Wall clock time and date at job start Wed Apr 1 2020 04:00:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 113.19626 * 2 1 4 4 C 1.53130 * 114.35234 * 227.13234 * 2 1 3 5 5 H 1.08993 * 114.35019 * 169.29517 * 4 2 1 6 6 N 1.46505 * 113.14734 * 37.49077 * 4 2 1 7 7 C 1.34779 * 119.99690 * 160.72353 * 6 4 2 8 8 O 1.21276 * 119.99676 * 0.02562 * 7 6 4 9 9 C 1.50698 * 119.99990 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.47169 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.34662 * 126.59084 * 274.68457 * 11 10 9 13 13 N 1.34132 * 108.02042 * 179.87677 * 12 11 10 14 14 C 1.30500 * 109.25301 * 0.39955 * 13 12 11 15 15 N 1.35044 * 108.70391 * 359.75358 * 14 13 12 16 16 H 0.96998 * 126.39922 * 180.02562 * 15 14 13 17 17 C 1.50006 * 84.78500 * 283.45209 * 4 2 1 18 18 H 1.09000 * 112.50141 * 75.45471 * 17 4 2 19 19 C 1.51199 * 126.17077 * 218.95578 * 17 4 2 20 20 C 1.54089 * 106.19519 * 160.16152 * 19 17 4 21 21 C 1.52494 * 112.67568 * 304.56214 * 20 19 17 22 22 N 1.48410 * 111.86708 * 46.78666 * 21 20 19 23 23 C 1.36940 * 123.16643 * 128.16665 * 22 21 20 24 24 H 1.08003 * 119.99572 * 151.23314 * 23 22 21 25 25 C 1.38810 * 119.99755 * 331.22672 * 23 22 21 26 26 N 1.31620 * 120.00150 * 341.98234 * 25 23 22 27 27 Si 1.86793 * 119.99672 * 161.97454 * 25 23 22 28 28 H 1.48502 * 109.47094 * 60.00230 * 27 25 23 29 29 H 1.48500 * 109.47397 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.47593 * 300.00269 * 27 25 23 31 31 C 1.45380 * 113.66582 * 308.16061 * 22 21 20 32 32 H 1.09004 * 111.55191 * 300.55319 * 31 22 21 33 33 H 1.08991 * 109.47268 * 281.98016 * 1 2 3 34 34 H 1.09004 * 109.47069 * 41.98343 * 1 2 3 35 35 H 1.09003 * 109.46826 * 161.97993 * 1 2 3 36 36 H 1.08995 * 109.47623 * 192.67459 * 3 2 1 37 37 H 1.09002 * 109.46799 * 312.67688 * 3 2 1 38 38 H 1.09000 * 109.47249 * 72.66722 * 3 2 1 39 39 H 0.96996 * 120.00126 * 340.72669 * 6 4 2 40 40 H 1.09003 * 109.47092 * 300.00348 * 9 7 6 41 41 H 1.09003 * 109.47103 * 59.99593 * 9 7 6 42 42 H 1.09000 * 109.46621 * 299.99629 * 10 9 7 43 43 H 1.08992 * 109.47148 * 59.99876 * 10 9 7 44 44 H 1.07995 * 125.99163 * 0.02824 * 12 11 10 45 45 H 1.08000 * 125.64869 * 179.73343 * 14 13 12 46 46 H 1.09003 * 110.09795 * 279.32841 * 19 17 4 47 47 H 1.09000 * 110.10402 * 40.87382 * 19 17 4 48 48 H 1.09005 * 108.84063 * 65.38516 * 20 19 17 49 49 H 1.08996 * 108.84212 * 183.73632 * 20 19 17 50 50 H 1.08995 * 109.00839 * 167.40296 * 21 20 19 51 51 H 1.09000 * 109.00011 * 286.25125 * 21 20 19 52 52 H 0.97002 * 119.99698 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1327 1.4063 0.0000 4 6 2.1615 -0.9491 -1.0225 5 1 3.2356 -0.8187 -1.1531 6 7 1.4252 -1.0049 -2.2878 7 6 2.0310 -1.4654 -3.4002 8 8 3.1855 -1.8340 -3.3535 9 6 1.2735 -1.5235 -4.7017 10 6 2.1844 -2.0808 -5.7975 11 6 1.4266 -2.1393 -7.0988 12 6 0.6239 -3.1368 -7.5161 13 7 0.1401 -2.8032 -8.7218 14 6 0.6193 -1.6408 -9.0713 15 7 1.4268 -1.1915 -8.0865 16 1 1.9154 -0.3536 -8.0801 17 6 1.7886 -2.0269 -0.0481 18 1 0.7223 -2.2524 -0.0633 19 6 2.6183 -3.2425 0.2985 20 6 2.0896 -3.7516 1.6533 21 6 2.1139 -2.6772 2.7352 22 7 1.5506 -1.3923 2.2509 23 6 0.5666 -0.7085 2.9138 24 1 0.5050 0.3664 2.8287 25 6 -0.3515 -1.3969 3.6948 26 7 -0.5134 -2.6929 3.5318 27 14 -1.3569 -0.4839 4.9773 28 1 -2.1680 0.5681 4.3134 29 1 -2.2571 -1.4388 5.6723 30 1 -0.4446 0.1448 5.9661 31 6 2.1420 -0.9280 1.0066 32 1 3.2173 -0.7790 1.1054 33 1 -0.3633 0.2133 1.0052 34 1 -0.3633 0.7639 -0.6874 35 1 -0.3633 -0.9773 -0.3179 36 1 3.1973 1.3454 -0.2255 37 1 1.6354 2.0146 -0.7556 38 1 1.9944 1.8609 0.9810 39 1 0.5017 -0.7104 -2.3250 40 1 0.4044 -2.1714 -4.5877 41 1 0.9456 -0.5208 -4.9762 42 1 3.0536 -1.4331 -5.9116 43 1 2.5118 -3.0833 -5.5227 44 1 0.4057 -4.0449 -6.9738 45 1 0.4058 -1.1238 -9.9952 46 1 2.4940 -4.0108 -0.4647 47 1 3.6693 -2.9668 0.3842 48 1 1.0640 -4.0974 1.5236 49 1 2.7037 -4.5917 1.9777 50 1 1.5309 -3.0205 3.5897 51 1 3.1444 -2.5149 3.0512 52 1 -1.1553 -3.1738 4.0774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264030344.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:54 Heat of formation + Delta-G solvation = 77.692410 kcal Electronic energy + Delta-G solvation = -31459.921721 eV Core-core repulsion = 27462.162598 eV Total energy + Delta-G solvation = -3997.759122 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.29209 -41.09726 -39.02401 -35.38399 -34.08840 -33.17133 -32.90076 -32.54883 -30.27843 -29.41557 -28.95507 -27.15365 -25.86978 -25.23201 -23.83039 -22.17627 -21.79895 -21.09432 -20.63955 -20.02389 -19.21555 -18.36815 -18.15426 -16.86799 -16.55248 -15.83550 -15.66519 -15.19079 -14.64407 -14.55778 -14.20394 -14.13629 -13.91801 -13.67350 -13.52383 -13.26722 -13.12401 -12.96099 -12.71025 -12.54452 -12.39866 -12.33214 -11.76944 -11.59215 -11.43473 -11.31791 -11.17145 -11.06532 -10.92076 -10.71859 -10.45514 -10.31040 -10.29313 -10.22663 -10.10662 -9.99894 -9.75876 -9.51414 -9.32587 -8.91518 -8.61906 -8.58705 -8.39275 -6.56751 -5.79207 -3.20742 1.74442 2.75447 2.82443 2.90506 3.34692 3.39775 3.42107 3.44421 4.38475 4.46685 4.57480 4.71888 4.78041 4.81843 4.96960 5.05006 5.16699 5.18286 5.28562 5.29170 5.37946 5.44017 5.50396 5.59894 5.81752 5.88163 5.89801 5.91603 6.04339 6.08867 6.13193 6.15065 6.29544 6.33163 6.37780 6.47834 6.50555 6.52976 6.62836 6.68009 6.76757 6.82972 6.95011 7.06562 7.07222 7.10175 7.24278 7.48640 7.68999 7.73417 7.75070 7.79181 8.37538 8.43243 9.13714 9.80803 10.47710 11.27466 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017447 B = 0.002370 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.490113 B =11810.568919 C =11988.723716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.066 4.066 3 C -0.132 4.132 4 C 0.142 3.858 5 H 0.108 0.892 6 N -0.712 5.712 7 C 0.510 3.490 8 O -0.547 6.547 9 C -0.137 4.137 10 C -0.027 4.027 11 C -0.019 4.019 12 C -0.024 4.024 13 N -0.495 5.495 14 C 0.178 3.822 15 N -0.568 5.568 16 H 0.419 0.581 17 C -0.164 4.164 18 H 0.099 0.901 19 C -0.088 4.088 20 C -0.122 4.122 21 C 0.156 3.844 22 N -0.568 5.568 23 C -0.236 4.236 24 H 0.066 0.934 25 C 0.001 3.999 26 N -0.894 5.894 27 Si 0.896 3.104 28 H -0.284 1.284 29 H -0.292 1.292 30 H -0.285 1.285 31 C 0.145 3.855 32 H 0.051 0.949 33 H 0.094 0.906 34 H 0.036 0.964 35 H 0.058 0.942 36 H 0.050 0.950 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.399 0.601 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.170 0.830 45 H 0.206 0.794 46 H 0.040 0.960 47 H 0.048 0.952 48 H 0.065 0.935 49 H 0.040 0.960 50 H 0.098 0.902 51 H -0.004 1.004 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.680 5.005 -18.553 19.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.067 4.067 3 C -0.189 4.189 4 C 0.038 3.962 5 H 0.126 0.874 6 N -0.362 5.362 7 C 0.296 3.704 8 O -0.425 6.425 9 C -0.178 4.178 10 C -0.066 4.066 11 C -0.134 4.134 12 C -0.171 4.171 13 N -0.213 5.213 14 C -0.105 4.105 15 N -0.171 5.171 16 H 0.256 0.744 17 C -0.186 4.186 18 H 0.117 0.883 19 C -0.125 4.125 20 C -0.161 4.161 21 C 0.032 3.968 22 N -0.290 5.290 23 C -0.365 4.365 24 H 0.083 0.917 25 C -0.197 4.197 26 N -0.539 5.539 27 Si 0.726 3.274 28 H -0.210 1.210 29 H -0.218 1.218 30 H -0.212 1.212 31 C 0.036 3.964 32 H 0.068 0.932 33 H 0.112 0.888 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.069 0.931 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.234 0.766 40 H 0.116 0.884 41 H 0.106 0.894 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.187 0.813 45 H 0.223 0.777 46 H 0.059 0.941 47 H 0.066 0.934 48 H 0.084 0.916 49 H 0.059 0.941 50 H 0.116 0.884 51 H 0.014 0.986 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.784 4.119 -18.827 19.640 hybrid contribution -0.345 1.388 1.070 1.786 sum 3.439 5.508 -17.757 18.907 Atomic orbital electron populations 1.21704 0.92082 1.00450 1.04304 1.21380 0.96892 0.93411 0.95044 1.21723 0.99674 0.95915 1.01635 1.22088 0.96641 0.97557 0.79901 0.87437 1.46167 1.16205 1.64745 1.09098 1.20543 0.87339 0.77159 0.85364 1.90690 1.17592 1.48136 1.86104 1.21681 0.99947 1.03486 0.92663 1.19752 0.95956 1.04149 0.86790 1.21370 1.05931 0.92349 0.93781 1.22167 1.00402 1.00405 0.94171 1.70292 1.24888 1.12391 1.13770 1.24968 0.95469 0.94324 0.95775 1.43331 1.38449 1.19221 1.16147 0.74362 1.23374 1.01314 0.96026 0.97847 0.88330 1.21107 0.97947 0.96574 0.96910 1.21800 1.00878 0.98307 0.95072 1.20919 0.94208 0.84764 0.96953 1.43784 1.41402 1.22263 1.21543 1.18884 1.04439 0.90008 1.23185 0.91673 1.24968 0.97335 0.95909 1.01528 1.69947 1.36365 1.07227 1.40329 0.86473 0.79773 0.78871 0.82255 1.21026 1.21769 1.21214 1.21493 0.94855 0.93573 0.86489 0.93196 0.88780 0.94520 0.92360 0.93137 0.93393 0.92111 0.76585 0.88405 0.89378 0.90412 0.88489 0.81292 0.77703 0.94132 0.93366 0.91636 0.94118 0.88431 0.98566 0.93715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.13 7.50 37.16 0.28 -1.85 16 2 C -0.07 -1.07 1.33 -160.55 -0.21 -1.28 16 3 C -0.13 -1.90 9.25 37.16 0.34 -1.56 16 4 C 0.14 2.23 3.27 -76.30 -0.25 1.98 16 5 H 0.11 1.80 7.49 -51.93 -0.39 1.42 16 6 N -0.71 -9.27 5.26 -62.20 -0.33 -9.60 16 7 C 0.51 6.57 7.83 -10.99 -0.09 6.48 16 8 O -0.55 -9.05 15.66 5.56 0.09 -8.96 16 9 C -0.14 -1.22 5.68 -27.88 -0.16 -1.38 16 10 C -0.03 -0.24 5.06 -27.88 -0.14 -0.38 16 11 C -0.02 -0.17 6.49 -81.60 -0.53 -0.69 16 12 C -0.02 -0.25 11.79 -17.81 -0.21 -0.46 16 13 N -0.49 -5.59 11.25 -14.67 -0.17 -5.76 16 14 C 0.18 1.38 13.04 -90.37 -1.18 0.21 16 15 N -0.57 -3.83 6.15 -10.30 -0.06 -3.89 16 16 H 0.42 1.54 8.96 -40.82 -0.37 1.17 16 17 C -0.16 -3.01 2.94 -95.82 -0.28 -3.29 16 18 H 0.10 2.05 5.99 -51.93 -0.31 1.73 16 19 C -0.09 -1.64 6.11 -27.07 -0.17 -1.81 16 20 C -0.12 -2.50 5.90 -26.42 -0.16 -2.65 16 21 C 0.16 3.59 5.76 -3.25 -0.02 3.57 16 22 N -0.57 -13.20 2.91 -173.04 -0.50 -13.70 16 23 C -0.24 -5.92 7.63 -15.06 -0.11 -6.04 16 24 H 0.07 1.63 7.33 -52.48 -0.38 1.24 16 25 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 26 N -0.89 -24.24 11.18 55.49 0.62 -23.62 16 27 Si 0.90 20.76 29.59 -169.99 -5.03 15.73 16 28 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 29 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 30 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 31 C 0.14 2.83 3.01 -75.19 -0.23 2.60 16 32 H 0.05 1.00 7.97 -51.93 -0.41 0.58 16 33 H 0.09 1.87 5.55 -51.93 -0.29 1.59 16 34 H 0.04 0.49 8.06 -51.93 -0.42 0.08 16 35 H 0.06 1.01 5.79 -51.93 -0.30 0.71 16 36 H 0.05 0.68 8.00 -51.93 -0.42 0.27 16 37 H 0.05 0.60 8.08 -51.93 -0.42 0.18 16 38 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.40 4.48 7.30 -40.82 -0.30 4.18 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 44 H 0.17 1.56 8.06 -52.49 -0.42 1.14 16 45 H 0.21 0.77 8.06 -52.49 -0.42 0.35 16 46 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.05 0.88 8.05 -51.93 -0.42 0.46 16 48 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 49 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 50 H 0.10 2.52 5.67 -51.93 -0.29 2.23 16 51 H 0.00 -0.08 8.14 -51.93 -0.42 -0.50 16 52 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 LS Contribution 402.87 15.07 6.07 6.07 Total: -1.00 -31.29 402.87 -11.01 -42.30 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -8.50 Total: 8.04 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: -3.20 Total: -6.60 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.44 Total: -56.57 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -31.29 -11.01 -42.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030344.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.991 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.299 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds