Wall clock time and date at job start Wed Apr 1 2020 04:01:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 112.96816 * 2 1 4 4 C 1.51996 * 113.74191 * 229.34370 * 2 1 3 5 5 H 1.08992 * 114.59496 * 157.74228 * 4 2 1 6 6 N 1.46501 * 113.08649 * 26.46235 * 4 2 1 7 7 C 1.34776 * 119.99629 * 158.88934 * 6 4 2 8 8 O 1.21284 * 120.00245 * 0.02562 * 7 6 4 9 9 C 1.50702 * 120.00173 * 179.97438 * 7 6 4 10 10 C 1.52993 * 109.47484 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47243 * 180.02562 * 10 9 7 12 12 C 1.39871 * 126.04158 * 90.02363 * 11 10 9 13 13 N 1.30840 * 108.20520 * 179.97438 * 12 11 10 14 14 N 1.40086 * 108.20466 * 0.02562 * 13 12 11 15 15 H 0.97003 * 126.03672 * 180.02562 * 14 13 12 16 16 C 1.34947 * 107.92611 * 359.75867 * 14 13 12 17 17 C 1.54159 * 86.54081 * 272.20321 * 4 2 1 18 18 H 1.08994 * 114.24378 * 217.92844 * 17 4 2 19 19 C 1.51690 * 113.54183 * 88.26184 * 17 4 2 20 20 C 1.53017 * 110.05065 * 214.19890 * 19 17 4 21 21 C 1.52943 * 108.93495 * 63.72535 * 20 19 17 22 22 N 1.45897 * 109.88837 * 302.65615 * 21 20 19 23 23 C 1.36930 * 118.48329 * 219.33747 * 22 21 20 24 24 H 1.08003 * 119.99886 * 153.35889 * 23 22 21 25 25 C 1.38816 * 120.00388 * 333.35193 * 23 22 21 26 26 N 1.31621 * 119.99713 * 344.13641 * 25 23 22 27 27 Si 1.86797 * 119.99824 * 164.12639 * 25 23 22 28 28 H 1.48498 * 109.46997 * 94.97100 * 27 25 23 29 29 H 1.48503 * 109.47271 * 214.96452 * 27 25 23 30 30 H 1.48497 * 109.47642 * 334.96793 * 27 25 23 31 31 C 1.45092 * 123.02850 * 39.36271 * 22 21 20 32 32 H 1.09002 * 112.25115 * 204.17623 * 31 22 21 33 33 H 1.09000 * 109.47244 * 320.19647 * 1 2 3 34 34 H 1.09004 * 109.46846 * 80.19505 * 1 2 3 35 35 H 1.09000 * 109.47122 * 200.19613 * 1 2 3 36 36 H 1.08998 * 109.47437 * 191.48258 * 3 2 1 37 37 H 1.08997 * 109.47623 * 311.48583 * 3 2 1 38 38 H 1.09006 * 109.47055 * 71.48541 * 3 2 1 39 39 H 0.96995 * 120.00128 * 338.89627 * 6 4 2 40 40 H 1.08999 * 109.46868 * 300.00860 * 9 7 6 41 41 H 1.09009 * 109.46664 * 59.99803 * 9 7 6 42 42 H 1.09002 * 109.47151 * 300.00273 * 10 9 7 43 43 H 1.08997 * 109.47017 * 60.00252 * 10 9 7 44 44 H 1.07999 * 125.89499 * 359.96127 * 12 11 10 45 45 H 1.08003 * 126.13050 * 180.24324 * 16 14 13 46 46 H 1.08991 * 109.90289 * 93.54958 * 19 17 4 47 47 H 1.09004 * 108.41303 * 333.90921 * 19 17 4 48 48 H 1.09007 * 109.55716 * 303.89277 * 20 19 17 49 49 H 1.09000 * 109.56329 * 183.56188 * 20 19 17 50 50 H 1.08998 * 109.39946 * 62.78745 * 21 20 19 51 51 H 1.09001 * 109.40114 * 182.53134 * 21 20 19 52 52 H 0.97005 * 119.99685 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1271 1.4087 0.0000 4 6 2.1420 -0.9065 -1.0555 5 1 3.1642 -0.6516 -1.3349 6 7 1.2689 -1.1100 -2.2142 7 6 1.7920 -1.5104 -3.3900 8 8 2.9854 -1.7027 -3.4887 9 6 0.8939 -1.7203 -4.5818 10 6 1.7326 -2.1707 -5.7794 11 6 0.8346 -2.3800 -6.9714 12 6 0.4935 -1.4147 -7.9244 13 7 -0.3012 -1.9704 -8.8028 14 7 -0.4917 -3.3088 -8.4356 15 1 -1.0354 -3.9583 -8.9082 16 6 0.2197 -3.5364 -7.3117 17 6 2.0504 -2.0330 -0.0072 18 1 2.8959 -2.7208 -0.0142 19 6 0.7261 -2.7725 -0.0266 20 6 0.3428 -3.1996 1.3919 21 6 0.1261 -1.9490 2.2452 22 7 1.3317 -1.1273 2.2367 23 6 1.7115 -0.5131 3.4000 24 1 2.7510 -0.2744 3.5702 25 6 0.7607 -0.1970 4.3607 26 7 -0.5172 -0.1925 4.0453 27 14 1.2947 0.2216 6.1011 28 1 1.4121 1.6952 6.2419 29 1 0.2865 -0.2888 7.0646 30 1 2.6099 -0.4087 6.3806 31 6 2.1463 -0.9305 1.0522 32 1 3.1753 -0.6682 1.2979 33 1 -0.3634 0.7895 0.6579 34 1 -0.3633 0.1750 -1.0127 35 1 -0.3633 -0.9645 0.3548 36 1 3.1961 1.3503 -0.2046 37 1 1.6421 2.0090 -0.7698 38 1 1.9684 1.8706 0.9745 39 1 0.3144 -0.9564 -2.1352 40 1 0.1537 -2.4856 -4.3486 41 1 0.3868 -0.7861 -4.8236 42 1 2.4732 -1.4057 -6.0128 43 1 2.2393 -3.1049 -5.5374 44 1 0.8282 -0.3879 -7.9334 45 1 0.2848 -4.4732 -6.7781 46 1 0.8025 -3.6537 -0.6634 47 1 -0.0367 -2.1023 -0.4230 48 1 1.1448 -3.8000 1.8215 49 1 -0.5766 -3.7842 1.3612 50 1 -0.7068 -1.3742 1.8402 51 1 -0.1034 -2.2445 3.2690 52 1 -1.1817 0.0280 4.7167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264030072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:01:16 Heat of formation + Delta-G solvation = 90.405513 kcal Electronic energy + Delta-G solvation = -31574.477553 eV Core-core repulsion = 27577.269713 eV Total energy + Delta-G solvation = -3997.207841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.46602 -41.04450 -38.91869 -35.26963 -34.07551 -33.03756 -32.86638 -31.58990 -30.33448 -29.95352 -29.28308 -26.93083 -25.61132 -25.17408 -23.72748 -22.39667 -22.24556 -21.17181 -20.21443 -19.88501 -19.28183 -18.07106 -17.59609 -16.91717 -16.67629 -15.71554 -15.47721 -14.98077 -14.86556 -14.75079 -14.56813 -14.18173 -13.98564 -13.48561 -13.29575 -13.23877 -12.99409 -12.61710 -12.57861 -12.48958 -12.27573 -12.18849 -11.88722 -11.56012 -11.42185 -11.30177 -11.11482 -11.02291 -10.84232 -10.77823 -10.70251 -10.40490 -10.24466 -9.96587 -9.96295 -9.94542 -9.61262 -9.52741 -9.36578 -9.11617 -8.74718 -8.50135 -8.34677 -6.63943 -5.78522 -3.21557 1.59183 2.47017 2.60524 2.83490 3.36230 3.44191 3.45690 3.49671 4.48298 4.50877 4.60742 4.81139 4.96687 5.05071 5.07663 5.14371 5.26770 5.29843 5.33693 5.38367 5.48279 5.54168 5.58893 5.62776 5.70513 5.89158 5.98266 6.02305 6.06845 6.07996 6.13437 6.18956 6.26257 6.32345 6.35938 6.41786 6.48670 6.56933 6.59299 6.71678 6.74175 6.78981 6.86149 6.94288 7.02612 7.08582 7.22728 7.34142 7.41694 7.72117 7.79435 7.83335 8.44952 8.46481 9.25147 9.90525 10.34171 11.27652 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025033 B = 0.002249 C = 0.002202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.240573 B =12448.361612 C =12714.596887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.113 4.113 3 C -0.127 4.127 4 C 0.129 3.871 5 H 0.107 0.893 6 N -0.712 5.712 7 C 0.508 3.492 8 O -0.549 6.549 9 C -0.136 4.136 10 C -0.024 4.024 11 C -0.233 4.233 12 C 0.056 3.944 13 N -0.299 5.299 14 N -0.480 5.480 15 H 0.438 0.562 16 C 0.059 3.941 17 C -0.132 4.132 18 H 0.065 0.935 19 C -0.101 4.101 20 C -0.145 4.145 21 C 0.179 3.821 22 N -0.567 5.567 23 C -0.259 4.259 24 H 0.065 0.935 25 C 0.007 3.993 26 N -0.902 5.902 27 Si 0.899 3.101 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.280 1.280 31 C 0.188 3.812 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.028 0.972 35 H 0.093 0.907 36 H 0.045 0.955 37 H 0.039 0.961 38 H 0.062 0.938 39 H 0.400 0.600 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.183 0.817 45 H 0.176 0.824 46 H 0.042 0.958 47 H 0.072 0.928 48 H 0.053 0.947 49 H 0.051 0.949 50 H 0.038 0.962 51 H 0.068 0.932 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.268 -5.587 -19.461 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.117 4.117 3 C -0.184 4.184 4 C 0.024 3.976 5 H 0.125 0.875 6 N -0.363 5.363 7 C 0.295 3.705 8 O -0.427 6.427 9 C -0.177 4.177 10 C -0.063 4.063 11 C -0.245 4.245 12 C -0.131 4.131 13 N -0.121 5.121 14 N -0.188 5.188 15 H 0.282 0.718 16 C -0.088 4.088 17 C -0.153 4.153 18 H 0.084 0.916 19 C -0.139 4.139 20 C -0.183 4.183 21 C 0.054 3.946 22 N -0.285 5.285 23 C -0.389 4.389 24 H 0.083 0.917 25 C -0.192 4.192 26 N -0.546 5.546 27 Si 0.729 3.271 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.205 1.205 31 C 0.077 3.923 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.047 0.953 35 H 0.112 0.888 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.236 0.764 40 H 0.107 0.893 41 H 0.109 0.891 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.200 0.800 45 H 0.193 0.807 46 H 0.061 0.939 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.070 0.930 50 H 0.055 0.945 51 H 0.086 0.914 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.260 -5.519 -20.448 21.217 hybrid contribution -0.115 -0.077 1.482 1.489 sum -1.375 -5.596 -18.965 19.822 Atomic orbital electron populations 1.22009 0.93493 1.05210 0.98625 1.22664 0.96665 0.95206 0.97210 1.21644 0.99076 0.96190 1.01519 1.22434 0.94821 0.97525 0.82784 0.87507 1.46195 1.11668 1.68076 1.10361 1.20722 0.89061 0.76436 0.84306 1.90676 1.16131 1.51339 1.84599 1.21698 0.98875 1.03632 0.93446 1.19578 0.95007 1.02884 0.88839 1.20209 1.08642 0.93339 1.02289 1.23888 0.96223 1.00432 0.92542 1.77333 1.21390 0.89757 1.23644 1.46310 1.40252 1.10240 1.22006 0.71815 1.22464 0.95638 1.00436 0.90262 1.22985 0.98277 0.96815 0.97271 0.91640 1.21206 0.96668 0.98595 0.97398 1.22070 0.99880 1.00380 0.96014 1.20628 0.88234 0.87420 0.98336 1.43181 1.27068 1.53006 1.05218 1.19229 0.92217 1.33643 0.93786 0.91720 1.24976 0.95434 0.99623 0.99157 1.70057 0.99595 1.52288 1.32662 0.86337 0.77750 0.78010 0.85009 1.21580 1.21686 1.20510 1.21048 0.94726 0.91338 0.85179 0.90618 0.91718 0.95296 0.88848 0.93593 0.94228 0.91855 0.76358 0.89264 0.89130 0.90372 0.90631 0.79993 0.80661 0.93882 0.90978 0.92850 0.93028 0.94451 0.91396 0.93778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 6.84 37.16 0.25 -2.09 16 2 C -0.11 -1.93 1.30 -154.89 -0.20 -2.13 16 3 C -0.13 -2.11 9.13 37.16 0.34 -1.77 16 4 C 0.13 2.02 3.55 -67.84 -0.24 1.78 16 5 H 0.11 1.78 7.36 -51.93 -0.38 1.40 16 6 N -0.71 -9.31 4.36 -53.72 -0.23 -9.55 16 7 C 0.51 6.61 7.83 -10.98 -0.09 6.52 16 8 O -0.55 -9.15 15.62 5.55 0.09 -9.07 16 9 C -0.14 -1.24 5.68 -27.89 -0.16 -1.40 16 10 C -0.02 -0.22 4.99 -27.89 -0.14 -0.36 16 11 C -0.23 -1.97 5.35 -105.05 -0.56 -2.54 16 12 C 0.06 0.50 11.96 -17.36 -0.21 0.30 16 13 N -0.30 -2.99 12.70 30.62 0.39 -2.60 16 14 N -0.48 -3.47 7.36 30.45 0.22 -3.25 16 15 H 0.44 1.79 8.96 -182.61 -1.64 0.15 16 16 C 0.06 0.41 11.90 -17.22 -0.20 0.21 16 17 C -0.13 -2.25 4.10 -90.65 -0.37 -2.62 16 18 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 19 C -0.10 -1.62 4.75 -27.39 -0.13 -1.75 16 20 C -0.14 -2.61 6.06 -26.75 -0.16 -2.77 16 21 C 0.18 3.95 4.00 -4.40 -0.02 3.94 16 22 N -0.57 -13.03 2.67 -166.86 -0.44 -13.48 16 23 C -0.26 -6.71 9.46 -15.06 -0.14 -6.85 16 24 H 0.07 1.68 7.85 -52.48 -0.41 1.27 16 25 C 0.01 0.18 4.86 -17.43 -0.08 0.09 16 26 N -0.90 -24.63 11.05 55.49 0.61 -24.02 16 27 Si 0.90 21.12 29.58 -169.99 -5.03 16.10 16 28 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 31 C 0.19 3.69 3.60 -68.39 -0.25 3.44 16 32 H 0.08 1.52 7.97 -51.93 -0.41 1.11 16 33 H 0.06 1.30 8.08 -51.93 -0.42 0.88 16 34 H 0.03 0.40 6.33 -51.93 -0.33 0.07 16 35 H 0.09 1.68 1.99 -51.93 -0.10 1.58 16 36 H 0.04 0.71 7.92 -51.93 -0.41 0.30 16 37 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 39 H 0.40 4.65 5.62 -40.82 -0.23 4.42 16 40 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 43 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 44 H 0.18 1.24 8.06 -52.49 -0.42 0.81 16 45 H 0.18 0.70 8.06 -52.48 -0.42 0.28 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 47 H 0.07 1.10 3.76 -51.93 -0.20 0.91 16 48 H 0.05 1.00 8.14 -51.92 -0.42 0.57 16 49 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.04 0.88 5.66 -51.93 -0.29 0.58 16 51 H 0.07 1.72 6.55 -51.93 -0.34 1.38 16 52 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 393.82 15.07 5.93 5.93 Total: -1.00 -31.15 393.82 -10.19 -41.34 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -9.37 Total: 6.59 kcal Atomic # 6 Polarization: -5.64 SS G_CDS: -2.36 Total: -8.00 kcal Atomic # 7 Polarization: -53.44 SS G_CDS: 0.55 Total: -52.89 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.15 -10.19 -41.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.747 kcal (2) G-P(sol) polarization free energy of solvation -31.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds