 10 6 2.9834 -1.4347 5.8614 11 7 3.3441 -0.7916 7.1272 12 6 2.6244 -0.8252 8.2682 13 6 3.2987 -0.1154 9.2023 14 6 4.4658 0.3768 8.6092 15 7 4.4941 -0.0278 7.3653 16 6 3.2890 -1.0394 0.0542 17 1 3.9182 -0.1494 0.0682 18 6 4.0874 -2.2744 -0.2971 19 6 4.7654 -1.9778 -1.6487 20 6 3.7687 -1.5765 -2.7309 21 7 2.8027 -0.5608 -2.2434 22 6 2.5572 0.6155 -2.9001 23 1 2.2727 1.4958 -2.3429 24 6 2.6739 0.6764 -4.2820 25 7 3.1308 1.7690 -4.8563 26 14 2.1824 -0.7922 -5.3264 27 1 0.7201 -0.7511 -5.5815 28 1 2.9118 -0.7466 -6.6191 29 1 2.5247 -2.0466 -4.6090 30 6 2.1420 -0.9321 -1.0028 31 1 1.5851 -1.8633 -1.1058 32 1 -0.3633 0.6160 0.8225 33 1 -0.3633 -1.0203 0.1222 34 1 -0.3633 0.4044 -0.9448 35 1 1.8944 1.9037 0.9403 36 1 3.2148 1.3379 -0.1108 37 1 1.7180 1.9793 -0.8294 38 1 2.7119 0.6310 2.3363 39 1 3.9603 0.0586 4.6549 40 1 2.2407 0.3848 4.9784 41 1 1.9940 -1.8834 5.9504 42 1 3.7137 -2.2090 5.6266 43 1 1.6808 -1.3308 8.4112 44 1 2.9882 0.0464 10.2241 45 1 5.2145 0.9855 9.0943 46 1 4.8416 -2.4628 0.4669 47 1 3.4248 -3.1347 -0.3914 48 1 5.3015 -2.8683 -1.9766 49 1 5.4824 -1.1680 -1.5127 50 1 3.2205 -2.4613 -3.0542 51 1 4.3150 -1.1676 -3.5809 52 1 3.2127 1.8114 -5.8219 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264030044.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:23 Heat of formation + Delta-G solvation = 93.784318 kcal Electronic energy + Delta-G solvation = -31337.082748 eV Core-core repulsion = 27340.021423 eV Total energy + Delta-G solvation = -3997.061325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.47587 -41.97582 -40.27444 -37.11683 -35.21270 -34.83172 -34.49007 -32.70161 -31.41922 -30.90991 -30.39143 -28.60778 -27.49298 -26.70859 -25.23832 -23.76033 -22.52776 -21.93576 -21.50827 -21.20614 -20.98321 -19.76087 -18.73386 -18.38407 -17.43198 -17.14812 -16.94086 -16.76587 -15.95920 -15.68337 -15.54405 -15.30582 -15.17166 -14.97360 -14.91339 -14.66797 -14.29552 -14.24860 -14.07171 -13.89325 -13.66409 -13.55081 -13.39070 -13.19813 -13.10434 -12.77591 -12.69148 -12.67451 -12.47426 -12.37214 -12.03398 -11.94938 -11.74444 -11.52294 -11.51109 -11.35770 -11.17760 -10.91881 -10.68568 -10.35934 -10.18343 -9.85821 -9.47550 -8.64651 -8.16587 -5.32388 1.02859 1.36335 1.46040 1.50863 1.55128 1.60482 2.01507 2.27752 2.51501 2.99047 3.19759 3.42113 3.58001 3.66032 3.69818 3.83596 3.90965 4.03498 4.14002 4.15440 4.21140 4.31377 4.37196 4.42473 4.50217 4.56880 4.58902 4.64487 4.70822 4.75858 4.84676 4.89516 4.92928 4.96372 4.97897 5.04460 5.08992 5.13077 5.18067 5.21222 5.22367 5.27533 5.32984 5.46199 5.47672 5.57150 5.74936 5.80555 5.93932 6.16527 6.33059 6.57614 6.82508 6.97216 7.23247 7.71193 8.28793 9.01591 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.022927 B = 0.002286 C = 0.002246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.994802 B =12242.981086 C =12461.595543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.060 4.060 3 C -0.116 4.116 4 C 0.162 3.838 5 H 0.112 0.888 6 N -0.702 5.702 7 C 0.523 3.477 8 O -0.578 6.578 9 C -0.140 4.140 10 C 0.152 3.848 11 N -0.382 5.382 12 C 0.053 3.947 13 C -0.286 4.286 14 C 0.035 3.965 15 N -0.339 5.339 16 C -0.154 4.154 17 H 0.087 0.913 18 C -0.085 4.085 19 C -0.124 4.124 20 C 0.140 3.860 21 N -0.590 5.590 22 C -0.238 4.238 23 H 0.078 0.922 24 C -0.015 4.015 25 N -0.932 5.932 26 Si 0.879 3.121 27 H -0.302 1.302 28 H -0.309 1.309 29 H -0.236 1.236 30 C 0.125 3.875 31 H 0.054 0.946 32 H 0.071 0.929 33 H 0.059 0.941 34 H 0.043 0.957 35 H 0.075 0.925 36 H 0.052 0.948 37 H 0.048 0.952 38 H 0.412 0.588 39 H 0.106 0.894 40 H 0.116 0.884 41 H 0.119 0.881 42 H 0.079 0.921 43 H 0.204 0.796 44 H 0.167 0.833 45 H 0.202 0.798 46 H 0.061 0.939 47 H 0.060 0.940 48 H 0.075 0.925 49 H 0.049 0.951 50 H 0.025 0.975 51 H 0.039 0.961 52 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.125 -4.848 26.715 27.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.062 4.062 3 C -0.173 4.173 4 C 0.056 3.944 5 H 0.129 0.871 6 N -0.352 5.352 7 C 0.310 3.690 8 O -0.458 6.458 9 C -0.180 4.180 10 C 0.031 3.969 11 N -0.164 5.164 12 C -0.093 4.093 13 C -0.315 4.315 14 C -0.150 4.150 15 N -0.161 5.161 16 C -0.175 4.175 17 H 0.105 0.895 18 C -0.123 4.123 19 C -0.163 4.163 20 C 0.015 3.985 21 N -0.313 5.313 22 C -0.367 4.367 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.576 5.576 26 Si 0.708 3.292 27 H -0.231 1.231 28 H -0.237 1.237 29 H -0.160 1.160 30 C 0.017 3.983 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.078 0.922 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.249 0.751 39 H 0.124 0.876 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.098 0.902 43 H 0.221 0.779 44 H 0.185 0.815 45 H 0.219 0.781 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.094 0.906 49 H 0.068 0.932 50 H 0.043 0.957 51 H 0.057 0.943 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.632 -5.637 25.279 25.951 hybrid contribution -0.506 0.042 -0.988 1.111 sum -2.138 -5.595 24.291 25.019 Atomic orbital electron populations 1.21664 0.93290 1.02068 1.01682 1.21839 0.95673 0.95152 0.93488 1.21587 1.00377 0.93889 1.01434 1.22011 0.95573 0.96414 0.80368 0.87064 1.45889 1.69251 1.12979 1.07120 1.20680 0.75851 0.86749 0.85740 1.90704 1.51457 1.16547 1.87124 1.21777 1.05766 0.99760 0.90732 1.21406 1.03313 0.93494 0.78732 1.48883 1.16438 1.40610 1.10496 1.23226 0.99427 1.00684 0.85983 1.21882 0.98190 1.08908 1.02569 1.24413 0.99408 0.99782 0.91437 1.77312 1.05731 1.13690 1.19375 1.23316 0.97063 0.99436 0.97718 0.89524 1.21074 0.98773 0.96812 0.95592 1.21860 0.97951 1.00821 0.95680 1.21388 0.90602 0.90978 0.95503 1.44255 1.42209 1.19201 1.25652 1.18993 1.41434 0.87591 0.88690 0.90450 1.25821 1.00355 0.97109 0.97889 1.70159 1.45737 1.31449 1.10272 0.86877 0.78072 0.85263 0.79021 1.23086 1.23711 1.15991 1.21759 0.94624 0.96398 0.85472 0.92855 0.90992 0.92156 0.93736 0.90610 0.92894 0.93334 0.75109 0.87589 0.86591 0.86244 0.90235 0.77933 0.81512 0.78111 0.92081 0.92163 0.90603 0.93218 0.95669 0.94261 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.46 9.24 71.98 0.67 -2.80 16 2 C -0.06 -1.76 1.36 -55.19 -0.08 -1.83 16 3 C -0.12 -3.46 7.00 71.98 0.50 -2.96 16 4 C 0.16 4.23 3.54 42.47 0.15 4.38 16 5 H 0.11 3.12 7.42 -2.39 -0.02 3.10 16 6 N -0.70 -14.56 5.32 -454.71 -2.42 -16.98 16 7 C 0.52 10.95 7.83 87.66 0.69 11.64 16 8 O -0.58 -16.05 15.58 -3.04 -0.05 -16.10 16 9 C -0.14 -2.12 5.89 29.85 0.18 -1.95 16 10 C 0.15 2.37 5.80 86.38 0.50 2.87 16 11 N -0.38 -6.55 3.68 -348.06 -1.28 -7.83 16 12 C 0.05 0.67 11.45 83.54 0.96 1.63 16 13 C -0.29 -3.71 10.80 21.99 0.24 -3.47 16 14 C 0.04 0.56 12.03 85.23 1.02 1.58 16 15 N -0.34 -7.07 12.42 -57.03 -0.71 -7.78 16 16 C -0.15 -4.72 2.86 -14.17 -0.04 -4.76 16 17 H 0.09 2.91 5.91 -2.39 -0.01 2.89 16 18 C -0.08 -2.54 6.12 30.38 0.19 -2.36 16 19 C -0.12 -4.13 5.90 30.80 0.18 -3.95 16 20 C 0.14 5.79 4.39 85.85 0.38 6.17 16 21 N -0.59 -26.07 2.57 -689.94 -1.78 -27.84 16 22 C -0.24 -12.51 9.56 84.03 0.80 -11.70 16 23 H 0.08 4.24 5.05 -2.91 -0.01 4.23 16 24 C -0.01 -0.84 4.93 84.86 0.42 -0.42 16 25 N -0.93 -56.68 13.97 21.65 0.30 -56.38 16 26 Si 0.88 44.06 26.94 68.60 1.85 45.90 16 27 H -0.30 -15.52 7.11 99.48 0.71 -14.82 16 28 H -0.31 -15.94 7.11 99.48 0.71 -15.24 16 29 H -0.24 -10.88 4.71 99.48 0.47 -10.42 16 30 C 0.12 4.46 3.03 42.87 0.13 4.59 16 31 H 0.05 1.94 8.01 -2.39 -0.02 1.92 16 32 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.06 1.50 8.12 -2.39 -0.02 1.48 16 34 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.08 1.66 7.33 -2.38 -0.02 1.65 16 36 H 0.05 1.74 5.96 -2.39 -0.01 1.73 16 37 H 0.05 1.76 6.16 -2.39 -0.01 1.74 16 38 H 0.41 6.98 7.13 -92.70 -0.66 6.32 16 39 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 41 H 0.12 1.47 8.03 -2.39 -0.02 1.45 16 42 H 0.08 1.47 8.10 -2.38 -0.02 1.45 16 43 H 0.20 1.10 8.06 -2.91 -0.02 1.07 16 44 H 0.17 1.32 8.06 -2.91 -0.02 1.29 16 45 H 0.20 2.00 8.06 -2.91 -0.02 1.98 16 46 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.06 1.77 8.05 -2.39 -0.02 1.75 16 48 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.05 1.73 8.14 -2.38 -0.02 1.71 16 50 H 0.03 1.05 6.60 -2.39 -0.02 1.03 16 51 H 0.04 1.80 6.35 -2.39 -0.02 1.79 16 52 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -70.90 398.81 2.82 -68.08 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.02 Total: 22.26 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: 6.88 Total: -3.34 kcal Atomic # 7 Polarization: -110.92 SS G_CDS: -5.88 Total: -116.80 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: -0.05 Total: -16.10 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 1.85 Total: 45.90 kcal Total: -70.90 2.82 -68.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030044.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.865 kcal (2) G-P(sol) polarization free energy of solvation -70.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds