Wall clock time and date at job start Wed Apr 1 2020 03:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35320 * 126.12550 * 2 1 4 4 C 1.39868 * 107.92193 * 180.15017 * 3 2 1 5 5 C 1.50694 * 125.89716 * 179.86826 * 4 3 2 6 6 N 1.46897 * 109.47527 * 94.71360 * 5 4 3 7 7 C 1.46856 * 111.00487 * 169.99827 * 6 5 4 8 8 C 1.53146 * 109.45272 * 186.35530 * 7 6 5 9 9 C 1.52540 * 109.31060 * 301.73506 * 8 7 6 10 10 C 1.54130 * 110.08214 * 178.12571 * 9 8 7 11 11 C 1.54588 * 101.65494 * 94.64511 * 10 9 8 12 12 N 1.46821 * 105.49285 * 24.98079 * 11 10 9 13 13 C 1.46504 * 124.36003 * 163.05640 * 12 11 10 14 14 C 1.53001 * 109.46756 * 89.99736 * 13 12 11 15 15 C 1.50706 * 109.47007 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99898 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00120 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99913 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00150 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47492 * 89.99714 * 19 17 15 21 21 H 1.48495 * 109.47117 * 210.00131 * 19 17 15 22 22 H 1.48503 * 109.46784 * 329.99810 * 19 17 15 23 23 C 1.34566 * 111.28067 * 343.08114 * 12 11 10 24 24 O 1.21278 * 125.03137 * 180.68113 * 23 12 11 25 25 C 1.52535 * 110.49828 * 56.31363 * 9 8 7 26 26 C 1.46862 * 111.00026 * 294.35693 * 6 5 4 27 27 N 1.30831 * 108.20073 * 359.59875 * 4 3 2 28 28 N 1.34945 * 126.12878 * 179.71376 * 2 1 3 29 29 H 0.97000 * 126.03944 * 359.97438 * 28 2 1 30 30 H 1.08999 * 109.46842 * 270.26368 * 1 2 3 31 31 H 1.08998 * 109.47413 * 30.26859 * 1 2 3 32 32 H 1.09004 * 109.47050 * 150.26406 * 1 2 3 33 33 H 1.08005 * 126.03653 * 0.02963 * 3 2 1 34 34 H 1.08996 * 109.47354 * 334.70860 * 5 4 3 35 35 H 1.09002 * 109.47066 * 214.71078 * 5 4 3 36 36 H 1.09003 * 109.47352 * 66.35613 * 7 6 5 37 37 H 1.09007 * 109.47138 * 306.34768 * 7 6 5 38 38 H 1.08999 * 109.49962 * 61.68719 * 8 7 6 39 39 H 1.09004 * 109.49132 * 181.78514 * 8 7 6 40 40 H 1.09003 * 110.98940 * 212.73499 * 10 9 8 41 41 H 1.08998 * 110.99171 * 336.55612 * 10 9 8 42 42 H 1.08999 * 110.24457 * 143.98617 * 11 10 9 43 43 H 1.09002 * 110.24093 * 265.88774 * 11 10 9 44 44 H 1.08993 * 109.47493 * 210.00021 * 13 12 11 45 45 H 1.09006 * 109.47118 * 330.00314 * 13 12 11 46 46 H 1.08996 * 109.47817 * 300.00197 * 14 13 12 47 47 H 1.09002 * 109.46784 * 60.00909 * 14 13 12 48 48 H 0.97005 * 119.99732 * 179.97438 * 18 17 15 49 49 H 1.09002 * 109.49759 * 63.63092 * 25 9 8 50 50 H 1.08998 * 109.49983 * 183.72865 * 25 9 8 51 51 H 1.08996 * 109.47187 * 53.64109 * 26 6 5 52 52 H 1.09003 * 109.47504 * 293.63652 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6561 -0.0035 5 6 4.8542 1.5397 -0.0075 6 7 5.3215 1.7356 1.3713 7 6 6.6362 2.3896 1.3936 8 6 7.1599 2.4332 2.8321 9 6 6.1622 3.1828 3.7095 10 6 6.6495 3.1967 5.1717 11 6 7.3893 4.5523 5.2414 12 7 6.7823 5.3846 4.1952 13 6 6.9096 6.8422 4.1205 14 6 8.1423 7.2044 3.2897 15 6 8.2730 8.7038 3.2123 16 1 7.5494 9.3352 3.7066 17 6 9.3162 9.2696 2.5104 18 7 9.4305 10.5780 2.4433 19 14 10.5672 8.1776 1.6548 20 1 10.1138 7.8973 0.2688 21 1 11.8816 8.8674 1.6157 22 1 10.7006 6.9000 2.3999 23 6 6.0935 4.6363 3.3141 24 8 5.5042 5.0671 2.3456 25 6 4.7835 2.5361 3.6228 26 6 4.3372 2.4891 2.1586 27 7 3.6334 -0.6522 0.0032 28 7 2.3027 -1.0899 0.0054 29 1 2.0056 -2.0133 0.0104 30 1 -0.3633 0.0047 1.0277 31 1 -0.3634 0.8875 -0.5180 32 1 -0.3633 -0.8924 -0.5097 33 1 1.9740 2.1211 0.0005 34 1 4.6025 2.5051 -0.4464 35 1 5.6422 1.0680 -0.5946 36 1 6.5433 3.4055 1.0096 37 1 7.3322 1.8278 0.7704 38 1 7.2813 1.4166 3.2061 39 1 8.1211 2.9467 2.8538 40 1 5.8078 3.1752 5.8639 41 1 7.3323 2.3691 5.3636 42 1 7.2446 5.0110 6.2195 43 1 8.4522 4.4124 5.0445 44 1 6.0194 7.2612 3.6515 45 1 7.0166 7.2496 5.1259 46 1 9.0326 6.7855 3.7586 47 1 8.0353 6.7971 2.2843 48 1 10.1646 10.9760 1.9498 49 1 4.8312 1.5226 4.0212 50 1 4.0698 3.1219 4.2021 51 1 3.3657 1.9997 2.0902 52 1 4.2607 3.5044 1.7693 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272545085.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:48 Heat of formation + Delta-G solvation = 12.842750 kcal Electronic energy + Delta-G solvation = -31333.377944 eV Core-core repulsion = 27332.806729 eV Total energy + Delta-G solvation = -4000.571215 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.34999 -42.04490 -39.04197 -37.49413 -36.21232 -34.92971 -33.65044 -32.63895 -32.11677 -31.60681 -30.09384 -28.04867 -27.71266 -27.04135 -25.22860 -24.30182 -23.27271 -22.31311 -21.63335 -21.38034 -20.59853 -19.57227 -19.05739 -18.26016 -17.43605 -17.11185 -16.89193 -16.32705 -16.15680 -16.01536 -15.66636 -15.38646 -15.19230 -14.90188 -14.76443 -14.68926 -14.59032 -14.30806 -14.14983 -13.96379 -13.64639 -13.55712 -13.42119 -13.32811 -13.12442 -13.03483 -12.92180 -12.85631 -12.69823 -12.42314 -12.17267 -12.05569 -11.96280 -11.77849 -11.53193 -11.50794 -11.31700 -11.19713 -10.83587 -10.46634 -10.31980 -9.55971 -9.54204 -9.22390 -8.35496 -6.40247 0.90714 1.29820 1.31525 1.42683 1.66300 1.68974 1.98378 2.16666 2.30010 2.99452 3.04953 3.33881 3.52032 3.59790 3.75082 3.80918 4.01519 4.06070 4.19203 4.24324 4.29388 4.34303 4.41215 4.45431 4.51767 4.56051 4.60851 4.68027 4.69526 4.74109 4.75328 4.77591 4.80151 4.84470 4.91826 4.97740 5.01469 5.10638 5.11272 5.13554 5.15667 5.24276 5.25373 5.28462 5.35096 5.48533 5.62448 5.76276 6.04726 6.10036 6.18584 6.33838 6.47158 6.66026 6.75489 7.23616 7.29899 8.80752 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.015707 B = 0.002501 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.178170 B =11190.600907 C =11680.349319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.098 3.902 3 C -0.293 4.293 4 C 0.084 3.916 5 C 0.132 3.868 6 N -0.520 5.520 7 C 0.049 3.951 8 C -0.087 4.087 9 C -0.088 4.088 10 C -0.108 4.108 11 C 0.091 3.909 12 N -0.622 5.622 13 C 0.148 3.852 14 C -0.012 4.012 15 C -0.532 4.532 16 H 0.039 0.961 17 C 0.010 3.990 18 N -0.944 5.944 19 Si 0.948 3.052 20 H -0.278 1.278 21 H -0.276 1.276 22 H -0.247 1.247 23 C 0.508 3.492 24 O -0.572 6.572 25 C -0.082 4.082 26 C 0.046 3.954 27 N -0.309 5.309 28 N -0.470 5.470 29 H 0.449 0.551 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.144 0.856 34 H 0.046 0.954 35 H 0.091 0.909 36 H 0.012 0.988 37 H 0.088 0.912 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.123 0.877 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.028 0.972 47 H -0.004 1.004 48 H 0.268 0.732 49 H 0.097 0.903 50 H 0.067 0.933 51 H 0.076 0.924 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.211 -29.281 2.301 32.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.032 4.032 3 C -0.323 4.323 4 C -0.083 4.083 5 C 0.003 3.997 6 N -0.245 5.245 7 C -0.079 4.079 8 C -0.125 4.125 9 C -0.091 4.091 10 C -0.146 4.146 11 C -0.031 4.031 12 N -0.354 5.354 13 C 0.026 3.974 14 C -0.050 4.050 15 C -0.571 4.571 16 H 0.058 0.942 17 C -0.188 4.188 18 N -0.585 5.585 19 Si 0.771 3.229 20 H -0.203 1.203 21 H -0.201 1.201 22 H -0.170 1.170 23 C 0.297 3.703 24 O -0.452 6.452 25 C -0.120 4.120 26 C -0.081 4.081 27 N -0.133 5.133 28 N -0.181 5.181 29 H 0.295 0.705 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.162 0.838 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.031 0.969 37 H 0.107 0.893 38 H 0.128 0.872 39 H 0.087 0.913 40 H 0.118 0.882 41 H 0.141 0.859 42 H 0.114 0.886 43 H 0.093 0.907 44 H 0.067 0.933 45 H 0.106 0.894 46 H 0.046 0.954 47 H 0.014 0.986 48 H 0.077 0.923 49 H 0.116 0.884 50 H 0.086 0.914 51 H 0.094 0.906 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -13.616 -30.314 1.981 33.291 hybrid contribution -0.076 1.933 -1.241 2.298 sum -13.692 -28.381 0.741 31.520 Atomic orbital electron populations 1.20603 0.84313 1.05285 1.04664 1.21600 0.96154 0.86839 0.98585 1.21358 0.91773 1.00021 1.19116 1.22045 0.95520 0.91537 0.99215 1.20302 0.93090 0.95735 0.90584 1.61975 1.02629 1.49069 1.10781 1.22162 0.90809 0.96485 0.98398 1.21428 0.96463 1.01663 0.92987 1.21095 0.98962 0.90598 0.98457 1.22759 1.01825 0.96876 0.93108 1.22429 0.98028 0.91301 0.91353 1.48714 1.51035 1.06978 1.28636 1.21134 0.97724 0.77832 1.00725 1.19718 0.95528 0.94626 0.95132 1.21285 1.11207 0.91581 1.32994 0.94236 1.25923 0.99974 0.96290 0.96602 1.70044 1.33180 1.11683 1.43562 0.85702 0.78235 0.79865 0.79087 1.20336 1.20083 1.17001 1.21437 0.77213 0.90134 0.81519 1.90613 1.46100 1.78955 1.29544 1.21348 0.93344 1.01618 0.95717 1.22239 0.95340 0.96336 0.94214 1.77239 0.97635 1.12738 1.25700 1.46343 1.03389 1.09055 1.59320 0.70477 0.88832 0.88871 0.89051 0.83781 0.93614 0.89116 0.96925 0.89343 0.87219 0.91312 0.88210 0.85922 0.88620 0.90670 0.93310 0.89448 0.95359 0.98559 0.92299 0.88429 0.91392 0.90602 0.94922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.43 71.24 0.74 0.14 16 2 C 0.10 1.52 7.21 41.41 0.30 1.82 16 3 C -0.29 -6.17 9.46 21.99 0.21 -5.97 16 4 C 0.08 2.03 5.93 43.10 0.26 2.29 16 5 C 0.13 3.32 5.53 85.56 0.47 3.79 16 6 N -0.52 -13.16 4.63 -900.44 -4.17 -17.33 16 7 C 0.05 1.29 5.24 86.36 0.45 1.74 16 8 C -0.09 -1.92 4.77 30.49 0.15 -1.77 16 9 C -0.09 -2.04 0.55 -52.82 -0.03 -2.06 16 10 C -0.11 -1.70 6.21 31.52 0.20 -1.51 16 11 C 0.09 1.99 7.36 86.86 0.64 2.63 16 12 N -0.62 -20.77 2.94 -818.06 -2.40 -23.18 16 13 C 0.15 6.12 5.87 86.38 0.51 6.62 16 14 C -0.01 -0.57 4.37 29.85 0.13 -0.44 16 15 C -0.53 -31.52 9.66 25.60 0.25 -31.27 16 16 H 0.04 2.53 7.99 -2.91 -0.02 2.51 16 17 C 0.01 0.59 5.47 84.65 0.46 1.05 16 18 N -0.94 -60.09 13.96 21.45 0.30 -59.79 16 19 Si 0.95 45.96 27.47 68.60 1.88 47.85 16 20 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 21 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 22 H -0.25 -11.04 6.54 99.48 0.65 -10.39 16 23 C 0.51 17.53 6.32 87.72 0.55 18.09 16 24 O -0.57 -24.95 13.84 -3.02 -0.04 -24.99 16 25 C -0.08 -1.79 4.77 30.49 0.15 -1.65 16 26 C 0.05 1.22 5.07 86.36 0.44 1.66 16 27 N -0.31 -7.47 12.70 -47.39 -0.60 -8.08 16 28 N -0.47 -7.80 7.36 -48.00 -0.35 -8.16 16 29 H 0.45 4.29 8.96 -213.33 -1.91 2.38 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.09 0.26 8.14 -2.38 -0.02 0.24 16 33 H 0.14 2.93 8.06 -2.91 -0.02 2.90 16 34 H 0.05 1.22 8.12 -2.39 -0.02 1.21 16 35 H 0.09 2.13 7.98 -2.39 -0.02 2.12 16 36 H 0.01 0.42 6.68 -2.39 -0.02 0.41 16 37 H 0.09 2.02 8.01 -2.38 -0.02 2.00 16 38 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 40 H 0.10 1.27 7.89 -2.39 -0.02 1.25 16 41 H 0.12 1.21 7.87 -2.39 -0.02 1.19 16 42 H 0.10 1.75 8.14 -2.39 -0.02 1.74 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 44 H 0.05 2.24 7.94 -2.39 -0.02 2.23 16 45 H 0.09 3.28 8.14 -2.38 -0.02 3.26 16 46 H 0.03 1.32 7.20 -2.39 -0.02 1.30 16 47 H 0.00 -0.21 7.57 -2.39 -0.02 -0.23 16 48 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 49 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 51 H 0.08 1.92 6.17 -2.39 -0.01 1.90 16 52 H 0.03 1.10 5.78 -2.39 -0.01 1.09 16 Total: -1.00 -81.54 403.82 -0.57 -82.11 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -1.05 Total: 16.42 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 5.87 Total: -4.85 kcal Atomic # 7 Polarization: -109.31 SS G_CDS: -7.23 Total: -116.54 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.04 Total: -24.99 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 1.88 Total: 47.85 kcal Total: -81.54 -0.57 -82.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272545085.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.955 kcal (2) G-P(sol) polarization free energy of solvation -81.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds