Wall clock time and date at job start Wed Apr 1 2020 04:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 113.19626 * 2 1 4 4 C 1.53130 * 114.35234 * 227.13234 * 2 1 3 5 5 H 1.08993 * 114.35019 * 169.29517 * 4 2 1 6 6 N 1.46505 * 113.14734 * 37.49077 * 4 2 1 7 7 C 1.34779 * 119.99690 * 160.72353 * 6 4 2 8 8 O 1.21276 * 119.99676 * 0.02562 * 7 6 4 9 9 C 1.50698 * 119.99990 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.47169 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.46850 * 179.97438 * 10 9 7 12 12 C 1.34662 * 126.59084 * 274.68457 * 11 10 9 13 13 N 1.34132 * 108.02042 * 179.87677 * 12 11 10 14 14 C 1.30500 * 109.25301 * 0.39955 * 13 12 11 15 15 N 1.35044 * 108.70391 * 359.75358 * 14 13 12 16 16 H 0.96998 * 126.39922 * 180.02562 * 15 14 13 17 17 C 1.50006 * 84.78500 * 283.45209 * 4 2 1 18 18 H 1.09000 * 112.50141 * 75.45471 * 17 4 2 19 19 C 1.51199 * 126.17077 * 218.95578 * 17 4 2 20 20 C 1.54089 * 106.19519 * 160.16152 * 19 17 4 21 21 C 1.52494 * 112.67568 * 304.56214 * 20 19 17 22 22 N 1.48410 * 111.86708 * 46.78666 * 21 20 19 23 23 C 1.36940 * 123.16643 * 128.16665 * 22 21 20 24 24 H 1.08003 * 119.99572 * 151.23314 * 23 22 21 25 25 C 1.38810 * 119.99755 * 331.22672 * 23 22 21 26 26 N 1.31620 * 120.00150 * 341.98234 * 25 23 22 27 27 Si 1.86793 * 119.99672 * 161.97454 * 25 23 22 28 28 H 1.48502 * 109.47094 * 60.00230 * 27 25 23 29 29 H 1.48500 * 109.47397 * 180.02562 * 27 25 23 30 30 H 1.48504 * 109.47593 * 300.00269 * 27 25 23 31 31 C 1.45380 * 113.66582 * 308.16061 * 22 21 20 32 32 H 1.09004 * 111.55191 * 300.55319 * 31 22 21 33 33 H 1.08991 * 109.47268 * 281.98016 * 1 2 3 34 34 H 1.09004 * 109.47069 * 41.98343 * 1 2 3 35 35 H 1.09003 * 109.46826 * 161.97993 * 1 2 3 36 36 H 1.08995 * 109.47623 * 192.67459 * 3 2 1 37 37 H 1.09002 * 109.46799 * 312.67688 * 3 2 1 38 38 H 1.09000 * 109.47249 * 72.66722 * 3 2 1 39 39 H 0.96996 * 120.00126 * 340.72669 * 6 4 2 40 40 H 1.09003 * 109.47092 * 300.00348 * 9 7 6 41 41 H 1.09003 * 109.47103 * 59.99593 * 9 7 6 42 42 H 1.09000 * 109.46621 * 299.99629 * 10 9 7 43 43 H 1.08992 * 109.47148 * 59.99876 * 10 9 7 44 44 H 1.07995 * 125.99163 * 0.02824 * 12 11 10 45 45 H 1.08000 * 125.64869 * 179.73343 * 14 13 12 46 46 H 1.09003 * 110.09795 * 279.32841 * 19 17 4 47 47 H 1.09000 * 110.10402 * 40.87382 * 19 17 4 48 48 H 1.09005 * 108.84063 * 65.38516 * 20 19 17 49 49 H 1.08996 * 108.84212 * 183.73632 * 20 19 17 50 50 H 1.08995 * 109.00839 * 167.40296 * 21 20 19 51 51 H 1.09000 * 109.00011 * 286.25125 * 21 20 19 52 52 H 0.97002 * 119.99698 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1327 1.4063 0.0000 4 6 2.1615 -0.9491 -1.0225 5 1 3.2356 -0.8187 -1.1531 6 7 1.4252 -1.0049 -2.2878 7 6 2.0310 -1.4654 -3.4002 8 8 3.1855 -1.8340 -3.3535 9 6 1.2735 -1.5235 -4.7017 10 6 2.1844 -2.0808 -5.7975 11 6 1.4266 -2.1393 -7.0988 12 6 0.6239 -3.1368 -7.5161 13 7 0.1401 -2.8032 -8.7218 14 6 0.6193 -1.6408 -9.0713 15 7 1.4268 -1.1915 -8.0865 16 1 1.9154 -0.3536 -8.0801 17 6 1.7886 -2.0269 -0.0481 18 1 0.7223 -2.2524 -0.0633 19 6 2.6183 -3.2425 0.2985 20 6 2.0896 -3.7516 1.6533 21 6 2.1139 -2.6772 2.7352 22 7 1.5506 -1.3923 2.2509 23 6 0.5666 -0.7085 2.9138 24 1 0.5050 0.3664 2.8287 25 6 -0.3515 -1.3969 3.6948 26 7 -0.5134 -2.6929 3.5318 27 14 -1.3569 -0.4839 4.9773 28 1 -2.1680 0.5681 4.3134 29 1 -2.2571 -1.4388 5.6723 30 1 -0.4446 0.1448 5.9661 31 6 2.1420 -0.9280 1.0066 32 1 3.2173 -0.7790 1.1054 33 1 -0.3633 0.2133 1.0052 34 1 -0.3633 0.7639 -0.6874 35 1 -0.3633 -0.9773 -0.3179 36 1 3.1973 1.3454 -0.2255 37 1 1.6354 2.0146 -0.7556 38 1 1.9944 1.8609 0.9810 39 1 0.5017 -0.7104 -2.3250 40 1 0.4044 -2.1714 -4.5877 41 1 0.9456 -0.5208 -4.9762 42 1 3.0536 -1.4331 -5.9116 43 1 2.5118 -3.0833 -5.5227 44 1 0.4057 -4.0449 -6.9738 45 1 0.4058 -1.1238 -9.9952 46 1 2.4940 -4.0108 -0.4647 47 1 3.6693 -2.9668 0.3842 48 1 1.0640 -4.0974 1.5236 49 1 2.7037 -4.5917 1.9777 50 1 1.5309 -3.0205 3.5897 51 1 3.1444 -2.5149 3.0512 52 1 -1.1553 -3.1738 4.0774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264030344.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:53 Heat of formation + Delta-G solvation = 59.426773 kcal Electronic energy + Delta-G solvation = -31460.713778 eV Core-core repulsion = 27462.162598 eV Total energy + Delta-G solvation = -3998.551180 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.92359 -42.49386 -40.15794 -37.01029 -34.87178 -34.67288 -34.35657 -33.19508 -32.08662 -30.81709 -29.76157 -28.48638 -27.49024 -26.50704 -25.09396 -23.68513 -22.47389 -22.26845 -21.60154 -21.17588 -20.79667 -19.75424 -18.85569 -18.46509 -17.70118 -17.17985 -16.61610 -16.34934 -15.86833 -15.82394 -15.51293 -15.27914 -15.18707 -14.93422 -14.68445 -14.45057 -14.36784 -14.11904 -14.03473 -13.89687 -13.64585 -13.23530 -13.10434 -13.02564 -12.93670 -12.77771 -12.65012 -12.58735 -12.29073 -12.14136 -12.12525 -12.05062 -11.65329 -11.49092 -11.27111 -11.12448 -10.95489 -10.90288 -10.69887 -10.59683 -10.24349 -9.78918 -9.29306 -8.44543 -7.76527 -5.18231 1.11991 1.48152 1.52099 1.56353 1.73799 2.18812 2.26439 2.43681 2.57800 3.30618 3.43885 3.49600 3.70873 3.76183 3.90413 3.95873 4.05329 4.11289 4.13518 4.31567 4.34162 4.43473 4.53298 4.55177 4.63456 4.66767 4.69243 4.71179 4.75315 4.80945 4.84761 4.92217 5.01348 5.07819 5.12510 5.13860 5.16093 5.19706 5.30580 5.37759 5.38145 5.42897 5.60549 5.62758 5.66818 5.73316 5.80346 5.81051 5.89141 6.48999 6.61166 6.69218 7.16890 7.18037 7.36315 7.90911 8.56574 9.28592 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.017447 B = 0.002370 C = 0.002335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.490113 B =11810.568919 C =11988.723716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.057 4.057 3 C -0.127 4.127 4 C 0.163 3.837 5 H 0.104 0.896 6 N -0.707 5.707 7 C 0.511 3.489 8 O -0.584 6.584 9 C -0.125 4.125 10 C -0.019 4.019 11 C -0.016 4.016 12 C -0.050 4.050 13 N -0.541 5.541 14 C 0.188 3.812 15 N -0.556 5.556 16 H 0.435 0.565 17 C -0.156 4.156 18 H 0.074 0.926 19 C -0.082 4.082 20 C -0.110 4.110 21 C 0.156 3.844 22 N -0.582 5.582 23 C -0.227 4.227 24 H 0.066 0.934 25 C -0.048 4.048 26 N -0.921 5.921 27 Si 0.950 3.050 28 H -0.275 1.275 29 H -0.301 1.301 30 H -0.287 1.287 31 C 0.127 3.873 32 H 0.050 0.950 33 H 0.059 0.941 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.048 0.952 39 H 0.411 0.589 40 H 0.108 0.892 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.168 0.832 45 H 0.243 0.757 46 H 0.047 0.953 47 H 0.056 0.944 48 H 0.036 0.964 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.001 0.999 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.009 7.249 -21.006 22.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.058 4.058 3 C -0.184 4.184 4 C 0.057 3.943 5 H 0.122 0.878 6 N -0.357 5.357 7 C 0.299 3.701 8 O -0.464 6.464 9 C -0.165 4.165 10 C -0.059 4.059 11 C -0.132 4.132 12 C -0.197 4.197 13 N -0.261 5.261 14 C -0.096 4.096 15 N -0.161 5.161 16 H 0.276 0.724 17 C -0.178 4.178 18 H 0.092 0.908 19 C -0.120 4.120 20 C -0.149 4.149 21 C 0.031 3.969 22 N -0.304 5.304 23 C -0.357 4.357 24 H 0.084 0.916 25 C -0.244 4.244 26 N -0.568 5.568 27 Si 0.780 3.220 28 H -0.201 1.201 29 H -0.228 1.228 30 H -0.214 1.214 31 C 0.019 3.981 32 H 0.068 0.932 33 H 0.078 0.922 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.248 0.752 40 H 0.126 0.874 41 H 0.133 0.867 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.185 0.815 45 H 0.259 0.741 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.054 0.946 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.019 0.981 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 4.116 6.407 -21.299 22.619 hybrid contribution -0.386 0.697 1.788 1.958 sum 3.730 7.104 -19.511 21.096 Atomic orbital electron populations 1.21584 0.92229 1.00973 1.03031 1.21325 0.96655 0.94416 0.93449 1.21683 1.00410 0.94514 1.01840 1.21630 0.96577 0.95314 0.80740 0.87771 1.46031 1.16616 1.64821 1.08242 1.21173 0.86968 0.75760 0.86218 1.90683 1.19422 1.49566 1.86720 1.21643 0.99473 1.05262 0.90159 1.19623 0.95977 1.03460 0.86791 1.21213 1.05477 0.92489 0.94038 1.22329 1.01535 1.01221 0.94621 1.70262 1.26807 1.14485 1.14543 1.25683 0.93999 0.93360 0.96534 1.43290 1.38089 1.19467 1.15269 0.72424 1.23237 0.99808 0.95901 0.98851 0.90755 1.21043 0.98276 0.96955 0.95738 1.21638 0.99552 0.98061 0.95696 1.20833 0.93653 0.85588 0.96873 1.43928 1.41119 1.22263 1.23094 1.19062 1.03983 0.90117 1.22511 0.91645 1.25550 0.98853 0.96546 1.03458 1.70097 1.37220 1.08332 1.41140 0.85598 0.78430 0.77738 0.80209 1.20132 1.22756 1.21352 1.21772 0.94886 0.95928 0.85492 0.93203 0.92216 0.90874 0.93545 0.92241 0.90876 0.93293 0.75238 0.87417 0.86740 0.90168 0.89858 0.81479 0.74079 0.93451 0.92508 0.94558 0.92455 0.91555 0.98066 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.84 7.50 71.98 0.54 -3.30 16 2 C -0.06 -1.76 1.33 -56.10 -0.07 -1.84 16 3 C -0.13 -3.31 9.25 71.98 0.67 -2.64 16 4 C 0.16 4.81 3.27 39.57 0.13 4.94 16 5 H 0.10 3.27 7.49 -2.39 -0.02 3.25 16 6 N -0.71 -16.63 5.26 -469.10 -2.47 -19.09 16 7 C 0.51 11.93 7.83 87.66 0.69 12.61 16 8 O -0.58 -18.27 15.66 -3.02 -0.05 -18.31 16 9 C -0.13 -1.87 5.68 29.85 0.17 -1.70 16 10 C -0.02 -0.30 5.06 29.85 0.15 -0.15 16 11 C -0.02 -0.24 6.49 40.95 0.27 0.02 16 12 C -0.05 -1.01 11.79 83.52 0.98 -0.02 16 13 N -0.54 -11.56 11.25 -200.32 -2.25 -13.81 16 14 C 0.19 2.42 13.04 180.26 2.35 4.78 16 15 N -0.56 -5.89 6.15 -186.49 -1.15 -7.03 16 16 H 0.43 1.67 8.96 -92.71 -0.83 0.84 16 17 C -0.16 -5.67 2.94 -14.16 -0.04 -5.71 16 18 H 0.07 3.11 5.99 -2.39 -0.01 3.09 16 19 C -0.08 -3.05 6.11 30.37 0.19 -2.87 16 20 C -0.11 -4.62 5.90 30.79 0.18 -4.44 16 21 C 0.16 7.34 5.76 85.84 0.49 7.84 16 22 N -0.58 -27.48 2.91 -701.37 -2.04 -29.52 16 23 C -0.23 -11.55 7.63 84.03 0.64 -10.91 16 24 H 0.07 3.28 7.33 -2.91 -0.02 3.26 16 25 C -0.05 -2.57 5.06 84.86 0.43 -2.14 16 26 N -0.92 -51.81 11.18 21.65 0.24 -51.56 16 27 Si 0.95 43.50 29.59 68.60 2.03 45.53 16 28 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 29 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 30 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 31 C 0.13 4.91 3.01 40.89 0.12 5.04 16 32 H 0.05 1.95 7.97 -2.39 -0.02 1.93 16 33 H 0.06 2.35 5.55 -2.39 -0.01 2.34 16 34 H 0.07 1.76 8.06 -2.39 -0.02 1.74 16 35 H 0.05 1.57 5.79 -2.39 -0.01 1.55 16 36 H 0.06 1.44 8.00 -2.39 -0.02 1.42 16 37 H 0.07 1.54 8.08 -2.39 -0.02 1.53 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.41 7.96 7.30 -92.71 -0.68 7.28 16 40 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.23 8.10 -2.39 -0.02 1.21 16 43 H 0.08 1.55 8.10 -2.39 -0.02 1.53 16 44 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 45 H 0.24 0.93 8.06 -2.91 -0.02 0.91 16 46 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 47 H 0.06 2.01 8.05 -2.39 -0.02 1.99 16 48 H 0.04 1.71 8.14 -2.38 -0.02 1.69 16 49 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 50 H 0.07 3.58 5.67 -2.39 -0.01 3.56 16 51 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 52 H 0.24 13.64 8.31 -92.71 -0.77 12.86 16 Total: -1.00 -70.16 402.87 1.63 -68.53 By element: Atomic # 1 Polarization: 26.34 SS G_CDS: -0.57 Total: 25.77 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: 7.88 Total: -0.50 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -7.67 Total: -121.02 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: -0.05 Total: -18.31 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -70.16 1.63 -68.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264030344.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.961 kcal (2) G-P(sol) polarization free energy of solvation -70.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds