Wall clock time and date at job start Wed Apr 1 2020 03:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35325 * 126.12378 * 2 1 4 4 C 1.39868 * 107.91737 * 180.24396 * 3 2 1 5 5 C 1.50706 * 125.89484 * 179.73392 * 4 3 2 6 6 N 1.46907 * 109.46819 * 95.00036 * 5 4 3 7 7 C 1.46805 * 110.99873 * 45.30863 * 6 5 4 8 8 C 1.53270 * 109.44162 * 189.19550 * 7 6 5 9 9 C 1.53203 * 108.61953 * 304.39808 * 8 7 6 10 10 C 1.52766 * 117.80006 * 266.01976 * 9 8 7 11 11 C 1.52734 * 117.84580 * 197.01088 * 9 8 7 12 12 H 1.08997 * 117.50909 * 0.26986 * 11 9 8 13 13 C 1.50710 * 117.50298 * 215.21954 * 11 9 8 14 14 O 1.21279 * 119.99615 * 0.02562 * 13 11 9 15 15 N 1.34770 * 119.99879 * 179.97438 * 13 11 9 16 16 C 1.46496 * 120.00026 * 180.02562 * 15 13 11 17 17 C 1.53000 * 109.47319 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47125 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00256 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99791 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00403 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99772 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47604 * 89.99958 * 22 20 18 24 24 H 1.48507 * 109.46902 * 209.99692 * 22 20 18 25 25 H 1.48503 * 109.47210 * 329.99290 * 22 20 18 26 26 C 1.53214 * 114.73601 * 51.42598 * 9 8 7 27 27 C 1.46807 * 110.99598 * 169.99790 * 6 5 4 28 28 N 1.30842 * 108.20327 * 359.55203 * 4 3 2 29 29 N 1.34941 * 126.13067 * 179.97438 * 2 1 3 30 30 H 0.97002 * 126.04033 * 0.03671 * 29 2 1 31 31 H 1.09003 * 109.47341 * 90.00369 * 1 2 3 32 32 H 1.09003 * 109.46976 * 209.99873 * 1 2 3 33 33 H 1.08998 * 109.47342 * 330.00126 * 1 2 3 34 34 H 1.08002 * 126.03725 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.47007 * 214.99534 * 5 4 3 36 36 H 1.08995 * 109.47285 * 335.00314 * 5 4 3 37 37 H 1.09000 * 109.47873 * 309.18638 * 7 6 5 38 38 H 1.08996 * 109.47864 * 69.20841 * 7 6 5 39 39 H 1.09002 * 109.60611 * 184.65337 * 8 7 6 40 40 H 1.08997 * 109.60775 * 64.13822 * 8 7 6 41 41 H 1.09007 * 117.50105 * 359.63696 * 10 9 8 42 42 H 1.08993 * 117.51105 * 144.66484 * 10 9 8 43 43 H 0.96999 * 120.00568 * 0.02562 * 15 13 11 44 44 H 1.09002 * 109.47121 * 300.00221 * 16 15 13 45 45 H 1.08997 * 109.47165 * 60.00225 * 16 15 13 46 46 H 1.09002 * 109.46844 * 299.99482 * 17 16 15 47 47 H 1.08997 * 109.47566 * 59.99730 * 17 16 15 48 48 H 0.96998 * 120.00181 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.61184 * 188.83515 * 26 9 8 50 50 H 1.08993 * 109.61156 * 68.31441 * 26 9 8 51 51 H 1.08994 * 109.47722 * 290.79411 * 27 6 5 52 52 H 1.09001 * 109.47918 * 50.81436 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0931 0.0000 4 6 3.6334 0.6561 -0.0057 5 6 4.8542 1.5398 -0.0133 6 7 5.3283 1.7317 1.3638 7 6 5.3487 0.4590 2.0954 8 6 5.6242 0.7278 3.5789 9 6 6.9292 1.5215 3.6981 10 6 8.2209 0.7387 3.9268 11 6 7.6146 1.5667 5.0623 12 1 7.1409 1.0266 5.8819 13 6 8.3186 2.8430 5.4455 14 8 8.3254 3.7847 4.6812 15 7 8.9396 2.9382 6.6377 16 6 9.6235 4.1790 7.0105 17 6 10.2409 4.0230 8.4017 18 6 10.9438 5.2996 8.7853 19 1 10.9500 6.1382 8.1048 20 6 11.5790 5.3970 10.0051 21 7 11.5712 4.3760 10.8341 22 14 12.4497 6.9797 10.4810 23 1 11.4979 7.8761 11.1849 24 1 13.5906 6.6664 11.3786 25 1 12.9532 7.6548 9.2578 26 6 6.9995 2.7751 2.8200 27 6 6.6427 2.3854 1.3813 28 7 3.6334 -0.6523 0.0008 29 7 2.3026 -1.0899 0.0005 30 1 2.0056 -2.0133 0.0004 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.9739 2.1212 -0.0004 35 1 5.6392 1.0697 -0.6056 36 1 4.6003 2.5064 -0.4482 37 1 4.3838 -0.0368 1.9890 38 1 6.1327 -0.1806 1.6902 39 1 5.7219 -0.2190 4.1102 40 1 4.8041 1.3060 4.0044 41 1 8.1458 -0.3463 3.9995 42 1 9.1286 1.1166 3.4566 43 1 8.9339 2.1852 7.2492 44 1 10.4097 4.3922 6.2863 45 1 8.9066 4.9999 7.0208 46 1 9.4549 3.8096 9.1261 47 1 10.9578 3.2021 8.3911 48 1 12.0184 4.4445 11.6921 49 1 8.0090 3.1854 2.8483 50 1 6.2898 3.5175 3.1847 51 1 7.3952 1.6988 0.9935 52 1 6.6120 3.2801 0.7595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272545006.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:42 Heat of formation + Delta-G solvation = 55.957739 kcal Electronic energy + Delta-G solvation = -29617.343376 eV Core-core repulsion = 25618.641767 eV Total energy + Delta-G solvation = -3998.701608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68697 -40.28723 -38.49050 -36.36311 -34.72334 -33.24626 -32.80510 -31.84740 -30.99379 -30.16281 -29.41558 -27.42170 -26.09005 -25.21488 -23.46946 -23.26700 -22.10667 -20.95968 -20.86502 -19.92428 -19.69705 -18.60440 -17.68064 -16.84428 -16.39386 -16.19215 -15.29481 -15.15421 -15.05393 -14.92692 -14.67041 -14.50119 -14.29813 -14.11297 -13.83681 -13.60203 -13.27176 -13.22290 -13.13766 -12.90098 -12.75246 -12.56651 -12.28524 -12.11648 -12.05385 -11.74779 -11.55779 -11.18114 -11.14062 -11.01718 -10.91883 -10.62748 -10.55223 -10.31429 -9.91225 -9.79569 -9.68818 -9.65240 -9.35857 -8.98888 -8.92368 -8.50440 -8.38444 -8.30639 -6.07876 -4.10676 1.46837 2.35658 2.47216 2.87150 3.30599 3.36571 3.40557 3.63071 3.84577 3.98181 4.18150 4.33494 4.42848 4.59404 4.62900 4.72913 4.87140 4.87723 4.90955 4.95595 5.14047 5.22575 5.29147 5.31568 5.32258 5.37957 5.40511 5.46305 5.48692 5.52835 5.57767 5.69518 5.77129 5.79586 5.87545 5.97594 6.01972 6.16437 6.27085 6.34310 6.38107 6.39271 6.61091 6.77280 6.88785 6.92799 6.98981 7.03598 7.33280 7.54214 7.63997 7.90519 8.09409 8.30134 8.74623 8.95513 9.54109 11.03701 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029462 B = 0.001556 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.153181 B =17992.052102 C =18077.724495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.082 3.918 3 C -0.253 4.253 4 C 0.087 3.913 5 C 0.133 3.867 6 N -0.531 5.531 7 C 0.061 3.939 8 C -0.078 4.078 9 C -0.086 4.086 10 C -0.149 4.149 11 C -0.183 4.183 12 H 0.119 0.881 13 C 0.535 3.465 14 O -0.545 6.545 15 N -0.719 5.719 16 C 0.122 3.878 17 C 0.012 3.988 18 C -0.521 4.521 19 H 0.059 0.941 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.272 1.272 26 C -0.072 4.072 27 C 0.057 3.943 28 N -0.291 5.291 29 N -0.476 5.476 30 H 0.436 0.564 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.148 0.852 35 H 0.048 0.952 36 H 0.095 0.905 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.065 0.935 40 H 0.075 0.925 41 H 0.099 0.901 42 H 0.098 0.902 43 H 0.397 0.603 44 H 0.055 0.945 45 H 0.056 0.944 46 H 0.022 0.978 47 H 0.022 0.978 48 H 0.262 0.738 49 H 0.097 0.903 50 H 0.075 0.925 51 H 0.033 0.967 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.344 -13.549 -23.289 34.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.046 4.046 3 C -0.283 4.283 4 C -0.080 4.080 5 C 0.004 3.996 6 N -0.257 5.257 7 C -0.067 4.067 8 C -0.116 4.116 9 C -0.087 4.087 10 C -0.187 4.187 11 C -0.204 4.204 12 H 0.137 0.863 13 C 0.321 3.679 14 O -0.424 6.424 15 N -0.368 5.368 16 C 0.000 4.000 17 C -0.025 4.025 18 C -0.560 4.560 19 H 0.077 0.923 20 C -0.143 4.143 21 N -0.533 5.533 22 Si 0.724 3.276 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.110 4.110 27 C -0.070 4.070 28 N -0.116 5.116 29 N -0.185 5.185 30 H 0.280 0.720 31 H 0.098 0.902 32 H 0.089 0.911 33 H 0.106 0.894 34 H 0.166 0.834 35 H 0.066 0.934 36 H 0.114 0.886 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.117 0.883 42 H 0.116 0.884 43 H 0.231 0.769 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.040 0.960 47 H 0.040 0.960 48 H 0.071 0.929 49 H 0.115 0.885 50 H 0.094 0.906 51 H 0.051 0.949 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.851 -13.612 -23.407 34.175 hybrid contribution 0.382 -0.016 0.513 0.640 sum -20.469 -13.628 -22.894 33.598 Atomic orbital electron populations 1.20463 0.87216 1.04089 1.03392 1.21134 0.94631 0.87752 1.01128 1.21156 0.91457 0.99308 1.16368 1.22106 0.95785 0.91274 0.98804 1.20496 0.91199 0.97229 0.90691 1.61911 1.27530 1.23867 1.12402 1.22130 1.01290 0.89884 0.93356 1.21235 0.95605 0.98825 0.95890 1.21474 0.93053 0.98703 0.95439 1.23065 0.97690 0.97930 0.99979 1.22347 1.05489 0.98465 0.94125 0.86317 1.19598 0.78582 0.87955 0.81781 1.90615 1.61420 1.39730 1.50671 1.46301 1.54276 1.18236 1.17994 1.21702 0.95135 0.84005 0.99131 1.19327 0.95947 0.98110 0.89166 1.21059 1.33850 0.99050 1.02048 0.92257 1.24996 0.96268 0.96642 0.96374 1.69955 1.43806 1.30326 1.09225 0.86515 0.79209 0.83351 0.78494 1.20561 1.21178 1.19729 1.21400 1.04116 0.94515 0.90940 1.22250 0.87815 0.98234 0.98718 1.77352 0.96295 1.12637 1.25270 1.46289 1.04068 1.08210 1.59948 0.72027 0.90162 0.91120 0.89380 0.83382 0.93390 0.88640 0.90275 0.94820 0.91589 0.90661 0.88282 0.88361 0.76942 0.92662 0.92597 0.95967 0.95964 0.92871 0.88477 0.90636 0.94900 0.90586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.29 10.43 36.00 0.38 0.08 16 2 C 0.08 0.56 7.21 -82.27 -0.59 -0.04 16 3 C -0.25 -2.15 10.65 -40.01 -0.43 -2.57 16 4 C 0.09 0.85 5.19 -82.40 -0.43 0.42 16 5 C 0.13 1.23 5.83 -4.97 -0.03 1.20 16 6 N -0.53 -5.64 4.73 -235.89 -1.12 -6.76 16 7 C 0.06 0.66 4.99 -3.74 -0.02 0.64 16 8 C -0.08 -0.84 5.87 -26.49 -0.16 -0.99 16 9 C -0.09 -1.04 2.02 -154.55 -0.31 -1.35 16 10 C -0.15 -1.71 9.62 -26.83 -0.26 -1.97 16 11 C -0.18 -2.39 5.92 -91.88 -0.54 -2.94 16 12 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 13 C 0.53 9.15 7.59 -10.98 -0.08 9.06 16 14 O -0.55 -10.82 13.13 5.56 0.07 -10.74 16 15 N -0.72 -12.84 5.56 -60.30 -0.33 -13.17 16 16 C 0.12 2.64 5.61 -4.04 -0.02 2.62 16 17 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 18 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 19 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -26.30 13.29 55.43 0.74 -25.56 16 22 Si 0.90 21.52 29.54 -169.99 -5.02 16.49 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 26 C -0.07 -0.95 4.32 -26.48 -0.11 -1.07 16 27 C 0.06 0.62 5.45 -3.74 -0.02 0.60 16 28 N -0.29 -2.98 11.32 33.67 0.38 -2.60 16 29 N -0.48 -3.50 7.36 33.48 0.25 -3.25 16 30 H 0.44 1.89 8.96 -182.61 -1.64 0.25 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.07 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.09 0.24 8.14 -51.93 -0.42 -0.19 16 34 H 0.15 1.06 8.06 -52.49 -0.42 0.64 16 35 H 0.05 0.44 8.08 -51.93 -0.42 0.02 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.90 5.55 -51.93 -0.29 0.62 16 38 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.07 0.63 8.08 -51.93 -0.42 0.21 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 43 H 0.40 6.24 8.47 -40.82 -0.35 5.90 16 44 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 46 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 49 H 0.10 1.48 6.00 -51.93 -0.31 1.17 16 50 H 0.08 1.12 8.12 -51.93 -0.42 0.70 16 51 H 0.03 0.35 8.12 -51.93 -0.42 -0.07 16 52 H 0.08 0.75 8.09 -51.93 -0.42 0.33 16 LS Contribution 416.00 15.07 6.27 6.27 Total: -1.00 -33.25 416.00 -12.09 -45.34 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -10.14 Total: 3.47 kcal Atomic # 6 Polarization: -6.31 SS G_CDS: -3.18 Total: -9.49 kcal Atomic # 7 Polarization: -51.26 SS G_CDS: -0.09 Total: -51.34 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.07 Total: -10.74 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -33.25 -12.09 -45.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272545006.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.300 kcal (2) G-P(sol) polarization free energy of solvation -33.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds