Wall clock time and date at job start Wed Apr 1 2020 03:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30835 * 125.90375 * 2 1 4 4 N 1.40084 * 108.20972 * 180.02562 * 3 2 1 5 5 H 0.97002 * 126.03916 * 179.97438 * 4 3 2 6 6 C 1.34947 * 107.92384 * 359.76113 * 4 3 2 7 7 C 1.50703 * 126.12586 * 180.24223 * 6 4 3 8 8 C 1.35310 * 107.74725 * 0.38575 * 6 4 3 9 9 C 1.50704 * 126.04321 * 179.87509 * 8 6 4 10 10 N 1.46894 * 109.47260 * 269.71648 * 9 8 6 11 11 C 1.48732 * 111.00075 * 60.14080 * 10 9 8 12 12 C 1.55000 * 103.35559 * 158.81850 * 11 10 9 13 13 C 1.54798 * 102.94191 * 323.04364 * 12 11 10 14 14 C 1.47073 * 111.00404 * 177.29403 * 10 9 8 15 15 C 1.53859 * 110.71103 * 93.71911 * 14 10 9 16 16 C 1.54655 * 101.58780 * 215.61185 * 15 14 10 17 17 N 1.46846 * 105.50354 * 24.74685 * 16 15 14 18 18 C 1.46498 * 124.36777 * 163.17601 * 17 16 15 19 19 C 1.53001 * 109.47245 * 269.96934 * 18 17 16 20 20 C 1.50700 * 109.47382 * 179.97438 * 19 18 17 21 21 H 1.08002 * 119.99989 * 0.02562 * 20 19 18 22 22 C 1.37875 * 120.00441 * 180.02562 * 20 19 18 23 23 N 1.31507 * 120.00320 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99800 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.46905 * 89.99957 * 24 22 20 26 26 H 1.48492 * 109.47136 * 210.00434 * 24 22 20 27 27 H 1.48505 * 109.47164 * 330.00362 * 24 22 20 28 28 C 1.34667 * 111.26257 * 343.12894 * 17 16 15 29 29 O 1.21289 * 125.07732 * 181.12209 * 28 17 16 30 30 H 1.09004 * 109.46769 * 269.97741 * 1 2 3 31 31 H 1.08997 * 109.47015 * 29.96850 * 1 2 3 32 32 H 1.08991 * 109.47352 * 149.97461 * 1 2 3 33 33 H 1.09006 * 109.46834 * 270.16955 * 7 6 4 34 34 H 1.08993 * 109.47428 * 30.17061 * 7 6 4 35 35 H 1.09002 * 109.46779 * 150.17730 * 7 6 4 36 36 H 1.08996 * 109.47064 * 149.71377 * 9 8 6 37 37 H 1.08993 * 109.46885 * 29.71864 * 9 8 6 38 38 H 1.09000 * 110.64319 * 40.34885 * 11 10 9 39 39 H 1.09007 * 110.78140 * 277.34823 * 11 10 9 40 40 H 1.08999 * 110.71742 * 204.67924 * 12 11 10 41 41 H 1.08998 * 110.87069 * 81.47597 * 12 11 10 42 42 H 1.08999 * 110.36802 * 263.06107 * 13 12 11 43 43 H 1.08992 * 110.37424 * 140.72584 * 13 12 11 44 44 H 1.09001 * 111.00495 * 333.68731 * 15 14 10 45 45 H 1.09000 * 111.00446 * 97.49800 * 15 14 10 46 46 H 1.08993 * 110.23781 * 143.75519 * 16 15 14 47 47 H 1.08997 * 110.23896 * 265.74099 * 16 15 14 48 48 H 1.08998 * 109.47183 * 29.97578 * 18 17 16 49 49 H 1.09000 * 109.47186 * 149.97209 * 18 17 16 50 50 H 1.08998 * 109.47556 * 300.00416 * 19 18 17 51 51 H 1.09006 * 109.46699 * 60.00489 * 19 18 17 52 52 H 0.97003 * 120.00328 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0598 0.0000 4 7 3.6088 0.6340 -0.0006 5 1 4.3909 1.2078 -0.0011 6 6 3.6142 -0.7155 0.0044 7 6 4.8350 -1.5990 0.0108 8 6 2.3272 -1.1331 -0.0006 9 6 1.8598 -2.5658 -0.0004 10 7 1.7076 -3.0315 -1.3852 11 6 2.9993 -2.9543 -2.1186 12 6 2.8051 -3.9489 -3.2914 13 6 1.9813 -5.0895 -2.6460 14 6 1.3138 -4.4480 -1.4248 15 6 -0.2163 -4.5851 -1.5098 16 6 -0.4627 -5.8508 -0.6559 17 7 0.6803 -5.9334 0.2623 18 6 0.7081 -6.7526 1.4765 19 6 0.1889 -5.9310 2.6582 20 6 0.2169 -6.7739 3.9071 21 1 0.5702 -7.7935 3.8626 22 6 -0.2083 -6.2434 5.1065 23 7 -0.1843 -6.9792 6.1963 24 14 -0.8187 -4.4796 5.1837 25 1 -2.2827 -4.4512 4.9365 26 1 -0.5323 -3.9151 6.5269 27 1 -0.1261 -3.6704 4.1488 28 6 1.6999 -5.1597 -0.1563 29 8 2.7713 -5.0559 0.4027 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5133 32 1 -0.3633 -0.8897 -0.5142 33 1 5.1338 -1.8134 -1.0153 34 1 5.6489 -1.0905 0.5275 35 1 4.6052 -2.5324 0.5248 36 1 0.9013 -2.6352 0.5137 37 1 2.5934 -3.1871 0.5133 38 1 3.8236 -3.2701 -1.4793 39 1 3.1708 -1.9456 -2.4946 40 1 3.7668 -4.3202 -3.6453 41 1 2.2490 -3.4849 -4.1060 42 1 2.6375 -5.9029 -2.3361 43 1 1.2269 -5.4540 -3.3430 44 1 -0.7112 -3.7173 -1.0739 45 1 -0.5382 -4.7393 -2.5398 46 1 -1.3914 -5.7517 -0.0941 47 1 -0.4991 -6.7343 -1.2931 48 1 0.0757 -7.6294 1.3378 49 1 1.7312 -7.0707 1.6768 50 1 0.8213 -5.0541 2.7969 51 1 -0.8343 -5.6130 2.4578 52 1 -0.4832 -6.6059 7.0403 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272977785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:35 Heat of formation + Delta-G solvation = 24.292713 kcal Electronic energy + Delta-G solvation = -32765.202673 eV Core-core repulsion = 28765.127966 eV Total energy + Delta-G solvation = -4000.074707 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.68722 -42.02398 -38.71850 -37.57961 -35.61409 -34.56065 -34.32104 -33.53515 -31.74189 -30.99057 -29.07914 -28.77035 -28.28670 -27.02059 -25.84903 -24.36437 -23.21350 -22.34679 -21.56562 -21.14811 -20.31872 -19.81755 -19.07787 -18.26918 -17.57692 -17.25716 -16.73275 -16.45381 -16.16210 -16.01891 -15.71567 -15.58430 -15.10833 -14.81826 -14.75566 -14.59831 -14.27401 -14.24489 -14.15937 -13.77599 -13.68075 -13.49250 -13.28397 -13.23097 -13.04315 -13.01134 -12.88609 -12.81880 -12.69279 -12.27303 -12.18691 -12.01686 -11.97929 -11.96218 -11.78968 -11.53697 -11.43422 -11.42232 -10.99112 -10.82370 -10.22149 -9.69684 -9.51119 -9.07828 -8.35673 -6.39990 0.81985 1.27424 1.31864 1.42838 1.51708 1.63691 1.91624 2.13655 2.29536 2.98543 2.99677 3.38563 3.53581 3.67765 3.69531 3.73220 3.94394 4.06258 4.15566 4.22984 4.25671 4.31230 4.32471 4.42262 4.50898 4.53808 4.58658 4.67072 4.73245 4.77474 4.77724 4.78485 4.83235 4.91200 4.94254 5.01877 5.03900 5.08950 5.09800 5.15257 5.17454 5.19583 5.26416 5.28387 5.33138 5.49029 5.66768 5.74189 5.91989 5.93917 6.18643 6.28607 6.38873 6.66490 6.69791 7.18735 7.25716 8.80620 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.009394 B = 0.004341 C = 0.003483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2979.870246 B = 6448.475612 C = 8036.056308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.085 3.915 3 N -0.325 5.325 4 N -0.469 5.469 5 H 0.449 0.551 6 C 0.102 3.898 7 C -0.094 4.094 8 C -0.244 4.244 9 C 0.108 3.892 10 N -0.469 5.469 11 C 0.031 3.969 12 C -0.113 4.113 13 C -0.104 4.104 14 C 0.061 3.939 15 C -0.102 4.102 16 C 0.090 3.910 17 N -0.617 5.617 18 C 0.148 3.852 19 C -0.011 4.011 20 C -0.531 4.531 21 H 0.041 0.959 22 C 0.015 3.985 23 N -0.944 5.944 24 Si 0.942 3.058 25 H -0.254 1.254 26 H -0.284 1.284 27 H -0.264 1.264 28 C 0.488 3.512 29 O -0.572 6.572 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.042 0.958 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.093 0.907 42 H 0.055 0.945 43 H 0.114 0.886 44 H 0.083 0.917 45 H 0.131 0.869 46 H 0.084 0.916 47 H 0.099 0.901 48 H 0.089 0.911 49 H 0.050 0.950 50 H -0.004 1.004 51 H 0.026 0.974 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.473 11.570 -24.830 27.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.081 4.081 3 N -0.149 5.149 4 N -0.179 5.179 5 H 0.296 0.704 6 C -0.029 4.029 7 C -0.152 4.152 8 C -0.255 4.255 9 C -0.021 4.021 10 N -0.192 5.192 11 C -0.097 4.097 12 C -0.151 4.151 13 C -0.142 4.142 14 C -0.033 4.033 15 C -0.140 4.140 16 C -0.032 4.032 17 N -0.349 5.349 18 C 0.025 3.975 19 C -0.049 4.049 20 C -0.570 4.570 21 H 0.059 0.941 22 C -0.183 4.183 23 N -0.584 5.584 24 Si 0.766 3.234 25 H -0.179 1.179 26 H -0.209 1.209 27 H -0.188 1.188 28 C 0.276 3.724 29 O -0.453 6.453 30 H 0.092 0.908 31 H 0.101 0.899 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.111 0.889 35 H 0.086 0.914 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.061 0.939 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.133 0.867 44 H 0.102 0.898 45 H 0.149 0.851 46 H 0.102 0.898 47 H 0.117 0.883 48 H 0.107 0.893 49 H 0.068 0.932 50 H 0.015 0.985 51 H 0.044 0.956 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.581 13.167 -24.529 28.069 hybrid contribution 0.985 -0.642 1.877 2.215 sum 4.566 12.525 -22.652 26.284 Atomic orbital electron populations 1.20253 0.85489 1.04305 1.03109 1.22571 0.98052 0.89879 0.97645 1.77191 0.87366 1.22762 1.27544 1.46093 1.07240 1.04690 1.59857 0.70421 1.21135 0.97244 0.85260 0.99224 1.20657 0.92506 0.97552 1.04510 1.19582 0.92027 0.95369 1.18566 1.20684 1.00137 0.91088 0.90169 1.65113 1.28334 1.13250 1.12546 1.23430 0.90553 1.00363 0.95323 1.22539 1.00795 0.94549 0.97193 1.22321 1.00058 0.97799 0.94063 1.22256 0.98930 0.89193 0.92920 1.22702 0.91368 0.96932 1.02969 1.22529 0.88810 1.00152 0.91700 1.48740 1.17116 1.44744 1.24254 1.21144 1.00776 0.93166 0.82364 1.19701 0.96114 0.95507 0.93592 1.21277 1.43044 0.99504 0.93136 0.94070 1.25840 0.95332 1.02006 0.95122 1.70032 1.49199 1.38889 1.00308 0.85778 0.79937 0.80090 0.77588 1.17872 1.20928 1.18833 1.21996 0.83354 0.79508 0.87539 1.90592 1.25832 1.65284 1.63560 0.90771 0.89851 0.89312 0.88215 0.88863 0.91367 0.92497 0.92773 0.93943 0.90148 0.89769 0.88795 0.92633 0.86718 0.89843 0.85076 0.89755 0.88255 0.89253 0.93191 0.98547 0.95575 0.92315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.64 10.12 71.23 0.72 -0.92 16 2 C 0.08 2.36 7.22 43.10 0.31 2.67 16 3 N -0.32 -9.00 12.70 -47.38 -0.60 -9.60 16 4 N -0.47 -10.48 7.36 -48.00 -0.35 -10.83 16 5 H 0.45 6.77 8.96 -213.33 -1.91 4.85 16 6 C 0.10 2.46 6.63 41.40 0.27 2.73 16 7 C -0.09 -1.82 8.60 71.24 0.61 -1.21 16 8 C -0.24 -6.91 4.94 -20.14 -0.10 -7.01 16 9 C 0.11 3.30 3.95 85.56 0.34 3.63 16 10 N -0.47 -11.36 4.98 -844.27 -4.20 -15.56 16 11 C 0.03 0.64 4.66 86.63 0.40 1.05 16 12 C -0.11 -1.70 7.07 31.89 0.23 -1.48 16 13 C -0.10 -1.80 6.24 31.29 0.20 -1.60 16 14 C 0.06 1.41 0.76 3.05 0.00 1.41 16 15 C -0.10 -1.79 6.39 31.45 0.20 -1.59 16 16 C 0.09 1.91 7.36 86.88 0.64 2.55 16 17 N -0.62 -20.03 2.94 -818.13 -2.41 -22.44 16 18 C 0.15 5.96 5.88 86.38 0.51 6.46 16 19 C -0.01 -0.52 4.37 29.85 0.13 -0.39 16 20 C -0.53 -31.10 9.66 25.60 0.25 -30.85 16 21 H 0.04 2.60 7.99 -2.91 -0.02 2.58 16 22 C 0.01 0.88 5.47 84.66 0.46 1.35 16 23 N -0.94 -59.67 13.96 21.45 0.30 -59.37 16 24 Si 0.94 45.93 27.47 68.60 1.88 47.81 16 25 H -0.25 -11.47 7.11 99.48 0.71 -10.76 16 26 H -0.28 -13.60 7.11 99.48 0.71 -12.89 16 27 H -0.26 -12.72 6.54 99.48 0.65 -12.07 16 28 C 0.49 16.40 5.45 87.61 0.48 16.88 16 29 O -0.57 -24.02 15.09 -3.06 -0.05 -24.06 16 30 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 31 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.86 7.92 -2.39 -0.02 1.84 16 33 H 0.10 1.55 7.03 -2.38 -0.02 1.53 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.73 7.05 -2.39 -0.02 1.71 16 36 H 0.06 1.92 7.92 -2.39 -0.02 1.90 16 37 H 0.05 2.03 4.04 -2.39 -0.01 2.02 16 38 H 0.04 1.02 5.89 -2.39 -0.01 1.01 16 39 H 0.08 1.63 7.84 -2.38 -0.02 1.61 16 40 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.05 1.15 7.73 -2.39 -0.02 1.14 16 43 H 0.11 1.24 7.29 -2.39 -0.02 1.23 16 44 H 0.08 1.59 8.10 -2.39 -0.02 1.57 16 45 H 0.13 1.29 7.41 -2.39 -0.02 1.28 16 46 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 47 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 48 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 49 H 0.05 2.24 7.93 -2.39 -0.02 2.22 16 50 H 0.00 -0.21 7.20 -2.39 -0.02 -0.22 16 51 H 0.03 1.20 7.57 -2.38 -0.02 1.18 16 52 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -79.62 401.35 -0.81 -80.43 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -1.04 Total: 19.95 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 5.65 Total: -6.32 kcal Atomic # 7 Polarization: -110.54 SS G_CDS: -7.27 Total: -117.81 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 1.88 Total: 47.81 kcal Total: -79.62 -0.81 -80.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272977785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.725 kcal (2) G-P(sol) polarization free energy of solvation -79.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.432 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds