Wall clock time and date at job start Wed Apr 1 2020 04:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 112.97491 * 2 1 4 4 C 1.53886 * 113.68371 * 131.48443 * 2 1 3 5 5 H 1.08997 * 113.63802 * 333.73458 * 4 2 1 6 6 N 1.46495 * 113.63782 * 202.84454 * 4 2 1 7 7 C 1.34776 * 120.00356 * 154.99915 * 6 4 2 8 8 O 1.21284 * 119.99338 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00183 * 179.97438 * 7 6 4 10 10 C 1.53003 * 109.46826 * 180.02562 * 9 7 6 11 11 N 1.46505 * 109.46994 * 180.02562 * 10 9 7 12 12 C 1.34948 * 126.03786 * 124.71835 * 11 10 9 13 13 C 1.35320 * 107.74223 * 179.83922 * 12 11 10 14 14 C 1.39865 * 107.92083 * 0.41940 * 13 12 11 15 15 N 1.30832 * 108.20463 * 359.74184 * 14 13 12 16 16 C 1.54155 * 86.93241 * 88.33296 * 4 2 1 17 17 H 1.09000 * 114.24197 * 141.19748 * 16 4 2 18 18 C 1.53062 * 111.68763 * 271.97330 * 16 4 2 19 19 C 1.53019 * 109.40794 * 146.40549 * 18 16 4 20 20 C 1.52939 * 108.93463 * 295.35610 * 19 18 16 21 21 N 1.44111 * 109.36535 * 57.23367 * 20 19 18 22 22 C 1.36936 * 117.16055 * 141.11729 * 21 20 19 23 23 H 1.07998 * 120.00045 * 207.66666 * 22 21 20 24 24 C 1.38811 * 120.00195 * 27.67433 * 22 21 20 25 25 N 1.31618 * 120.00228 * 16.94788 * 24 22 21 26 26 Si 1.86798 * 119.99999 * 196.95957 * 24 22 21 27 27 H 1.48496 * 109.47593 * 89.99424 * 26 24 22 28 28 H 1.48501 * 109.46860 * 209.99593 * 26 24 22 29 29 H 1.48501 * 109.47141 * 329.99190 * 26 24 22 30 30 C 1.45090 * 124.34857 * 320.22434 * 21 20 19 31 31 H 1.08996 * 112.25962 * 156.67179 * 30 21 20 32 32 H 1.08998 * 109.47097 * 276.07734 * 1 2 3 33 33 H 1.08997 * 109.46392 * 36.07236 * 1 2 3 34 34 H 1.08997 * 109.47473 * 156.06952 * 1 2 3 35 35 H 1.09002 * 109.47130 * 171.97424 * 3 2 1 36 36 H 1.09002 * 109.46971 * 291.98112 * 3 2 1 37 37 H 1.09001 * 109.46718 * 51.97851 * 3 2 1 38 38 H 0.97004 * 119.99989 * 334.99734 * 6 4 2 39 39 H 1.08998 * 109.47284 * 60.00467 * 9 7 6 40 40 H 1.09001 * 109.47345 * 300.00214 * 9 7 6 41 41 H 1.09006 * 109.47153 * 60.00147 * 10 9 7 42 42 H 1.09001 * 109.47280 * 300.00189 * 10 9 7 43 43 H 1.08002 * 126.12525 * 359.97438 * 12 11 10 44 44 H 1.08002 * 126.03448 * 180.16151 * 13 12 11 45 45 H 1.08002 * 125.89818 * 179.75817 * 14 13 12 46 46 H 1.09001 * 109.48317 * 266.38711 * 18 16 4 47 47 H 1.09003 * 109.47927 * 26.42636 * 18 16 4 48 48 H 1.09005 * 109.56202 * 55.19063 * 19 18 16 49 49 H 1.09004 * 109.56173 * 175.40291 * 19 18 16 50 50 H 1.09001 * 109.40330 * 177.47255 * 20 19 18 51 51 H 1.09006 * 109.39462 * 297.30116 * 20 19 18 52 52 H 0.96996 * 120.00518 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1272 1.4086 0.0000 4 6 2.1481 -0.9335 1.0557 5 1 1.5037 -1.1059 1.9177 6 7 3.5167 -0.5704 1.4317 7 6 4.0022 -0.9290 2.6367 8 8 3.3062 -1.5527 3.4097 9 6 5.4102 -0.5560 3.0231 10 6 5.7088 -1.0797 4.4294 11 7 7.0774 -0.7165 4.8054 12 6 7.4421 -0.0306 5.9088 13 6 8.7894 0.0944 5.8901 14 6 9.2633 -0.5284 4.7309 15 7 8.2380 -1.0148 4.0799 16 6 2.0740 -2.0481 -0.0067 17 1 2.9321 -2.7201 -0.0109 18 6 0.7260 -2.7725 0.0266 19 6 0.3433 -3.1998 -1.3919 20 6 0.1264 -1.9493 -2.2454 21 7 1.3219 -1.1449 -2.2268 22 6 1.6825 -0.5339 -3.3981 23 1 2.7210 -0.3109 -3.5933 24 6 0.7133 -0.2010 -4.3343 25 7 -0.5542 -0.1567 -3.9822 26 14 1.2077 0.1837 -6.0941 27 1 1.1982 -1.0663 -6.8956 28 1 0.2460 1.1532 -6.6777 29 1 2.5718 0.7704 -6.1080 30 6 2.1462 -0.9305 -1.0522 31 1 3.1696 -0.6582 -1.3101 32 1 -0.3633 0.1088 1.0219 33 1 -0.3632 0.8307 -0.6051 34 1 -0.3634 -0.9393 -0.4168 35 1 3.2059 1.3460 0.1435 36 1 1.9148 1.8933 -0.9530 37 1 1.6862 1.9902 0.8096 38 1 4.0735 -0.0719 0.8132 39 1 5.5156 0.5288 3.0091 40 1 6.1107 -0.9983 2.3148 41 1 5.6035 -2.1645 4.4431 42 1 5.0083 -0.6377 5.1380 43 1 6.7779 0.3486 6.6714 44 1 9.3918 0.5912 6.6363 45 1 10.2972 -0.5963 4.4260 46 1 0.8025 -3.6537 0.6636 47 1 -0.0370 -2.1024 0.4228 48 1 1.1455 -3.8000 -1.8213 49 1 -0.5749 -3.7864 -1.3612 50 1 -0.1028 -2.2450 -3.2692 51 1 -0.7058 -1.3740 -1.8397 52 1 -1.2315 0.0755 -4.6365 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264030045.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:26 Heat of formation + Delta-G solvation = 84.445260 kcal Electronic energy + Delta-G solvation = -31500.942851 eV Core-core repulsion = 27503.476554 eV Total energy + Delta-G solvation = -3997.466297 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.39119 -41.97860 -40.30505 -37.11940 -35.22932 -34.84263 -34.00139 -32.30012 -31.55761 -31.21376 -30.38689 -28.28403 -27.16852 -26.62888 -25.07649 -24.10649 -22.72923 -21.98328 -21.73014 -21.13497 -20.80042 -19.13528 -18.71948 -18.52460 -17.42393 -17.23505 -16.90910 -16.58213 -16.16904 -15.80849 -15.58039 -15.47047 -15.14182 -15.00108 -14.61962 -14.43193 -14.17509 -14.08275 -13.90402 -13.72880 -13.58264 -13.53507 -13.25957 -13.13359 -12.94560 -12.84566 -12.74688 -12.56648 -12.44477 -12.38138 -12.07393 -11.99247 -11.57192 -11.53023 -11.44411 -11.13763 -10.99156 -10.96226 -10.60957 -10.36762 -10.31525 -9.86654 -9.48388 -8.53050 -7.78106 -5.26866 1.01975 1.45783 1.48807 1.52861 1.55232 1.56224 2.00898 2.21479 2.53663 3.31791 3.54542 3.56414 3.63456 3.70386 3.79374 3.90373 3.98879 4.05563 4.12697 4.19665 4.29483 4.35358 4.42110 4.48743 4.55463 4.60937 4.69307 4.73722 4.75932 4.80804 4.88010 4.91323 4.95498 4.96144 5.02138 5.10746 5.12710 5.16819 5.20612 5.31327 5.31510 5.40159 5.51414 5.56953 5.64035 5.72055 5.77351 5.79854 6.00624 6.15498 6.46071 6.51928 6.81764 7.18593 7.27056 8.07107 8.37603 9.21896 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017146 B = 0.002392 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.659599 B =11702.813647 C =12425.880923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.109 4.109 3 C -0.120 4.120 4 C 0.145 3.855 5 H 0.092 0.908 6 N -0.698 5.698 7 C 0.524 3.476 8 O -0.577 6.577 9 C -0.139 4.139 10 C 0.153 3.847 11 N -0.382 5.382 12 C 0.053 3.947 13 C -0.286 4.286 14 C 0.035 3.965 15 N -0.339 5.339 16 C -0.124 4.124 17 H 0.071 0.929 18 C -0.102 4.102 19 C -0.135 4.135 20 C 0.191 3.809 21 N -0.579 5.579 22 C -0.269 4.269 23 H 0.060 0.940 24 C -0.039 4.039 25 N -0.924 5.924 26 Si 0.954 3.046 27 H -0.290 1.290 28 H -0.298 1.298 29 H -0.272 1.272 30 C 0.174 3.826 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.029 0.971 34 H 0.084 0.916 35 H 0.066 0.934 36 H 0.035 0.965 37 H 0.055 0.945 38 H 0.411 0.589 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.204 0.796 44 H 0.168 0.832 45 H 0.203 0.797 46 H 0.067 0.933 47 H 0.078 0.922 48 H 0.048 0.952 49 H 0.069 0.931 50 H 0.027 0.973 51 H 0.020 0.980 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.258 1.061 19.276 23.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 C -0.177 4.177 4 C 0.038 3.962 5 H 0.110 0.890 6 N -0.348 5.348 7 C 0.311 3.689 8 O -0.457 6.457 9 C -0.180 4.180 10 C 0.031 3.969 11 N -0.165 5.165 12 C -0.093 4.093 13 C -0.315 4.315 14 C -0.150 4.150 15 N -0.161 5.161 16 C -0.145 4.145 17 H 0.090 0.910 18 C -0.140 4.140 19 C -0.174 4.174 20 C 0.066 3.934 21 N -0.297 5.297 22 C -0.400 4.400 23 H 0.078 0.922 24 C -0.236 4.236 25 N -0.569 5.569 26 Si 0.784 3.216 27 H -0.218 1.218 28 H -0.225 1.225 29 H -0.197 1.197 30 C 0.066 3.934 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.085 0.915 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.249 0.751 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.099 0.901 42 H 0.137 0.863 43 H 0.221 0.779 44 H 0.185 0.815 45 H 0.219 0.781 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.087 0.913 50 H 0.045 0.955 51 H 0.038 0.962 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 12.107 -0.038 18.657 22.241 hybrid contribution 0.337 0.995 -1.139 1.550 sum 12.444 0.957 17.518 21.509 Atomic orbital electron populations 1.21913 0.93614 1.03254 0.99806 1.22831 0.96185 0.95513 0.96756 1.21518 1.00304 0.95321 1.00595 1.21976 0.83267 0.95248 0.95693 0.88985 1.45707 1.14578 1.57087 1.17464 1.20700 0.89046 0.78125 0.80997 1.90703 1.61291 1.41744 1.51922 1.21771 0.92914 1.04836 0.98432 1.21401 0.77111 1.01814 0.96567 1.48878 1.06313 1.43362 1.17904 1.23231 0.97733 0.96372 0.91982 1.21882 0.94215 1.12531 1.02874 1.24417 0.99370 0.96897 0.94332 1.77311 0.91977 1.25484 1.21349 1.23173 0.98333 0.96435 0.96592 0.91015 1.21496 0.95917 0.99944 0.96600 1.21959 1.00690 0.98496 0.96277 1.20064 0.87957 0.88846 0.96549 1.43012 1.27487 1.53153 1.06096 1.19488 0.91846 1.33373 0.95278 0.92190 1.25615 0.95715 1.00163 1.02071 1.70209 1.00326 1.52979 1.33417 0.85472 0.77386 0.77037 0.81738 1.21753 1.22495 1.19660 1.21532 0.93694 0.93375 0.84842 0.91155 0.92685 0.95147 0.89762 0.91497 0.94552 0.92620 0.75125 0.86600 0.87410 0.90094 0.86252 0.77934 0.81472 0.78077 0.91432 0.90350 0.93334 0.91260 0.95451 0.96248 0.94400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.74 7.38 71.98 0.53 -4.21 16 2 C -0.11 -3.62 1.34 -51.75 -0.07 -3.69 16 3 C -0.12 -3.63 8.90 71.98 0.64 -2.99 16 4 C 0.14 4.20 3.34 45.68 0.15 4.35 16 5 H 0.09 2.85 7.35 -2.39 -0.02 2.84 16 6 N -0.70 -16.30 4.71 -439.30 -2.07 -18.37 16 7 C 0.52 11.95 7.83 87.66 0.69 12.64 16 8 O -0.58 -17.01 15.58 -3.04 -0.05 -17.06 16 9 C -0.14 -2.30 5.88 29.85 0.18 -2.13 16 10 C 0.15 2.53 5.80 86.38 0.50 3.03 16 11 N -0.38 -6.87 3.68 -348.03 -1.28 -8.15 16 12 C 0.05 0.71 11.45 83.54 0.96 1.67 16 13 C -0.29 -3.89 10.80 21.99 0.24 -3.65 16 14 C 0.04 0.59 12.02 85.24 1.02 1.61 16 15 N -0.34 -7.32 12.42 -57.03 -0.71 -8.03 16 16 C -0.12 -4.04 4.12 -10.31 -0.04 -4.08 16 17 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 18 C -0.10 -3.31 5.18 30.62 0.16 -3.15 16 19 C -0.14 -4.99 6.03 30.58 0.18 -4.80 16 20 C 0.19 8.87 3.93 86.80 0.34 9.21 16 21 N -0.58 -27.02 2.61 -686.17 -1.79 -28.81 16 22 C -0.27 -14.11 9.40 84.03 0.79 -13.32 16 23 H 0.06 3.12 7.87 -2.91 -0.02 3.09 16 24 C -0.04 -2.12 4.76 84.86 0.40 -1.72 16 25 N -0.92 -52.45 11.08 21.65 0.24 -52.21 16 26 Si 0.95 44.22 29.59 68.60 2.03 46.25 16 27 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 28 H -0.30 -14.01 7.11 99.48 0.71 -13.30 16 29 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 30 C 0.17 6.57 3.40 45.45 0.15 6.73 16 31 H 0.07 2.63 7.90 -2.39 -0.02 2.61 16 32 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.03 1.27 8.04 -2.39 -0.02 1.25 16 34 H 0.08 3.32 1.92 -2.39 0.00 3.31 16 35 H 0.07 1.64 6.02 -2.39 -0.01 1.62 16 36 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 38 H 0.41 8.21 6.83 -92.71 -0.63 7.58 16 39 H 0.12 1.54 8.14 -2.39 -0.02 1.53 16 40 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 41 H 0.08 1.55 8.10 -2.38 -0.02 1.54 16 42 H 0.12 1.59 8.03 -2.39 -0.02 1.57 16 43 H 0.20 1.25 8.06 -2.91 -0.02 1.22 16 44 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 45 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 46 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 47 H 0.08 2.56 4.71 -2.39 -0.01 2.55 16 48 H 0.05 1.81 8.14 -2.38 -0.02 1.80 16 49 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 50 H 0.03 1.45 6.56 -2.39 -0.02 1.43 16 51 H 0.02 0.99 5.52 -2.38 -0.01 0.98 16 52 H 0.25 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -67.56 397.15 3.50 -64.06 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.30 Total: 26.83 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 6.83 Total: -4.51 kcal Atomic # 7 Polarization: -109.96 SS G_CDS: -5.60 Total: -115.57 kcal Atomic # 8 Polarization: -17.01 SS G_CDS: -0.05 Total: -17.06 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.25 kcal Total: -67.56 3.50 -64.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030045.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.506 kcal (2) G-P(sol) polarization free energy of solvation -67.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds