Wall clock time and date at job start Wed Apr 1 2020 03:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30835 * 125.90375 * 2 1 4 4 N 1.40084 * 108.20972 * 180.02562 * 3 2 1 5 5 H 0.97002 * 126.03916 * 179.97438 * 4 3 2 6 6 C 1.34947 * 107.92384 * 359.76113 * 4 3 2 7 7 C 1.50703 * 126.12586 * 180.24223 * 6 4 3 8 8 C 1.35310 * 107.74725 * 0.38575 * 6 4 3 9 9 C 1.50704 * 126.04321 * 179.87509 * 8 6 4 10 10 N 1.46894 * 109.47260 * 269.71648 * 9 8 6 11 11 C 1.48732 * 111.00075 * 60.14080 * 10 9 8 12 12 C 1.55000 * 103.35559 * 158.81850 * 11 10 9 13 13 C 1.54798 * 102.94191 * 323.04364 * 12 11 10 14 14 C 1.47073 * 111.00404 * 177.29403 * 10 9 8 15 15 C 1.53859 * 110.71103 * 93.71911 * 14 10 9 16 16 C 1.54655 * 101.58780 * 215.61185 * 15 14 10 17 17 N 1.46846 * 105.50354 * 24.74685 * 16 15 14 18 18 C 1.46498 * 124.36777 * 163.17601 * 17 16 15 19 19 C 1.53001 * 109.47245 * 269.96934 * 18 17 16 20 20 C 1.50700 * 109.47382 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99989 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00441 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00320 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99800 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46905 * 89.99957 * 24 22 20 26 26 H 1.48492 * 109.47136 * 210.00434 * 24 22 20 27 27 H 1.48505 * 109.47164 * 330.00362 * 24 22 20 28 28 C 1.34667 * 111.26257 * 343.12894 * 17 16 15 29 29 O 1.21289 * 125.07732 * 181.12209 * 28 17 16 30 30 H 1.09004 * 109.46769 * 269.97741 * 1 2 3 31 31 H 1.08997 * 109.47015 * 29.96850 * 1 2 3 32 32 H 1.08991 * 109.47352 * 149.97461 * 1 2 3 33 33 H 1.09006 * 109.46834 * 270.16955 * 7 6 4 34 34 H 1.08993 * 109.47428 * 30.17061 * 7 6 4 35 35 H 1.09002 * 109.46779 * 150.17730 * 7 6 4 36 36 H 1.08996 * 109.47064 * 149.71377 * 9 8 6 37 37 H 1.08993 * 109.46885 * 29.71864 * 9 8 6 38 38 H 1.09000 * 110.64319 * 40.34885 * 11 10 9 39 39 H 1.09007 * 110.78140 * 277.34823 * 11 10 9 40 40 H 1.08999 * 110.71742 * 204.67924 * 12 11 10 41 41 H 1.08998 * 110.87069 * 81.47597 * 12 11 10 42 42 H 1.08999 * 110.36802 * 263.06107 * 13 12 11 43 43 H 1.08992 * 110.37424 * 140.72584 * 13 12 11 44 44 H 1.09001 * 111.00495 * 333.68731 * 15 14 10 45 45 H 1.09000 * 111.00446 * 97.49800 * 15 14 10 46 46 H 1.08993 * 110.23781 * 143.75519 * 16 15 14 47 47 H 1.08997 * 110.23896 * 265.74099 * 16 15 14 48 48 H 1.08998 * 109.47183 * 29.97578 * 18 17 16 49 49 H 1.09000 * 109.47186 * 149.97209 * 18 17 16 50 50 H 1.08998 * 109.47556 * 300.00416 * 19 18 17 51 51 H 1.09006 * 109.46699 * 60.00489 * 19 18 17 52 52 H 0.97003 * 120.00328 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3909 1.2078 -0.0011 6 6 3.6142 -0.7155 0.0044 7 6 4.8350 -1.5990 0.0108 8 6 2.3272 -1.1331 -0.0006 9 6 1.8598 -2.5658 -0.0004 10 7 1.7076 -3.0315 -1.3852 11 6 2.9993 -2.9543 -2.1186 12 6 2.8051 -3.9489 -3.2914 13 6 1.9813 -5.0895 -2.6460 14 6 1.3138 -4.4480 -1.4248 15 6 -0.2163 -4.5851 -1.5098 16 6 -0.4627 -5.8508 -0.6559 17 7 0.6803 -5.9334 0.2623 18 6 0.7081 -6.7526 1.4765 19 6 0.1889 -5.9310 2.6582 20 6 0.2169 -6.7739 3.9071 21 1 0.5702 -7.7935 3.8626 22 6 -0.2083 -6.2434 5.1065 23 7 -0.1843 -6.9792 6.1963 24 14 -0.8187 -4.4796 5.1837 25 1 -2.2827 -4.4512 4.9365 26 1 -0.5323 -3.9151 6.5269 27 1 -0.1261 -3.6704 4.1488 28 6 1.6999 -5.1597 -0.1563 29 8 2.7713 -5.0559 0.4027 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5133 32 1 -0.3633 -0.8897 -0.5142 33 1 5.1338 -1.8134 -1.0153 34 1 5.6489 -1.0905 0.5275 35 1 4.6052 -2.5324 0.5248 36 1 0.9013 -2.6352 0.5137 37 1 2.5934 -3.1871 0.5133 38 1 3.8236 -3.2701 -1.4793 39 1 3.1708 -1.9456 -2.4946 40 1 3.7668 -4.3202 -3.6453 41 1 2.2490 -3.4849 -4.1060 42 1 2.6375 -5.9029 -2.3361 43 1 1.2269 -5.4540 -3.3430 44 1 -0.7112 -3.7173 -1.0739 45 1 -0.5382 -4.7393 -2.5398 46 1 -1.3914 -5.7517 -0.0941 47 1 -0.4991 -6.7343 -1.2931 48 1 0.0757 -7.6294 1.3378 49 1 1.7312 -7.0707 1.6768 50 1 0.8213 -5.0541 2.7969 51 1 -0.8343 -5.6130 2.4578 52 1 -0.4832 -6.6059 7.0403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272977785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:36 Heat of formation + Delta-G solvation = 48.892503 kcal Electronic energy + Delta-G solvation = -32764.135946 eV Core-core repulsion = 28765.127966 eV Total energy + Delta-G solvation = -3999.007980 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.64807 -40.95514 -37.59512 -36.27132 -33.85741 -33.53246 -33.18251 -31.90700 -30.78627 -29.46215 -28.14505 -27.78779 -27.33589 -25.28455 -24.80080 -23.31518 -21.69258 -21.36206 -20.21892 -20.16575 -19.27422 -18.60638 -17.31117 -17.07464 -16.32059 -16.16572 -15.43242 -15.11834 -15.09278 -14.69666 -14.63656 -14.27642 -13.80298 -13.70353 -13.37438 -13.26484 -13.19761 -12.95560 -12.84104 -12.74342 -12.55799 -12.41427 -12.33481 -12.08674 -12.00445 -11.92667 -11.79995 -11.51735 -11.25760 -11.14610 -11.05337 -10.96514 -10.66409 -10.49338 -10.34341 -10.05798 -9.97183 -9.75330 -9.29761 -9.23489 -8.57426 -8.56793 -8.26978 -7.93656 -6.08271 -4.07469 1.81672 2.66035 2.79198 2.81199 3.28823 3.37552 3.40077 3.43083 4.00093 4.35219 4.41878 4.43042 4.59341 4.59883 4.70712 4.83830 4.96470 5.03183 5.09274 5.14837 5.26181 5.26756 5.31379 5.35711 5.48273 5.54416 5.61486 5.66963 5.67754 5.71278 5.74999 5.78173 5.84041 5.86421 5.90612 5.92914 6.04138 6.06028 6.07277 6.11497 6.25369 6.28747 6.56475 6.68268 6.79483 6.89522 6.98595 7.13359 7.25048 7.31428 7.58527 7.69471 7.72971 8.43929 8.50157 8.94592 9.53793 11.04752 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009394 B = 0.004341 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.870246 B = 6448.475612 C = 8036.056308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.097 3.903 3 N -0.303 5.303 4 N -0.480 5.480 5 H 0.435 0.565 6 C 0.095 3.905 7 C -0.100 4.100 8 C -0.218 4.218 9 C 0.093 3.907 10 N -0.477 5.477 11 C 0.033 3.967 12 C -0.121 4.121 13 C -0.106 4.106 14 C 0.059 3.941 15 C -0.112 4.112 16 C 0.097 3.903 17 N -0.609 5.609 18 C 0.135 3.865 19 C -0.022 4.022 20 C -0.522 4.522 21 H 0.074 0.926 22 C 0.071 3.929 23 N -0.901 5.901 24 Si 0.877 3.123 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.265 1.265 28 C 0.501 3.499 29 O -0.529 6.529 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.081 0.919 44 H 0.088 0.912 45 H 0.090 0.910 46 H 0.081 0.919 47 H 0.069 0.931 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.019 0.981 51 H 0.013 0.987 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.496 10.059 -21.561 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.070 4.070 3 N -0.126 5.126 4 N -0.188 5.188 5 H 0.278 0.722 6 C -0.034 4.034 7 C -0.158 4.158 8 C -0.229 4.229 9 C -0.035 4.035 10 N -0.201 5.201 11 C -0.094 4.094 12 C -0.160 4.160 13 C -0.145 4.145 14 C -0.035 4.035 15 C -0.150 4.150 16 C -0.027 4.027 17 N -0.342 5.342 18 C 0.015 3.985 19 C -0.061 4.061 20 C -0.560 4.560 21 H 0.092 0.908 22 C -0.130 4.130 23 N -0.539 5.539 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.189 1.189 28 C 0.287 3.713 29 O -0.406 6.406 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.106 0.894 45 H 0.109 0.891 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.090 0.910 49 H 0.094 0.906 50 H 0.038 0.962 51 H 0.031 0.969 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.621 11.644 -21.219 24.641 hybrid contribution 0.563 -0.104 0.821 1.001 sum 5.184 11.540 -20.398 24.002 Atomic orbital electron populations 1.20205 0.86763 1.03456 1.02947 1.22212 0.96951 0.90043 0.97791 1.77250 0.86416 1.22339 1.26621 1.46091 1.07266 1.04700 1.60753 0.72175 1.20869 0.96993 0.84843 1.00705 1.20652 0.92773 0.99003 1.03358 1.19502 0.91005 0.95736 1.16683 1.21027 1.02394 0.90782 0.89303 1.65045 1.27540 1.13364 1.14125 1.23386 0.91688 0.99491 0.94860 1.22523 0.99887 0.95675 0.97869 1.22247 0.99428 0.98084 0.94729 1.22090 0.97195 0.89808 0.94421 1.22618 0.93385 0.97991 1.01046 1.22173 0.90596 0.97961 0.91971 1.48677 1.15324 1.45293 1.24881 1.21601 1.02257 0.92800 0.81839 1.19872 0.95823 0.96676 0.93692 1.20951 1.43813 1.00219 0.91032 0.90836 1.24955 0.95016 0.97524 0.95534 1.69899 1.47752 1.36721 0.99535 0.86812 0.79436 0.85727 0.77599 1.20203 1.21292 1.18929 1.21083 0.84049 0.79830 0.86349 1.90619 1.23909 1.64136 1.61963 0.90646 0.91138 0.89787 0.90070 0.91233 0.88802 0.90384 0.89685 0.92457 0.90431 0.91085 0.90720 0.91093 0.90043 0.89365 0.89137 0.90037 0.91261 0.90971 0.90606 0.96230 0.96919 0.92634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.12 36.00 0.36 -0.51 16 2 C 0.10 1.38 7.22 -82.40 -0.59 0.78 16 3 N -0.30 -4.33 12.70 33.67 0.43 -3.90 16 4 N -0.48 -5.64 7.36 33.48 0.25 -5.39 16 5 H 0.43 3.62 8.96 -182.61 -1.64 1.98 16 6 C 0.09 1.17 6.63 -82.26 -0.55 0.63 16 7 C -0.10 -0.99 8.60 36.01 0.31 -0.68 16 8 C -0.22 -3.09 4.94 -105.05 -0.52 -3.61 16 9 C 0.09 1.39 3.95 -4.98 -0.02 1.37 16 10 N -0.48 -6.07 4.98 -218.20 -1.09 -7.15 16 11 C 0.03 0.37 4.66 -1.75 -0.01 0.37 16 12 C -0.12 -1.12 7.07 -24.73 -0.17 -1.29 16 13 C -0.11 -1.09 6.24 -25.66 -0.16 -1.25 16 14 C 0.06 0.73 0.76 -132.18 -0.10 0.63 16 15 C -0.11 -1.18 6.39 -25.41 -0.16 -1.34 16 16 C 0.10 1.16 7.36 -2.98 -0.02 1.14 16 17 N -0.61 -10.04 2.94 -172.50 -0.51 -10.54 16 18 C 0.14 2.67 5.88 -4.04 -0.02 2.65 16 19 C -0.02 -0.53 4.37 -27.88 -0.12 -0.66 16 20 C -0.52 -14.77 9.66 -34.44 -0.33 -15.10 16 21 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 22 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 23 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 24 Si 0.88 22.03 27.47 -169.99 -4.67 17.36 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.26 -6.55 6.54 56.52 0.37 -6.18 16 28 C 0.50 8.36 5.45 -11.13 -0.06 8.30 16 29 O -0.53 -10.55 15.09 5.55 0.08 -10.47 16 30 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.08 0.93 7.92 -51.93 -0.41 0.51 16 33 H 0.08 0.68 7.03 -51.93 -0.36 0.31 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.13 7.05 -51.93 -0.37 0.76 16 36 H 0.08 1.28 7.92 -51.93 -0.41 0.87 16 37 H 0.09 1.50 4.04 -51.93 -0.21 1.29 16 38 H 0.06 0.70 5.89 -51.93 -0.31 0.39 16 39 H 0.08 0.86 7.84 -51.92 -0.41 0.45 16 40 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.07 0.81 7.73 -51.93 -0.40 0.40 16 43 H 0.08 0.66 7.29 -51.93 -0.38 0.28 16 44 H 0.09 0.96 8.10 -51.93 -0.42 0.54 16 45 H 0.09 0.71 7.41 -51.93 -0.38 0.32 16 46 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 49 H 0.08 1.61 7.93 -51.93 -0.41 1.20 16 50 H 0.02 0.50 7.20 -51.93 -0.37 0.13 16 51 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 52 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 401.35 15.07 6.05 6.05 Total: -1.00 -34.72 401.35 -10.80 -45.52 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -9.85 Total: 2.06 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.27 Total: -6.57 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.15 Total: -53.95 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.72 -10.80 -45.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272977785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.413 kcal (2) G-P(sol) polarization free energy of solvation -34.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds