Wall clock time and date at job start Wed Apr 1 2020 04:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 112.97491 * 2 1 4 4 C 1.53886 * 113.68371 * 131.48443 * 2 1 3 5 5 H 1.08997 * 113.63802 * 333.73458 * 4 2 1 6 6 N 1.46495 * 113.63782 * 202.84454 * 4 2 1 7 7 C 1.34776 * 120.00356 * 154.99915 * 6 4 2 8 8 O 1.21284 * 119.99338 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00183 * 179.97438 * 7 6 4 10 10 C 1.53003 * 109.46826 * 180.02562 * 9 7 6 11 11 N 1.46505 * 109.46994 * 180.02562 * 10 9 7 12 12 C 1.34948 * 126.03786 * 124.71835 * 11 10 9 13 13 C 1.35320 * 107.74223 * 179.83922 * 12 11 10 14 14 C 1.39865 * 107.92083 * 0.41940 * 13 12 11 15 15 N 1.30832 * 108.20463 * 359.74184 * 14 13 12 16 16 C 1.54155 * 86.93241 * 88.33296 * 4 2 1 17 17 H 1.09000 * 114.24197 * 141.19748 * 16 4 2 18 18 C 1.53062 * 111.68763 * 271.97330 * 16 4 2 19 19 C 1.53019 * 109.40794 * 146.40549 * 18 16 4 20 20 C 1.52939 * 108.93463 * 295.35610 * 19 18 16 21 21 N 1.44111 * 109.36535 * 57.23367 * 20 19 18 22 22 C 1.36936 * 117.16055 * 141.11729 * 21 20 19 23 23 H 1.07998 * 120.00045 * 207.66666 * 22 21 20 24 24 C 1.38811 * 120.00195 * 27.67433 * 22 21 20 25 25 N 1.31618 * 120.00228 * 16.94788 * 24 22 21 26 26 Si 1.86798 * 119.99999 * 196.95957 * 24 22 21 27 27 H 1.48496 * 109.47593 * 89.99424 * 26 24 22 28 28 H 1.48501 * 109.46860 * 209.99593 * 26 24 22 29 29 H 1.48501 * 109.47141 * 329.99190 * 26 24 22 30 30 C 1.45090 * 124.34857 * 320.22434 * 21 20 19 31 31 H 1.08996 * 112.25962 * 156.67179 * 30 21 20 32 32 H 1.08998 * 109.47097 * 276.07734 * 1 2 3 33 33 H 1.08997 * 109.46392 * 36.07236 * 1 2 3 34 34 H 1.08997 * 109.47473 * 156.06952 * 1 2 3 35 35 H 1.09002 * 109.47130 * 171.97424 * 3 2 1 36 36 H 1.09002 * 109.46971 * 291.98112 * 3 2 1 37 37 H 1.09001 * 109.46718 * 51.97851 * 3 2 1 38 38 H 0.97004 * 119.99989 * 334.99734 * 6 4 2 39 39 H 1.08998 * 109.47284 * 60.00467 * 9 7 6 40 40 H 1.09001 * 109.47345 * 300.00214 * 9 7 6 41 41 H 1.09006 * 109.47153 * 60.00147 * 10 9 7 42 42 H 1.09001 * 109.47280 * 300.00189 * 10 9 7 43 43 H 1.08002 * 126.12525 * 359.97438 * 12 11 10 44 44 H 1.08002 * 126.03448 * 180.16151 * 13 12 11 45 45 H 1.08002 * 125.89818 * 179.75817 * 14 13 12 46 46 H 1.09001 * 109.48317 * 266.38711 * 18 16 4 47 47 H 1.09003 * 109.47927 * 26.42636 * 18 16 4 48 48 H 1.09005 * 109.56202 * 55.19063 * 19 18 16 49 49 H 1.09004 * 109.56173 * 175.40291 * 19 18 16 50 50 H 1.09001 * 109.40330 * 177.47255 * 20 19 18 51 51 H 1.09006 * 109.39462 * 297.30116 * 20 19 18 52 52 H 0.96996 * 120.00518 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1272 1.4086 0.0000 4 6 2.1481 -0.9335 1.0557 5 1 1.5037 -1.1059 1.9177 6 7 3.5167 -0.5704 1.4317 7 6 4.0022 -0.9290 2.6367 8 8 3.3062 -1.5527 3.4097 9 6 5.4102 -0.5560 3.0231 10 6 5.7088 -1.0797 4.4294 11 7 7.0774 -0.7165 4.8054 12 6 7.4421 -0.0306 5.9088 13 6 8.7894 0.0944 5.8901 14 6 9.2633 -0.5284 4.7309 15 7 8.2380 -1.0148 4.0799 16 6 2.0740 -2.0481 -0.0067 17 1 2.9321 -2.7201 -0.0109 18 6 0.7260 -2.7725 0.0266 19 6 0.3433 -3.1998 -1.3919 20 6 0.1264 -1.9493 -2.2454 21 7 1.3219 -1.1449 -2.2268 22 6 1.6825 -0.5339 -3.3981 23 1 2.7210 -0.3109 -3.5933 24 6 0.7133 -0.2010 -4.3343 25 7 -0.5542 -0.1567 -3.9822 26 14 1.2077 0.1837 -6.0941 27 1 1.1982 -1.0663 -6.8956 28 1 0.2460 1.1532 -6.6777 29 1 2.5718 0.7704 -6.1080 30 6 2.1462 -0.9305 -1.0522 31 1 3.1696 -0.6582 -1.3101 32 1 -0.3633 0.1088 1.0219 33 1 -0.3632 0.8307 -0.6051 34 1 -0.3634 -0.9393 -0.4168 35 1 3.2059 1.3460 0.1435 36 1 1.9148 1.8933 -0.9530 37 1 1.6862 1.9902 0.8096 38 1 4.0735 -0.0719 0.8132 39 1 5.5156 0.5288 3.0091 40 1 6.1107 -0.9983 2.3148 41 1 5.6035 -2.1645 4.4431 42 1 5.0083 -0.6377 5.1380 43 1 6.7779 0.3486 6.6714 44 1 9.3918 0.5912 6.6363 45 1 10.2972 -0.5963 4.4260 46 1 0.8025 -3.6537 0.6636 47 1 -0.0370 -2.1024 0.4228 48 1 1.1455 -3.8000 -1.8213 49 1 -0.5749 -3.7864 -1.3612 50 1 -0.1028 -2.2450 -3.2692 51 1 -0.7058 -1.3740 -1.8397 52 1 -1.2315 0.0755 -4.6365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264030045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:27 Heat of formation + Delta-G solvation = 101.692267 kcal Electronic energy + Delta-G solvation = -31500.194964 eV Core-core repulsion = 27503.476554 eV Total energy + Delta-G solvation = -3996.718410 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.37656 -40.96719 -39.16419 -35.53877 -34.46989 -33.31775 -32.62818 -30.79140 -30.40016 -29.97623 -29.56562 -26.86854 -25.66431 -25.19862 -23.94055 -22.50260 -21.38817 -21.24884 -20.84794 -20.22821 -19.33419 -17.88273 -17.54990 -16.90567 -16.48395 -16.06343 -15.92921 -15.06509 -14.81433 -14.50785 -14.45265 -14.29348 -13.88413 -13.75350 -13.43340 -13.25143 -13.10808 -12.98364 -12.71508 -12.52234 -12.46637 -12.17779 -12.11624 -11.68216 -11.64298 -11.37660 -11.17930 -11.03751 -10.88645 -10.86655 -10.77364 -10.53749 -10.22154 -10.02997 -10.00494 -9.74594 -9.65112 -9.56576 -9.39372 -9.06084 -8.85295 -8.64276 -8.34957 -6.64780 -5.79469 -3.26328 1.65090 2.20118 2.56969 2.61565 3.22244 3.34797 3.42751 3.42872 4.23912 4.46382 4.47073 4.56446 4.69406 4.85596 4.95304 5.05289 5.06640 5.21086 5.27875 5.36097 5.41230 5.48138 5.50343 5.56542 5.60847 5.70578 5.75792 5.81992 5.93081 6.00538 6.10307 6.16650 6.22951 6.29456 6.40084 6.42304 6.45270 6.55372 6.57021 6.61622 6.73981 6.74724 6.78202 6.81720 6.95275 7.11172 7.19854 7.41938 7.46147 7.56638 7.74786 7.83072 8.20445 8.45880 9.25189 9.91253 10.30801 11.24323 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.002392 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.659599 B =11702.813647 C =12425.880923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.112 4.112 3 C -0.125 4.125 4 C 0.122 3.878 5 H 0.095 0.905 6 N -0.701 5.701 7 C 0.519 3.481 8 O -0.547 6.547 9 C -0.154 4.154 10 C 0.151 3.849 11 N -0.372 5.372 12 C 0.055 3.945 13 C -0.278 4.278 14 C 0.042 3.958 15 N -0.296 5.296 16 C -0.129 4.129 17 H 0.068 0.932 18 C -0.106 4.106 19 C -0.145 4.145 20 C 0.181 3.819 21 N -0.568 5.568 22 C -0.267 4.267 23 H 0.063 0.937 24 C 0.009 3.991 25 N -0.898 5.898 26 Si 0.899 3.101 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.280 1.280 30 C 0.190 3.810 31 H 0.070 0.930 32 H 0.032 0.968 33 H 0.061 0.939 34 H 0.096 0.904 35 H 0.040 0.960 36 H 0.064 0.936 37 H 0.041 0.959 38 H 0.402 0.598 39 H 0.098 0.902 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.173 0.827 44 H 0.146 0.854 45 H 0.182 0.818 46 H 0.046 0.954 47 H 0.078 0.922 48 H 0.052 0.948 49 H 0.051 0.949 50 H 0.066 0.934 51 H 0.039 0.961 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.434 0.729 17.016 20.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.116 4.116 3 C -0.182 4.182 4 C 0.017 3.983 5 H 0.113 0.887 6 N -0.351 5.351 7 C 0.304 3.696 8 O -0.425 6.425 9 C -0.195 4.195 10 C 0.029 3.971 11 N -0.154 5.154 12 C -0.092 4.092 13 C -0.308 4.308 14 C -0.144 4.144 15 N -0.117 5.117 16 C -0.150 4.150 17 H 0.087 0.913 18 C -0.143 4.143 19 C -0.184 4.184 20 C 0.056 3.944 21 N -0.285 5.285 22 C -0.397 4.397 23 H 0.081 0.919 24 C -0.190 4.190 25 N -0.542 5.542 26 Si 0.729 3.271 27 H -0.215 1.215 28 H -0.219 1.219 29 H -0.205 1.205 30 C 0.079 3.921 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.114 0.886 35 H 0.059 0.941 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.238 0.762 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.123 0.877 43 H 0.190 0.810 44 H 0.164 0.836 45 H 0.199 0.801 46 H 0.065 0.935 47 H 0.096 0.904 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.084 0.916 51 H 0.057 0.943 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 10.232 -0.377 16.378 19.315 hybrid contribution 0.845 1.103 -0.494 1.475 sum 11.077 0.726 15.883 19.378 Atomic orbital electron populations 1.22003 0.92573 1.05233 0.99241 1.22989 0.96966 0.94650 0.97020 1.21570 0.98555 0.96427 1.01669 1.22382 0.82005 0.97161 0.96800 0.88659 1.45779 1.15525 1.56905 1.16925 1.20258 0.88253 0.79199 0.81846 1.90709 1.60221 1.40486 1.51131 1.21882 0.95488 1.03808 0.98276 1.21436 0.76777 1.02481 0.96367 1.48830 1.06586 1.42694 1.17302 1.22623 0.96995 0.97379 0.92155 1.21521 0.93845 1.12656 1.02783 1.23908 0.98701 0.97644 0.94120 1.77365 0.90964 1.23682 1.19705 1.23214 0.98112 0.96531 0.97116 0.91324 1.21524 0.96037 0.99090 0.97683 1.22102 0.99914 1.00474 0.95940 1.20336 0.88405 0.87475 0.98168 1.42867 1.27203 1.52991 1.05438 1.19237 0.92012 1.34387 0.94054 0.91935 1.25011 0.95594 0.99260 0.99112 1.70072 0.99704 1.51434 1.32965 0.86353 0.77642 0.77692 0.85407 1.21491 1.21854 1.20545 1.21277 0.94217 0.91254 0.85349 0.91190 0.94919 0.92037 0.88620 0.94095 0.91670 0.93974 0.76214 0.88400 0.87378 0.88714 0.87719 0.80958 0.83620 0.80114 0.93529 0.90417 0.92927 0.92983 0.91593 0.94338 0.93673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.47 7.38 37.16 0.27 -2.19 16 2 C -0.11 -1.92 1.34 -153.85 -0.21 -2.13 16 3 C -0.12 -1.97 8.90 37.16 0.33 -1.64 16 4 C 0.12 1.90 3.34 -66.88 -0.22 1.68 16 5 H 0.10 1.60 7.35 -51.93 -0.38 1.22 16 6 N -0.70 -9.10 4.71 -52.79 -0.25 -9.35 16 7 C 0.52 6.57 7.83 -10.99 -0.09 6.48 16 8 O -0.55 -8.68 15.58 5.55 0.09 -8.60 16 9 C -0.15 -1.46 5.88 -27.88 -0.16 -1.63 16 10 C 0.15 1.40 5.80 -4.04 -0.02 1.38 16 11 N -0.37 -3.71 3.68 -61.36 -0.23 -3.94 16 12 C 0.05 0.45 11.45 -17.22 -0.20 0.25 16 13 C -0.28 -2.24 10.80 -40.01 -0.43 -2.68 16 14 C 0.04 0.39 12.02 -17.37 -0.21 0.18 16 15 N -0.30 -3.40 12.42 30.62 0.38 -3.02 16 16 C -0.13 -2.20 4.12 -89.88 -0.37 -2.57 16 17 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 18 C -0.11 -1.80 5.18 -26.69 -0.14 -1.94 16 19 C -0.15 -2.71 6.03 -26.75 -0.16 -2.87 16 20 C 0.18 4.09 3.93 -5.34 -0.02 4.07 16 21 N -0.57 -13.03 2.61 -168.23 -0.44 -13.47 16 22 C -0.27 -6.87 9.40 -15.06 -0.14 -7.01 16 23 H 0.06 1.61 7.87 -52.49 -0.41 1.20 16 24 C 0.01 0.25 4.76 -17.43 -0.08 0.17 16 25 N -0.90 -24.56 11.08 55.49 0.61 -23.94 16 26 Si 0.90 21.05 29.59 -169.99 -5.03 16.02 16 27 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 30 C 0.19 3.63 3.40 -68.39 -0.23 3.40 16 31 H 0.07 1.34 7.90 -51.93 -0.41 0.93 16 32 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 1.27 8.04 -51.93 -0.42 0.85 16 34 H 0.10 1.87 1.92 -51.93 -0.10 1.77 16 35 H 0.04 0.55 6.02 -51.93 -0.31 0.23 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.40 4.59 6.83 -40.82 -0.28 4.31 16 39 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.11 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 42 H 0.10 0.84 8.03 -51.93 -0.42 0.42 16 43 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 44 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 45 H 0.18 1.12 8.06 -52.49 -0.42 0.69 16 46 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.08 1.32 4.71 -51.93 -0.24 1.08 16 48 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 49 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 50 H 0.07 1.68 6.56 -51.93 -0.34 1.34 16 51 H 0.04 0.93 5.52 -51.93 -0.29 0.64 16 52 H 0.25 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 397.15 15.07 5.98 5.98 Total: -1.00 -30.48 397.15 -9.19 -39.67 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -8.23 Total: 7.68 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -2.08 Total: -7.05 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.08 Total: -53.71 kcal Atomic # 8 Polarization: -8.68 SS G_CDS: 0.09 Total: -8.60 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.48 -9.19 -39.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.365 kcal (2) G-P(sol) polarization free energy of solvation -30.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds