Wall clock time and date at job start Wed Apr 1 2020 03:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35325 * 126.12378 * 2 1 4 4 C 1.39868 * 107.91737 * 180.24396 * 3 2 1 5 5 C 1.50706 * 125.89484 * 179.73392 * 4 3 2 6 6 N 1.46907 * 109.46819 * 95.00036 * 5 4 3 7 7 C 1.46805 * 110.99873 * 45.30863 * 6 5 4 8 8 C 1.53270 * 109.44162 * 189.19550 * 7 6 5 9 9 C 1.53203 * 108.61953 * 304.39808 * 8 7 6 10 10 C 1.52766 * 117.80006 * 266.01976 * 9 8 7 11 11 C 1.52734 * 117.84580 * 197.01088 * 9 8 7 12 12 H 1.08997 * 117.50909 * 0.26986 * 11 9 8 13 13 C 1.50710 * 117.50298 * 215.21954 * 11 9 8 14 14 O 1.21279 * 119.99615 * 0.02562 * 13 11 9 15 15 N 1.34770 * 119.99879 * 179.97438 * 13 11 9 16 16 C 1.46496 * 120.00026 * 180.02562 * 15 13 11 17 17 C 1.53000 * 109.47319 * 180.02562 * 16 15 13 18 18 C 1.50703 * 109.47125 * 180.02562 * 17 16 15 19 19 H 1.07995 * 120.00256 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99791 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00403 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99772 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47604 * 89.99958 * 22 20 18 24 24 H 1.48507 * 109.46902 * 209.99692 * 22 20 18 25 25 H 1.48503 * 109.47210 * 329.99290 * 22 20 18 26 26 C 1.53214 * 114.73601 * 51.42598 * 9 8 7 27 27 C 1.46807 * 110.99598 * 169.99790 * 6 5 4 28 28 N 1.30842 * 108.20327 * 359.55203 * 4 3 2 29 29 N 1.34941 * 126.13067 * 179.97438 * 2 1 3 30 30 H 0.97002 * 126.04033 * 0.03671 * 29 2 1 31 31 H 1.09003 * 109.47341 * 90.00369 * 1 2 3 32 32 H 1.09003 * 109.46976 * 209.99873 * 1 2 3 33 33 H 1.08998 * 109.47342 * 330.00126 * 1 2 3 34 34 H 1.08002 * 126.03725 * 359.97438 * 3 2 1 35 35 H 1.08995 * 109.47007 * 214.99534 * 5 4 3 36 36 H 1.08995 * 109.47285 * 335.00314 * 5 4 3 37 37 H 1.09000 * 109.47873 * 309.18638 * 7 6 5 38 38 H 1.08996 * 109.47864 * 69.20841 * 7 6 5 39 39 H 1.09002 * 109.60611 * 184.65337 * 8 7 6 40 40 H 1.08997 * 109.60775 * 64.13822 * 8 7 6 41 41 H 1.09007 * 117.50105 * 359.63696 * 10 9 8 42 42 H 1.08993 * 117.51105 * 144.66484 * 10 9 8 43 43 H 0.96999 * 120.00568 * 0.02562 * 15 13 11 44 44 H 1.09002 * 109.47121 * 300.00221 * 16 15 13 45 45 H 1.08997 * 109.47165 * 60.00225 * 16 15 13 46 46 H 1.09002 * 109.46844 * 299.99482 * 17 16 15 47 47 H 1.08997 * 109.47566 * 59.99730 * 17 16 15 48 48 H 0.96998 * 120.00181 * 179.97438 * 21 20 18 49 49 H 1.09002 * 109.61184 * 188.83515 * 26 9 8 50 50 H 1.08993 * 109.61156 * 68.31441 * 26 9 8 51 51 H 1.08994 * 109.47722 * 290.79411 * 27 6 5 52 52 H 1.09001 * 109.47918 * 50.81436 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3047 1.0931 0.0000 4 6 3.6334 0.6561 -0.0057 5 6 4.8542 1.5398 -0.0133 6 7 5.3283 1.7317 1.3638 7 6 5.3487 0.4590 2.0954 8 6 5.6242 0.7278 3.5789 9 6 6.9292 1.5215 3.6981 10 6 8.2209 0.7387 3.9268 11 6 7.6146 1.5667 5.0623 12 1 7.1409 1.0266 5.8819 13 6 8.3186 2.8430 5.4455 14 8 8.3254 3.7847 4.6812 15 7 8.9396 2.9382 6.6377 16 6 9.6235 4.1790 7.0105 17 6 10.2409 4.0230 8.4017 18 6 10.9438 5.2996 8.7853 19 1 10.9500 6.1382 8.1048 20 6 11.5790 5.3970 10.0051 21 7 11.5712 4.3760 10.8341 22 14 12.4497 6.9797 10.4810 23 1 11.4979 7.8761 11.1849 24 1 13.5906 6.6664 11.3786 25 1 12.9532 7.6548 9.2578 26 6 6.9995 2.7751 2.8200 27 6 6.6427 2.3854 1.3813 28 7 3.6334 -0.6523 0.0008 29 7 2.3026 -1.0899 0.0005 30 1 2.0056 -2.0133 0.0004 31 1 -0.3634 -0.0001 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5138 34 1 1.9739 2.1212 -0.0004 35 1 5.6392 1.0697 -0.6056 36 1 4.6003 2.5064 -0.4482 37 1 4.3838 -0.0368 1.9890 38 1 6.1327 -0.1806 1.6902 39 1 5.7219 -0.2190 4.1102 40 1 4.8041 1.3060 4.0044 41 1 8.1458 -0.3463 3.9995 42 1 9.1286 1.1166 3.4566 43 1 8.9339 2.1852 7.2492 44 1 10.4097 4.3922 6.2863 45 1 8.9066 4.9999 7.0208 46 1 9.4549 3.8096 9.1261 47 1 10.9578 3.2021 8.3911 48 1 12.0184 4.4445 11.6921 49 1 8.0090 3.1854 2.8483 50 1 6.2898 3.5175 3.1847 51 1 7.3952 1.6988 0.9935 52 1 6.6120 3.2801 0.7595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272545006.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:41 Heat of formation + Delta-G solvation = 33.790578 kcal Electronic energy + Delta-G solvation = -29618.304616 eV Core-core repulsion = 25618.641767 eV Total energy + Delta-G solvation = -3999.662848 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.28942 -41.43863 -39.63742 -37.40559 -36.40887 -34.80843 -33.85362 -32.44729 -31.89455 -31.67218 -30.62249 -27.85547 -27.30032 -26.62881 -24.80447 -24.28446 -23.10027 -22.63265 -21.50630 -21.08821 -20.56668 -19.57025 -18.60592 -18.22650 -17.90599 -17.21854 -16.54702 -16.48579 -16.34150 -16.02724 -15.74409 -15.69522 -15.39374 -14.85121 -14.80783 -14.57012 -14.38976 -14.26093 -14.07309 -13.93048 -13.75079 -13.46375 -13.24446 -13.16262 -13.00786 -12.93610 -12.76882 -12.59079 -12.57392 -12.48579 -12.25514 -12.06229 -11.64995 -11.55633 -11.49707 -11.40441 -10.93078 -10.79394 -10.60685 -10.38593 -10.31507 -9.96511 -9.51223 -9.20952 -8.24413 -6.35156 0.89086 1.41552 1.42118 1.53625 1.56487 1.72321 1.97662 2.24340 2.44822 2.82416 3.10196 3.11563 3.58320 3.63498 3.71397 3.82357 3.87178 3.94876 4.11291 4.18193 4.31920 4.38763 4.39858 4.48579 4.50607 4.53848 4.59816 4.63099 4.66078 4.77547 4.81355 4.84811 4.85279 4.90271 4.90748 4.97383 5.03539 5.09640 5.13800 5.19046 5.28002 5.31233 5.36495 5.48137 5.57600 5.58904 5.66803 5.79015 6.10143 6.15690 6.16219 6.45949 6.68238 6.73075 6.78111 7.34227 7.34785 8.87374 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.029462 B = 0.001556 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.153181 B =17992.052102 C =18077.724495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.093 3.907 3 C -0.279 4.279 4 C 0.074 3.926 5 C 0.134 3.866 6 N -0.538 5.538 7 C 0.069 3.931 8 C -0.071 4.071 9 C -0.087 4.087 10 C -0.133 4.133 11 C -0.189 4.189 12 H 0.143 0.857 13 C 0.532 3.468 14 O -0.576 6.576 15 N -0.717 5.717 16 C 0.143 3.857 17 C 0.022 3.978 18 C -0.548 4.548 19 H 0.058 0.942 20 C 0.008 3.992 21 N -0.926 5.926 22 Si 0.966 3.034 23 H -0.272 1.272 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.068 4.068 27 C 0.065 3.935 28 N -0.323 5.323 29 N -0.471 5.471 30 H 0.448 0.552 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.094 0.906 34 H 0.156 0.844 35 H 0.046 0.954 36 H 0.107 0.893 37 H 0.075 0.925 38 H 0.030 0.970 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.128 0.872 42 H 0.089 0.911 43 H 0.409 0.591 44 H 0.045 0.955 45 H 0.044 0.956 46 H 0.008 0.992 47 H 0.008 0.992 48 H 0.266 0.734 49 H 0.073 0.927 50 H 0.052 0.948 51 H 0.036 0.964 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.612 -14.474 -23.910 35.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.037 4.037 3 C -0.309 4.309 4 C -0.091 4.091 5 C 0.006 3.994 6 N -0.264 5.264 7 C -0.059 4.059 8 C -0.109 4.109 9 C -0.088 4.088 10 C -0.170 4.170 11 C -0.209 4.209 12 H 0.161 0.839 13 C 0.320 3.680 14 O -0.457 6.457 15 N -0.367 5.367 16 C 0.019 3.981 17 C -0.015 4.015 18 C -0.586 4.586 19 H 0.076 0.924 20 C -0.191 4.191 21 N -0.566 5.566 22 Si 0.790 3.210 23 H -0.197 1.197 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.106 4.106 27 C -0.063 4.063 28 N -0.148 5.148 29 N -0.182 5.182 30 H 0.294 0.706 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.173 0.827 35 H 0.064 0.936 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.048 0.952 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.146 0.854 42 H 0.107 0.893 43 H 0.244 0.756 44 H 0.063 0.937 45 H 0.063 0.937 46 H 0.026 0.974 47 H 0.026 0.974 48 H 0.075 0.925 49 H 0.091 0.909 50 H 0.071 0.929 51 H 0.054 0.946 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -22.132 -14.572 -24.037 35.777 hybrid contribution 0.708 0.247 0.658 0.997 sum -21.425 -14.325 -23.380 34.797 Atomic orbital electron populations 1.20595 0.84477 1.05214 1.04622 1.21656 0.96172 0.86969 0.98871 1.21401 0.91344 1.00349 1.17768 1.22203 0.96358 0.91365 0.99206 1.20522 0.91202 0.97927 0.89793 1.61890 1.27111 1.23943 1.13417 1.22032 1.00840 0.89761 0.93241 1.21216 0.94283 0.99264 0.96113 1.21534 0.94308 0.98584 0.94342 1.23161 0.96766 0.99205 0.97867 1.22325 1.06205 0.96937 0.95478 0.83885 1.20303 0.77883 0.89078 0.80754 1.90616 1.62358 1.41303 1.51390 1.46148 1.54325 1.17356 1.18871 1.21181 0.94602 0.85454 0.96863 1.19136 0.95029 0.96695 0.90654 1.21473 1.34540 1.00075 1.02557 0.92351 1.25874 0.96884 1.00124 0.96246 1.70059 1.44522 1.32315 1.09669 0.85439 0.78141 0.79110 0.78318 1.19744 1.20438 1.19078 1.21220 1.01982 0.94598 0.92756 1.22131 0.88194 0.98746 0.97210 1.77268 0.97986 1.12958 1.26608 1.46339 1.03401 1.09126 1.59308 0.70633 0.88742 0.89530 0.88711 0.82673 0.93581 0.87455 0.90695 0.95216 0.89649 0.91467 0.85422 0.89280 0.75574 0.93693 0.93726 0.97409 0.97367 0.92541 0.90870 0.92901 0.94607 0.89749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.34 10.43 71.23 0.74 0.40 16 2 C 0.09 1.11 7.21 41.41 0.30 1.40 16 3 C -0.28 -4.47 10.65 21.99 0.23 -4.23 16 4 C 0.07 1.41 5.19 43.10 0.22 1.63 16 5 C 0.13 2.42 5.83 85.56 0.50 2.92 16 6 N -0.54 -11.12 4.73 -900.20 -4.26 -15.38 16 7 C 0.07 1.41 4.99 86.41 0.43 1.85 16 8 C -0.07 -1.42 5.87 30.75 0.18 -1.23 16 9 C -0.09 -2.02 2.02 -52.21 -0.11 -2.12 16 10 C -0.13 -2.80 9.62 30.53 0.29 -2.50 16 11 C -0.19 -4.68 5.92 -11.61 -0.07 -4.75 16 12 H 0.14 2.87 8.14 -2.39 -0.02 2.85 16 13 C 0.53 18.21 7.59 87.66 0.67 18.88 16 14 O -0.58 -23.43 13.13 -3.02 -0.04 -23.47 16 15 N -0.72 -25.73 5.56 -463.07 -2.57 -28.30 16 16 C 0.14 6.31 5.61 86.38 0.48 6.79 16 17 C 0.02 1.15 5.09 29.85 0.15 1.30 16 18 C -0.55 -31.11 9.11 25.60 0.23 -30.87 16 19 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 20 C 0.01 0.43 5.46 84.65 0.46 0.89 16 21 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 22 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 26 C -0.07 -1.81 4.32 30.75 0.13 -1.68 16 27 C 0.06 1.39 5.45 86.41 0.47 1.86 16 28 N -0.32 -6.37 11.32 -47.38 -0.54 -6.91 16 29 N -0.47 -6.28 7.36 -48.00 -0.35 -6.63 16 30 H 0.45 3.19 8.96 -213.33 -1.91 1.27 16 31 H 0.09 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.09 0.08 8.14 -2.39 -0.02 0.06 16 33 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 34 H 0.16 2.10 8.06 -2.91 -0.02 2.07 16 35 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 36 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.64 5.55 -2.39 -0.01 1.62 16 38 H 0.03 0.63 8.12 -2.39 -0.02 0.61 16 39 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 40 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.13 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.41 12.73 8.47 -92.71 -0.79 11.94 16 44 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 45 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 48 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 49 H 0.07 2.31 6.00 -2.39 -0.01 2.30 16 50 H 0.05 1.63 8.12 -2.39 -0.02 1.61 16 51 H 0.04 0.75 8.12 -2.39 -0.02 0.73 16 52 H 0.08 1.64 8.09 -2.39 -0.02 1.62 16 Total: -1.00 -72.31 416.00 -1.89 -74.20 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: -1.77 Total: 24.40 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: 5.33 Total: -9.47 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -7.43 Total: -111.71 kcal Atomic # 8 Polarization: -23.43 SS G_CDS: -0.04 Total: -23.47 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -72.31 -1.89 -74.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272545006.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.991 kcal (2) G-P(sol) polarization free energy of solvation -72.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.200 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds