Wall clock time and date at job start Wed Apr 1 2020 04:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34859 * 125.96363 * 2 1 4 4 N 1.36315 * 106.68873 * 180.09885 * 3 2 1 5 5 C 1.35420 * 107.39787 * 359.68338 * 4 3 2 6 6 N 1.30093 * 108.63292 * 0.14995 * 5 4 3 7 7 C 1.51042 * 123.97869 * 180.10955 * 5 4 3 8 8 C 1.53391 * 108.21475 * 344.06234 * 7 5 4 9 9 H 1.09008 * 109.55059 * 288.86710 * 8 7 5 10 10 C 1.50697 * 109.51525 * 168.74821 * 8 7 5 11 11 O 1.21284 * 120.00202 * 240.24123 * 10 8 7 12 12 N 1.34778 * 119.99821 * 60.23803 * 10 8 7 13 13 C 1.46507 * 120.00047 * 174.56543 * 12 10 8 14 14 C 1.52999 * 110.43260 * 302.95305 * 13 12 10 15 15 N 1.46503 * 109.47095 * 307.76424 * 14 13 12 16 16 C 1.36934 * 120.00067 * 174.95867 * 15 14 13 17 17 H 1.08001 * 119.99907 * 359.97438 * 16 15 14 18 18 C 1.38810 * 120.00442 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99627 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00470 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46890 * 89.99636 * 20 18 16 22 22 H 1.48497 * 109.47480 * 209.99483 * 20 18 16 23 23 H 1.48497 * 109.47015 * 330.00054 * 20 18 16 24 24 C 1.54887 * 110.48358 * 180.41011 * 13 12 10 25 25 C 1.55229 * 102.58998 * 279.18586 * 24 13 12 26 26 C 1.54272 * 104.23277 * 322.08542 * 25 24 13 27 27 C 1.53869 * 106.59620 * 23.61280 * 26 25 24 28 28 C 1.53150 * 109.23662 * 48.81901 * 8 7 5 29 29 C 1.46470 * 127.77720 * 179.97438 * 4 3 2 30 30 H 1.09004 * 109.47022 * 270.28453 * 1 2 3 31 31 H 1.08999 * 109.47181 * 30.28253 * 1 2 3 32 32 H 1.09004 * 109.47116 * 150.28273 * 1 2 3 33 33 H 1.07995 * 126.65319 * 359.97285 * 3 2 1 34 34 H 1.09000 * 109.71207 * 224.38299 * 7 5 4 35 35 H 1.09005 * 109.75398 * 103.76780 * 7 5 4 36 36 H 0.97005 * 120.00206 * 354.56022 * 12 10 8 37 37 H 1.08999 * 109.46786 * 67.76008 * 14 13 12 38 38 H 1.08996 * 109.47159 * 187.76625 * 14 13 12 39 39 H 0.96998 * 119.99763 * 354.95572 * 15 14 13 40 40 H 0.97001 * 120.00113 * 180.02562 * 19 18 16 41 41 H 1.09002 * 110.75961 * 37.57954 * 24 13 12 42 42 H 1.09002 * 110.75359 * 160.94755 * 24 13 12 43 43 H 1.09006 * 110.47135 * 203.39985 * 25 24 13 44 44 H 1.09001 * 110.58270 * 80.83228 * 25 24 13 45 45 H 1.08993 * 110.03286 * 264.32723 * 26 25 24 46 46 H 1.09006 * 110.07027 * 142.91801 * 26 25 24 47 47 H 1.09003 * 110.03573 * 240.71346 * 27 26 25 48 48 H 1.08997 * 110.07601 * 119.30600 * 27 26 25 49 49 H 1.09000 * 109.46863 * 170.50457 * 28 8 7 50 50 H 1.08998 * 109.46650 * 50.51921 * 28 8 7 51 51 H 1.08993 * 109.58621 * 282.37432 * 29 4 3 52 52 H 1.09003 * 109.58490 * 42.78848 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6416 -0.0023 5 6 3.5414 -0.7119 0.0036 6 7 2.2957 -1.0870 0.0059 7 6 4.7656 -1.5966 0.0057 8 6 5.9743 -0.7436 -0.3996 9 1 5.9069 -0.4955 -1.4589 10 6 7.2433 -1.5148 -0.1432 11 8 8.0736 -1.0781 0.6255 12 7 7.4557 -2.6900 -0.7681 13 6 8.7379 -3.3813 -0.6122 14 6 9.8904 -2.4737 -1.0467 15 7 9.6230 -1.9541 -2.3901 16 6 10.4691 -1.0340 -2.9493 17 1 11.3333 -0.6911 -2.3998 18 6 10.2155 -0.5412 -4.2220 19 7 9.1620 -0.9588 -4.8915 20 14 11.3693 0.7144 -4.9845 21 1 12.4372 0.0109 -5.7395 22 1 10.6059 1.5915 -5.9080 23 1 11.9822 1.5387 -3.9121 24 6 8.7468 -4.6975 -1.4287 25 6 7.9818 -5.6775 -0.4993 26 6 8.4504 -5.2975 0.9206 27 6 8.9311 -3.8376 0.8487 28 6 5.9828 0.5449 0.4281 29 6 4.8148 1.4382 -0.0037 30 1 -0.3633 0.0051 1.0277 31 1 -0.3633 0.8874 -0.5182 32 1 -0.3633 -0.8925 -0.5095 33 1 1.9763 2.1222 -0.0004 34 1 4.6330 -2.4094 -0.7083 35 1 4.9225 -2.0060 1.0037 36 1 6.7595 -3.0780 -1.3210 37 1 9.9819 -1.6427 -0.3473 38 1 10.8188 -3.0447 -1.0562 39 1 8.8466 -2.2618 -2.8835 40 1 8.9850 -0.6147 -5.7809 41 1 8.2211 -4.5687 -2.3749 42 1 9.7675 -5.0411 -1.5964 43 1 8.2523 -6.7086 -0.7270 44 1 6.9053 -5.5362 -0.5963 45 1 9.2705 -5.9459 1.2291 46 1 7.6219 -5.3837 1.6236 47 1 9.9845 -3.7774 1.1224 48 1 8.3360 -3.2145 1.5163 49 1 6.9227 1.0733 0.2681 50 1 5.8800 0.2986 1.4849 51 1 5.0002 1.8221 -1.0067 52 1 4.7126 2.2689 0.6946 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267838782.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:45 Heat of formation + Delta-G solvation = 18.633481 kcal Electronic energy + Delta-G solvation = -31895.935237 eV Core-core repulsion = 27895.615127 eV Total energy + Delta-G solvation = -4000.320110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.40243 -40.19374 -37.98711 -36.11800 -34.32182 -33.61417 -32.81097 -31.60252 -31.01384 -29.08022 -28.60929 -28.10597 -27.12197 -24.55456 -24.16488 -23.11915 -22.19358 -20.79059 -20.37787 -20.03830 -19.15463 -18.91189 -17.10363 -17.01166 -16.86560 -15.92304 -15.80677 -15.17059 -14.85937 -14.64929 -14.42533 -14.21527 -14.08227 -13.86327 -13.71778 -13.61921 -13.18188 -13.05905 -12.87551 -12.68014 -12.46834 -12.39573 -12.12410 -11.83741 -11.72873 -11.45163 -11.34438 -11.18553 -11.11674 -11.03642 -10.89819 -10.83896 -10.71386 -10.37620 -10.31141 -10.03198 -9.96763 -9.69915 -9.53611 -9.32730 -8.80362 -8.54200 -8.23277 -6.86371 -5.75556 -3.01672 1.98977 2.71704 2.97505 3.03557 3.41989 3.43870 3.48890 3.50214 4.14589 4.40039 4.51194 4.53921 4.58708 4.74723 4.82565 4.89249 5.00488 5.03903 5.08110 5.12940 5.19045 5.27463 5.40189 5.52356 5.56520 5.59748 5.61201 5.62408 5.63008 5.70305 5.77724 5.79159 5.88213 5.94105 5.94692 5.98748 6.03676 6.05270 6.21180 6.29908 6.30816 6.36536 6.44722 6.56891 6.60906 6.74617 6.91075 7.12194 7.12791 7.72713 7.90415 8.08601 8.44031 8.62334 9.55635 10.14006 10.50191 11.47424 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.008657 B = 0.003682 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3233.620791 B = 7602.409608 C = 9717.772318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.008 4.008 3 C -0.056 4.056 4 N -0.452 5.452 5 C 0.216 3.784 6 N -0.487 5.487 7 C -0.022 4.022 8 C -0.114 4.114 9 H 0.109 0.891 10 C 0.536 3.464 11 O -0.531 6.531 12 N -0.705 5.705 13 C 0.170 3.830 14 C 0.145 3.855 15 N -0.725 5.725 16 C -0.229 4.229 17 H 0.068 0.932 18 C -0.016 4.016 19 N -0.936 5.936 20 Si 0.903 3.097 21 H -0.291 1.291 22 H -0.293 1.293 23 H -0.283 1.283 24 C -0.120 4.120 25 C -0.125 4.125 26 C -0.122 4.122 27 C -0.123 4.123 28 C -0.112 4.112 29 C 0.102 3.898 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.172 0.828 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.396 0.604 37 H 0.045 0.955 38 H 0.020 0.980 39 H 0.382 0.618 40 H 0.253 0.747 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.073 0.927 49 H 0.104 0.896 50 H 0.078 0.922 51 H 0.090 0.910 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.764 -2.066 12.012 17.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.137 4.137 3 C -0.189 4.189 4 N -0.135 5.135 5 C -0.047 4.047 6 N -0.207 5.207 7 C -0.061 4.061 8 C -0.136 4.136 9 H 0.127 0.873 10 C 0.321 3.679 11 O -0.407 6.407 12 N -0.355 5.355 13 C 0.084 3.916 14 C 0.017 3.983 15 N -0.369 5.369 16 C -0.360 4.360 17 H 0.086 0.914 18 C -0.211 4.211 19 N -0.585 5.585 20 Si 0.735 3.265 21 H -0.218 1.218 22 H -0.219 1.219 23 H -0.209 1.209 24 C -0.157 4.157 25 C -0.163 4.163 26 C -0.160 4.160 27 C -0.162 4.162 28 C -0.150 4.150 29 C -0.020 4.020 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.189 0.811 34 H 0.117 0.883 35 H 0.110 0.890 36 H 0.230 0.770 37 H 0.062 0.938 38 H 0.037 0.963 39 H 0.215 0.785 40 H 0.063 0.937 41 H 0.094 0.906 42 H 0.101 0.899 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.077 0.923 47 H 0.089 0.911 48 H 0.092 0.908 49 H 0.123 0.877 50 H 0.097 0.903 51 H 0.108 0.892 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.144 -2.314 12.546 17.614 hybrid contribution 0.344 1.476 -1.126 1.888 sum -11.799 -0.839 11.420 16.443 Atomic orbital electron populations 1.19976 0.87834 1.02454 1.01860 1.20771 0.96383 0.88377 1.08218 1.22288 0.82957 1.00335 1.13346 1.45399 1.06641 1.07497 1.53954 1.23069 0.94594 0.81662 1.05351 1.69935 0.99643 1.30401 1.20691 1.20119 0.86382 0.95603 1.04009 1.21449 0.93164 0.95794 1.03156 0.87337 1.19872 0.87255 0.80706 0.80024 1.90661 1.46132 1.68111 1.35837 1.45796 1.16774 1.22231 1.50719 1.21369 0.83989 0.91865 0.94393 1.21059 0.92960 0.95421 0.88854 1.42196 1.31080 1.50399 1.13196 1.19226 1.04075 1.15112 0.97629 0.91447 1.24662 0.98274 1.00839 0.97327 1.69645 1.28444 1.47495 1.12952 0.86231 0.80077 0.81204 0.78978 1.21845 1.21918 1.20881 1.22795 1.01774 0.93140 0.98034 1.22460 0.99837 0.99064 0.94932 1.22131 1.00303 0.96598 0.96981 1.22436 1.01957 0.95329 0.96484 1.21687 0.98192 0.94756 1.00410 1.22103 0.81837 0.94372 1.03685 0.91738 0.91568 0.91317 0.81075 0.88285 0.88965 0.77022 0.93753 0.96262 0.78465 0.93742 0.90577 0.89850 0.91841 0.91845 0.92126 0.92340 0.91144 0.90835 0.87739 0.90289 0.89210 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.42 36.00 0.38 -0.22 16 2 C -0.01 -0.11 7.10 -82.71 -0.59 -0.69 16 3 C -0.06 -0.64 11.55 -16.76 -0.19 -0.84 16 4 N -0.45 -5.49 3.13 -113.77 -0.36 -5.84 16 5 C 0.22 2.93 7.65 -155.24 -1.19 1.74 16 6 N -0.49 -7.27 11.24 -6.88 -0.08 -7.35 16 7 C -0.02 -0.26 5.44 -27.51 -0.15 -0.41 16 8 C -0.11 -1.47 2.56 -91.49 -0.23 -1.70 16 9 H 0.11 1.52 8.12 -51.92 -0.42 1.10 16 10 C 0.54 8.38 6.37 -10.99 -0.07 8.31 16 11 O -0.53 -9.91 12.79 5.55 0.07 -9.84 16 12 N -0.70 -10.31 4.47 -46.07 -0.21 -10.51 16 13 C 0.17 2.65 0.39 -130.16 -0.05 2.60 16 14 C 0.15 2.98 4.72 -4.04 -0.02 2.96 16 15 N -0.72 -17.75 5.30 -59.91 -0.32 -18.07 16 16 C -0.23 -6.37 9.99 -15.06 -0.15 -6.52 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 19 N -0.94 -27.55 13.06 55.49 0.72 -26.82 16 20 Si 0.90 22.44 29.55 -169.99 -5.02 17.42 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C -0.12 -1.66 5.67 -24.56 -0.14 -1.80 16 25 C -0.13 -1.39 6.80 -24.88 -0.17 -1.56 16 26 C -0.12 -1.38 6.80 -25.61 -0.17 -1.55 16 27 C -0.12 -1.71 5.68 -25.62 -0.15 -1.86 16 28 C -0.11 -1.33 4.67 -26.53 -0.12 -1.45 16 29 C 0.10 1.03 6.98 -3.93 -0.03 1.00 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.10 1.06 7.85 -51.93 -0.41 0.65 16 35 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 36 H 0.40 5.03 8.07 -40.82 -0.33 4.70 16 37 H 0.04 1.01 6.49 -51.93 -0.34 0.68 16 38 H 0.02 0.41 8.02 -51.93 -0.42 -0.01 16 39 H 0.38 9.60 7.27 -40.82 -0.30 9.31 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 42 H 0.08 1.21 7.97 -51.93 -0.41 0.80 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 1.00 7.84 -51.93 -0.41 0.59 16 48 H 0.07 1.10 6.62 -51.93 -0.34 0.76 16 49 H 0.10 1.36 7.79 -51.93 -0.40 0.96 16 50 H 0.08 0.93 8.12 -51.93 -0.42 0.51 16 51 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 52 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 407.00 15.07 6.13 6.13 Total: -1.00 -33.89 407.00 -11.01 -44.90 By element: Atomic # 1 Polarization: 21.33 SS G_CDS: -8.81 Total: 12.51 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -3.14 Total: -2.53 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -0.23 Total: -68.59 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.07 Total: -9.84 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -33.89 -11.01 -44.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267838782.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.533 kcal (2) G-P(sol) polarization free energy of solvation -33.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.899 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds