Wall clock time and date at job start Wed Apr 1 2020 03:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35320 * 126.12550 * 2 1 4 4 C 1.39868 * 107.92193 * 180.15017 * 3 2 1 5 5 C 1.50694 * 125.89716 * 179.86826 * 4 3 2 6 6 N 1.46897 * 109.47527 * 94.71360 * 5 4 3 7 7 C 1.46856 * 111.00487 * 169.99827 * 6 5 4 8 8 C 1.53146 * 109.45272 * 186.35530 * 7 6 5 9 9 C 1.52540 * 109.31060 * 301.73506 * 8 7 6 10 10 C 1.54130 * 110.08214 * 178.12571 * 9 8 7 11 11 C 1.54588 * 101.65494 * 94.64511 * 10 9 8 12 12 N 1.46821 * 105.49285 * 24.98079 * 11 10 9 13 13 C 1.46504 * 124.36003 * 163.05640 * 12 11 10 14 14 C 1.53001 * 109.46756 * 89.99736 * 13 12 11 15 15 C 1.50706 * 109.47007 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99898 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00150 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47492 * 89.99714 * 19 17 15 21 21 H 1.48495 * 109.47117 * 210.00131 * 19 17 15 22 22 H 1.48503 * 109.46784 * 329.99810 * 19 17 15 23 23 C 1.34566 * 111.28067 * 343.08114 * 12 11 10 24 24 O 1.21278 * 125.03137 * 180.68113 * 23 12 11 25 25 C 1.52535 * 110.49828 * 56.31363 * 9 8 7 26 26 C 1.46862 * 111.00026 * 294.35693 * 6 5 4 27 27 N 1.30831 * 108.20073 * 359.59875 * 4 3 2 28 28 N 1.34945 * 126.12878 * 179.71376 * 2 1 3 29 29 H 0.97000 * 126.03944 * 359.97438 * 28 2 1 30 30 H 1.08999 * 109.46842 * 270.26368 * 1 2 3 31 31 H 1.08998 * 109.47413 * 30.26859 * 1 2 3 32 32 H 1.09004 * 109.47050 * 150.26406 * 1 2 3 33 33 H 1.08005 * 126.03653 * 0.02963 * 3 2 1 34 34 H 1.08996 * 109.47354 * 334.70860 * 5 4 3 35 35 H 1.09002 * 109.47066 * 214.71078 * 5 4 3 36 36 H 1.09003 * 109.47352 * 66.35613 * 7 6 5 37 37 H 1.09007 * 109.47138 * 306.34768 * 7 6 5 38 38 H 1.08999 * 109.49962 * 61.68719 * 8 7 6 39 39 H 1.09004 * 109.49132 * 181.78514 * 8 7 6 40 40 H 1.09003 * 110.98940 * 212.73499 * 10 9 8 41 41 H 1.08998 * 110.99171 * 336.55612 * 10 9 8 42 42 H 1.08999 * 110.24457 * 143.98617 * 11 10 9 43 43 H 1.09002 * 110.24093 * 265.88774 * 11 10 9 44 44 H 1.08993 * 109.47493 * 210.00021 * 13 12 11 45 45 H 1.09006 * 109.47118 * 330.00314 * 13 12 11 46 46 H 1.08996 * 109.47817 * 300.00197 * 14 13 12 47 47 H 1.09002 * 109.46784 * 60.00909 * 14 13 12 48 48 H 0.97005 * 119.99732 * 179.97438 * 18 17 15 49 49 H 1.09002 * 109.49759 * 63.63092 * 25 9 8 50 50 H 1.08998 * 109.49983 * 183.72865 * 25 9 8 51 51 H 1.08996 * 109.47187 * 53.64109 * 26 6 5 52 52 H 1.09003 * 109.47504 * 293.63652 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6561 -0.0035 5 6 4.8542 1.5397 -0.0075 6 7 5.3215 1.7356 1.3713 7 6 6.6362 2.3896 1.3936 8 6 7.1599 2.4332 2.8321 9 6 6.1622 3.1828 3.7095 10 6 6.6495 3.1967 5.1717 11 6 7.3893 4.5523 5.2414 12 7 6.7823 5.3846 4.1952 13 6 6.9096 6.8422 4.1205 14 6 8.1423 7.2044 3.2897 15 6 8.2730 8.7038 3.2123 16 1 7.5494 9.3352 3.7066 17 6 9.3162 9.2696 2.5104 18 7 9.4305 10.5780 2.4433 19 14 10.5672 8.1776 1.6548 20 1 10.1138 7.8973 0.2688 21 1 11.8816 8.8674 1.6157 22 1 10.7006 6.9000 2.3999 23 6 6.0935 4.6363 3.3141 24 8 5.5042 5.0671 2.3456 25 6 4.7835 2.5361 3.6228 26 6 4.3372 2.4891 2.1586 27 7 3.6334 -0.6522 0.0032 28 7 2.3027 -1.0899 0.0054 29 1 2.0056 -2.0133 0.0104 30 1 -0.3633 0.0047 1.0277 31 1 -0.3634 0.8875 -0.5180 32 1 -0.3633 -0.8924 -0.5097 33 1 1.9740 2.1211 0.0005 34 1 4.6025 2.5051 -0.4464 35 1 5.6422 1.0680 -0.5946 36 1 6.5433 3.4055 1.0096 37 1 7.3322 1.8278 0.7704 38 1 7.2813 1.4166 3.2061 39 1 8.1211 2.9467 2.8538 40 1 5.8078 3.1752 5.8639 41 1 7.3323 2.3691 5.3636 42 1 7.2446 5.0110 6.2195 43 1 8.4522 4.4124 5.0445 44 1 6.0194 7.2612 3.6515 45 1 7.0166 7.2496 5.1259 46 1 9.0326 6.7855 3.7586 47 1 8.0353 6.7971 2.2843 48 1 10.1646 10.9760 1.9498 49 1 4.8312 1.5226 4.0212 50 1 4.0698 3.1219 4.2021 51 1 3.3657 1.9997 2.0902 52 1 4.2607 3.5044 1.7693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272545085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:49 Heat of formation + Delta-G solvation = 37.659493 kcal Electronic energy + Delta-G solvation = -31332.301809 eV Core-core repulsion = 27332.806729 eV Total energy + Delta-G solvation = -3999.495080 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.48681 -40.98068 -37.93226 -36.15317 -34.81995 -33.27251 -32.55144 -31.57094 -30.95849 -30.47978 -28.81302 -27.34163 -26.80405 -25.32250 -24.15440 -23.28250 -21.63802 -21.29520 -20.70053 -20.12179 -19.71937 -18.30232 -17.54807 -17.00542 -16.29359 -15.88594 -15.56800 -15.20512 -15.00371 -14.69641 -14.41353 -14.25102 -14.11866 -13.88574 -13.79130 -13.36665 -13.26467 -13.15695 -12.95475 -12.91772 -12.69469 -12.57471 -12.44760 -12.20089 -12.06050 -11.96576 -11.69940 -11.58775 -11.35744 -11.08606 -10.99871 -10.68893 -10.45436 -10.34364 -10.24623 -10.10517 -9.83033 -9.52822 -9.33173 -9.12158 -8.78247 -8.55944 -8.14485 -8.13718 -6.06996 -4.05902 1.65691 2.52060 2.65111 2.97693 3.31008 3.37691 3.40867 3.47485 4.02592 4.34287 4.40349 4.43766 4.47586 4.48804 4.65740 4.73270 4.95830 5.05907 5.06661 5.14191 5.20406 5.27363 5.28871 5.39556 5.43831 5.46981 5.54737 5.57094 5.63159 5.63365 5.68287 5.77190 5.81213 5.88017 5.93636 5.94021 5.96573 6.07261 6.08387 6.15907 6.30782 6.33817 6.44224 6.60083 6.84674 7.04921 7.07444 7.13974 7.19866 7.32946 7.54904 7.66064 7.75237 8.46943 8.62507 8.96019 9.55029 11.06067 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.002501 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.178170 B =11190.600907 C =11680.349319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.081 3.919 3 C -0.265 4.265 4 C 0.095 3.905 5 C 0.133 3.867 6 N -0.527 5.527 7 C 0.050 3.950 8 C -0.091 4.091 9 C -0.095 4.095 10 C -0.125 4.125 11 C 0.100 3.900 12 N -0.614 5.614 13 C 0.137 3.863 14 C -0.023 4.023 15 C -0.521 4.521 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.901 5.901 19 Si 0.881 3.119 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.267 1.267 23 C 0.522 3.478 24 O -0.526 6.526 25 C -0.087 4.087 26 C 0.041 3.959 27 N -0.277 5.277 28 N -0.480 5.480 29 H 0.435 0.565 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.146 0.854 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.016 0.984 47 H 0.015 0.985 48 H 0.264 0.736 49 H 0.074 0.926 50 H 0.066 0.934 51 H 0.073 0.927 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.276 -25.356 0.815 29.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.047 4.047 3 C -0.295 4.295 4 C -0.073 4.073 5 C 0.003 3.997 6 N -0.253 5.253 7 C -0.077 4.077 8 C -0.129 4.129 9 C -0.098 4.098 10 C -0.162 4.162 11 C -0.023 4.023 12 N -0.347 5.347 13 C 0.017 3.983 14 C -0.062 4.062 15 C -0.559 4.559 16 H 0.092 0.908 17 C -0.132 4.132 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.192 1.192 23 C 0.309 3.691 24 O -0.403 6.403 25 C -0.125 4.125 26 C -0.086 4.086 27 N -0.100 5.100 28 N -0.189 5.189 29 H 0.278 0.722 30 H 0.098 0.902 31 H 0.105 0.895 32 H 0.088 0.912 33 H 0.163 0.837 34 H 0.076 0.924 35 H 0.105 0.895 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.107 0.893 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.035 0.965 47 H 0.034 0.966 48 H 0.073 0.927 49 H 0.092 0.908 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.684 -26.342 0.457 29.688 hybrid contribution 0.077 0.649 -0.740 0.987 sum -13.607 -25.693 -0.283 29.076 Atomic orbital electron populations 1.20452 0.87370 1.03849 1.03427 1.21080 0.94511 0.87828 1.01302 1.21213 0.91816 0.99210 1.17218 1.22080 0.95176 0.91417 0.98599 1.20328 0.92539 0.96085 0.90747 1.61886 1.02872 1.49939 1.10583 1.22142 0.90115 0.98427 0.97052 1.21381 0.97060 1.00332 0.94103 1.21082 0.98105 0.94269 0.96379 1.22691 1.00850 0.97460 0.95244 1.22065 0.97653 0.90584 0.92010 1.48626 1.50686 1.08205 1.27206 1.21574 1.00804 0.74985 1.00975 1.19881 0.93200 0.97722 0.95349 1.20964 1.12040 0.89404 1.33517 0.90836 1.24977 0.97600 0.94852 0.95785 1.69908 1.32003 1.09693 1.42338 0.86763 0.80837 0.81080 0.80507 1.20218 1.21337 1.19160 1.20482 0.78239 0.88005 0.82385 1.90632 1.44391 1.77660 1.27616 1.21333 0.93833 1.00492 0.96839 1.22339 0.94849 0.98279 0.93166 1.77337 0.95679 1.12701 1.24298 1.46327 1.04263 1.08059 1.60220 0.72185 0.90153 0.89530 0.91234 0.83670 0.92399 0.89463 0.93073 0.90667 0.90102 0.91014 0.90097 0.89327 0.90531 0.91265 0.90641 0.91097 0.96549 0.96647 0.92655 0.90772 0.91560 0.90912 0.91472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.43 10.43 36.01 0.38 -0.06 16 2 C 0.08 0.69 7.21 -82.26 -0.59 0.10 16 3 C -0.26 -2.80 9.46 -40.01 -0.38 -3.18 16 4 C 0.09 1.15 5.93 -82.41 -0.49 0.66 16 5 C 0.13 1.60 5.53 -4.98 -0.03 1.57 16 6 N -0.53 -6.73 4.63 -235.96 -1.09 -7.82 16 7 C 0.05 0.66 5.24 -3.77 -0.02 0.64 16 8 C -0.09 -1.10 4.77 -26.89 -0.13 -1.23 16 9 C -0.09 -1.20 0.55 -155.50 -0.09 -1.29 16 10 C -0.12 -1.26 6.21 -25.31 -0.16 -1.41 16 11 C 0.10 1.26 7.36 -3.03 -0.02 1.24 16 12 N -0.61 -10.51 2.94 -172.46 -0.51 -11.01 16 13 C 0.14 2.78 5.87 -4.04 -0.02 2.76 16 14 C -0.02 -0.57 4.37 -27.88 -0.12 -0.69 16 15 C -0.52 -14.94 9.66 -34.44 -0.33 -15.27 16 16 H 0.07 2.23 7.99 -52.48 -0.42 1.82 16 17 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 18 N -0.90 -27.92 13.96 55.43 0.77 -27.14 16 19 Si 0.88 22.19 27.47 -169.99 -4.67 17.52 16 20 H -0.28 -6.96 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.27 -6.45 6.54 56.52 0.37 -6.08 16 23 C 0.52 8.99 6.32 -11.04 -0.07 8.92 16 24 O -0.53 -10.87 13.84 5.56 0.08 -10.79 16 25 C -0.09 -1.03 4.77 -26.90 -0.13 -1.16 16 26 C 0.04 0.54 5.07 -3.77 -0.02 0.52 16 27 N -0.28 -3.45 12.70 33.67 0.43 -3.02 16 28 N -0.48 -4.37 7.36 33.48 0.25 -4.12 16 29 H 0.43 2.54 8.96 -182.60 -1.64 0.90 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.15 1.41 8.06 -52.48 -0.42 0.98 16 34 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 35 H 0.09 0.99 7.98 -51.93 -0.41 0.58 16 36 H 0.05 0.82 6.68 -51.93 -0.35 0.47 16 37 H 0.07 0.88 8.01 -51.92 -0.42 0.46 16 38 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.08 0.72 7.89 -51.93 -0.41 0.31 16 41 H 0.09 0.71 7.87 -51.93 -0.41 0.30 16 42 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.08 1.64 7.94 -51.93 -0.41 1.23 16 45 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 46 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 47 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 48 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 49 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 51 H 0.07 0.92 6.17 -51.93 -0.32 0.60 16 52 H 0.07 1.06 5.78 -51.93 -0.30 0.76 16 LS Contribution 403.82 15.07 6.09 6.09 Total: -1.00 -35.43 403.82 -11.07 -46.49 By element: Atomic # 1 Polarization: 9.83 SS G_CDS: -10.09 Total: -0.26 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: -2.32 Total: -5.92 kcal Atomic # 7 Polarization: -52.97 SS G_CDS: -0.15 Total: -53.12 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.08 Total: -10.79 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -4.67 Total: 17.52 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.43 -11.07 -46.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272545085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.154 kcal (2) G-P(sol) polarization free energy of solvation -35.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds