Wall clock time and date at job start Wed Apr 1 2020 03:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30845 * 125.89781 * 2 1 4 4 N 1.40084 * 108.20522 * 180.25803 * 3 2 1 5 5 H 0.96991 * 126.04087 * 179.74026 * 4 3 2 6 6 C 1.34951 * 107.92182 * 359.71975 * 4 3 2 7 7 C 1.50698 * 126.12380 * 179.97438 * 6 4 3 8 8 C 1.35309 * 107.74886 * 359.97438 * 6 4 3 9 9 C 1.50703 * 126.04021 * 179.97438 * 8 6 4 10 10 N 1.46895 * 109.47387 * 276.87154 * 9 8 6 11 11 C 1.48647 * 111.00222 * 284.13023 * 10 9 8 12 12 C 1.54636 * 104.63837 * 201.49170 * 11 10 9 13 13 C 1.53259 * 104.67392 * 23.67457 * 12 11 10 14 14 C 1.53621 * 111.05248 * 239.03580 * 13 12 11 15 15 C 1.54873 * 101.43410 * 214.76639 * 14 13 12 16 16 N 1.46879 * 105.43533 * 24.84864 * 15 14 13 17 17 C 1.46501 * 124.36706 * 163.08842 * 16 15 14 18 18 C 1.53000 * 109.46825 * 269.72022 * 17 16 15 19 19 C 1.50703 * 109.47155 * 179.97438 * 18 17 16 20 20 H 1.07993 * 119.99792 * 0.02562 * 19 18 17 21 21 C 1.37880 * 120.00047 * 179.97438 * 19 18 17 22 22 N 1.31513 * 120.00023 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99822 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47325 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.47135 * 120.00369 * 23 21 19 26 26 H 1.48495 * 109.47249 * 239.99874 * 23 21 19 27 27 C 1.34751 * 111.25751 * 342.81698 * 16 15 14 28 28 O 1.21279 * 125.13218 * 181.26376 * 27 16 15 29 29 C 1.48805 * 111.00301 * 168.51214 * 10 9 8 30 30 H 1.09002 * 109.47228 * 265.12586 * 1 2 3 31 31 H 1.08997 * 109.47250 * 25.12455 * 1 2 3 32 32 H 1.09000 * 109.46769 * 145.12775 * 1 2 3 33 33 H 1.09006 * 109.46953 * 274.89562 * 7 6 4 34 34 H 1.08996 * 109.47336 * 34.89479 * 7 6 4 35 35 H 1.08998 * 109.47265 * 154.90167 * 7 6 4 36 36 H 1.09007 * 109.47356 * 156.87136 * 9 8 6 37 37 H 1.09000 * 109.46910 * 36.87566 * 9 8 6 38 38 H 1.08999 * 110.40182 * 82.70113 * 11 10 9 39 39 H 1.08997 * 110.50356 * 320.33095 * 11 10 9 40 40 H 1.09003 * 110.39870 * 264.87748 * 12 11 10 41 41 H 1.09003 * 110.40276 * 142.46902 * 12 11 10 42 42 H 1.09006 * 111.02083 * 333.02119 * 14 13 12 43 43 H 1.09002 * 111.01721 * 96.91096 * 14 13 12 44 44 H 1.09001 * 110.37392 * 265.80825 * 15 14 13 45 45 H 1.09004 * 110.17237 * 143.78209 * 15 14 13 46 46 H 1.08996 * 109.47371 * 149.72309 * 17 16 15 47 47 H 1.09001 * 109.47507 * 29.71783 * 17 16 15 48 48 H 1.09006 * 109.47382 * 60.00277 * 18 17 16 49 49 H 1.08998 * 109.47592 * 300.00312 * 18 17 16 50 50 H 0.96995 * 119.99965 * 179.97438 * 22 21 19 51 51 H 1.09001 * 110.45407 * 39.48060 * 29 10 9 52 52 H 1.08996 * 110.45793 * 276.92031 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2743 1.0599 0.0000 4 7 3.6088 0.6342 -0.0060 5 1 4.3908 1.2080 -0.0109 6 6 3.6142 -0.7153 -0.0033 7 6 4.8350 -1.5988 -0.0083 8 6 2.3272 -1.1329 0.0047 9 6 1.8600 -2.5657 0.0097 10 7 1.8579 -3.0848 -1.3645 11 6 0.6972 -2.5599 -2.1305 12 6 0.5062 -3.5660 -3.2891 13 6 1.1412 -4.8659 -2.7830 14 6 2.2762 -5.3236 -3.7116 15 6 2.1353 -6.8639 -3.6326 16 7 0.7335 -7.1100 -3.2696 17 6 0.0533 -8.3984 -3.4238 18 6 -0.6000 -8.4680 -4.8056 19 6 -1.2991 -9.7935 -4.9645 20 1 -1.2799 -10.5140 -4.1602 21 6 -1.9643 -10.0860 -6.1363 22 7 -1.9882 -9.2084 -7.1155 23 14 -2.8315 -11.7287 -6.3329 24 1 -2.6572 -12.5317 -5.0959 25 1 -4.2788 -11.4988 -6.5734 26 1 -2.2486 -12.4614 -7.4855 27 6 0.1556 -5.9995 -2.7711 28 8 -0.9875 -5.9264 -2.3725 29 6 1.6714 -4.5611 -1.3766 30 1 -0.3634 -0.0873 1.0240 31 1 -0.3633 0.9304 -0.4363 32 1 -0.3633 -0.8431 -0.5876 33 1 5.1751 -1.7428 -1.0339 34 1 5.6268 -1.1279 0.5742 35 1 4.5862 -2.5648 0.4309 36 1 0.8511 -2.6175 0.4192 37 1 2.5325 -3.1650 0.6235 38 1 0.9181 -1.5669 -2.5220 39 1 -0.1930 -2.5304 -1.5022 40 1 1.0196 -3.2161 -4.1847 41 1 -0.5543 -3.7153 -3.4919 42 1 2.1182 -4.9645 -4.7286 43 1 3.2459 -5.0022 -3.3314 44 1 2.7992 -7.2670 -2.8678 45 1 2.3583 -7.3119 -4.6009 46 1 -0.7123 -8.4995 -2.6545 47 1 0.7781 -9.2063 -3.3235 48 1 0.1656 -8.3670 -5.5749 49 1 -1.3248 -7.6601 -4.9060 50 1 -2.4558 -9.4143 -7.9399 51 1 0.9435 -4.8593 -0.6220 52 1 2.6227 -5.0666 -1.2103 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272980399.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:28 Heat of formation + Delta-G solvation = 11.342014 kcal Electronic energy + Delta-G solvation = -30974.180005 eV Core-core repulsion = 26973.543714 eV Total energy + Delta-G solvation = -4000.636291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.35569 -41.96358 -39.06588 -37.44497 -35.84581 -34.64093 -34.23201 -32.98672 -31.49159 -30.41954 -29.24212 -28.93896 -28.07727 -26.95598 -25.93891 -24.24678 -23.52683 -22.41144 -21.54035 -21.03707 -20.27979 -19.68980 -18.69399 -18.25112 -17.37542 -17.25131 -16.77308 -16.48401 -16.14609 -15.89736 -15.50178 -15.42516 -15.00187 -14.68636 -14.64157 -14.52103 -14.35170 -14.16559 -14.06496 -14.03390 -13.61604 -13.44750 -13.27494 -13.20346 -13.08120 -13.00142 -12.88505 -12.65741 -12.55579 -12.45148 -12.33651 -12.09807 -11.98012 -11.93559 -11.70228 -11.61356 -11.38661 -11.30005 -10.66462 -10.59306 -10.15337 -9.53948 -9.53282 -9.22186 -8.24356 -6.37145 0.97879 1.38530 1.40184 1.52958 1.56772 1.71790 2.03885 2.17352 2.41353 3.07485 3.09192 3.44148 3.46123 3.60419 3.75112 3.83590 4.00373 4.06987 4.23193 4.24420 4.33274 4.36389 4.38273 4.45719 4.52457 4.61714 4.63010 4.70405 4.73610 4.76321 4.77317 4.84230 4.86912 4.89916 4.91605 4.98746 5.03241 5.06512 5.10268 5.17370 5.24982 5.25525 5.34389 5.37057 5.46849 5.60801 5.74800 5.81928 5.83676 6.06918 6.15059 6.32387 6.51746 6.78686 6.79884 7.23502 7.32854 8.88010 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.025943 B = 0.002068 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.040131 B =13533.203526 C =13988.387892 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.075 3.925 3 N -0.336 5.336 4 N -0.475 5.475 5 H 0.448 0.552 6 C 0.117 3.883 7 C -0.087 4.087 8 C -0.246 4.246 9 C 0.125 3.875 10 N -0.488 5.488 11 C 0.047 3.953 12 C -0.106 4.106 13 C -0.091 4.091 14 C -0.102 4.102 15 C 0.092 3.908 16 N -0.618 5.618 17 C 0.142 3.858 18 C 0.024 3.976 19 C -0.543 4.543 20 H 0.067 0.933 21 C -0.002 4.002 22 N -0.933 5.933 23 Si 0.971 3.029 24 H -0.258 1.258 25 H -0.282 1.282 26 H -0.273 1.273 27 C 0.509 3.491 28 O -0.586 6.586 29 C 0.064 3.936 30 H 0.085 0.915 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.038 0.962 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.039 0.961 40 H 0.093 0.907 41 H 0.046 0.954 42 H 0.080 0.920 43 H 0.133 0.867 44 H 0.103 0.897 45 H 0.076 0.924 46 H 0.051 0.949 47 H 0.093 0.907 48 H 0.001 0.999 49 H -0.030 1.030 50 H 0.264 0.736 51 H 0.032 0.968 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.220 17.072 15.428 29.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.092 4.092 3 N -0.160 5.160 4 N -0.185 5.185 5 H 0.294 0.706 6 C -0.013 4.013 7 C -0.145 4.145 8 C -0.257 4.257 9 C -0.004 4.004 10 N -0.212 5.212 11 C -0.081 4.081 12 C -0.145 4.145 13 C -0.095 4.095 14 C -0.139 4.139 15 C -0.030 4.030 16 N -0.350 5.350 17 C 0.020 3.980 18 C -0.014 4.014 19 C -0.581 4.581 20 H 0.085 0.915 21 C -0.200 4.200 22 N -0.573 5.573 23 Si 0.795 3.205 24 H -0.182 1.182 25 H -0.208 1.208 26 H -0.198 1.198 27 C 0.298 3.702 28 O -0.467 6.467 29 C -0.064 4.064 30 H 0.104 0.896 31 H 0.092 0.908 32 H 0.097 0.903 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.112 0.888 36 H 0.056 0.944 37 H 0.115 0.885 38 H 0.103 0.897 39 H 0.057 0.943 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.151 0.849 44 H 0.121 0.879 45 H 0.095 0.905 46 H 0.069 0.931 47 H 0.111 0.889 48 H 0.019 0.981 49 H -0.011 1.011 50 H 0.073 0.927 51 H 0.051 0.949 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 19.098 18.470 15.239 30.628 hybrid contribution -1.738 -1.372 -0.298 2.234 sum 17.360 17.098 14.941 28.582 Atomic orbital electron populations 1.20340 0.86418 1.03581 1.03616 1.22517 0.97499 0.90706 0.98433 1.77224 0.87804 1.23217 1.27794 1.46183 1.06937 1.05461 1.59908 0.70637 1.21364 0.97764 0.84687 0.97501 1.20564 0.91487 0.98049 1.04449 1.19554 0.91773 0.95273 1.19106 1.20430 0.99978 0.90707 0.89266 1.65581 1.39226 1.03209 1.13136 1.23099 0.92124 0.98407 0.94452 1.22220 0.99971 0.92641 0.99631 1.21355 0.95468 0.93382 0.99298 1.22734 0.99169 0.92480 0.99510 1.22529 0.80443 0.97696 1.02296 1.48765 1.13974 1.10676 1.61539 1.21352 0.95909 0.83362 0.97389 1.19213 0.94229 0.95258 0.92720 1.21581 1.33584 1.01999 1.00983 0.91467 1.26042 0.97058 1.01341 0.95522 1.70123 1.43980 1.37098 1.06080 0.85312 0.77769 0.78709 0.78722 1.18170 1.20839 1.19847 1.21222 0.87292 0.85746 0.75965 1.90641 1.20539 1.84694 1.50811 1.22880 1.01303 0.90147 0.92046 0.89649 0.90805 0.90298 0.89016 0.89531 0.88766 0.94378 0.88473 0.89741 0.94265 0.88816 0.93507 0.90172 0.84924 0.87939 0.90532 0.93068 0.88915 0.98054 1.01113 0.92708 0.94947 0.86205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.98 71.24 0.71 -0.68 16 2 C 0.07 1.53 7.22 43.10 0.31 1.84 16 3 N -0.34 -7.37 12.70 -47.38 -0.60 -7.97 16 4 N -0.48 -7.31 7.36 -48.01 -0.35 -7.66 16 5 H 0.45 4.04 8.96 -213.34 -1.91 2.13 16 6 C 0.12 1.65 7.21 41.40 0.30 1.95 16 7 C -0.09 -0.57 10.26 71.24 0.73 0.16 16 8 C -0.25 -4.33 5.31 -20.15 -0.11 -4.43 16 9 C 0.12 2.04 4.84 85.56 0.41 2.45 16 10 N -0.49 -8.75 5.32 -886.66 -4.72 -13.47 16 11 C 0.05 1.02 5.34 86.52 0.46 1.48 16 12 C -0.11 -2.72 6.27 31.24 0.20 -2.52 16 13 C -0.09 -2.31 0.83 -52.66 -0.04 -2.35 16 14 C -0.10 -1.96 6.09 31.44 0.19 -1.77 16 15 C 0.09 2.18 7.37 86.95 0.64 2.82 16 16 N -0.62 -22.19 2.94 -817.84 -2.41 -24.59 16 17 C 0.14 6.09 5.89 86.38 0.51 6.60 16 18 C 0.02 1.31 5.30 29.85 0.16 1.46 16 19 C -0.54 -31.41 9.11 25.60 0.23 -31.17 16 20 H 0.07 3.67 7.74 -2.91 -0.02 3.64 16 21 C 0.00 -0.10 5.46 84.66 0.46 0.37 16 22 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 23 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 25 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 C 0.51 19.15 6.65 87.51 0.58 19.74 16 28 O -0.59 -28.04 17.16 -3.03 -0.05 -28.09 16 29 C 0.06 1.27 5.51 86.06 0.47 1.75 16 30 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.08 1.35 5.62 -2.39 -0.01 1.34 16 33 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 34 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.09 0.52 7.17 -2.39 -0.02 0.50 16 36 H 0.04 0.70 7.33 -2.38 -0.02 0.68 16 37 H 0.10 1.23 7.24 -2.39 -0.02 1.21 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 0.92 6.38 -2.39 -0.02 0.91 16 40 H 0.09 2.09 7.44 -2.39 -0.02 2.07 16 41 H 0.05 1.51 7.47 -2.39 -0.02 1.49 16 42 H 0.08 1.63 7.61 -2.38 -0.02 1.61 16 43 H 0.13 1.56 7.70 -2.39 -0.02 1.54 16 44 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 45 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 46 H 0.05 2.37 7.93 -2.39 -0.02 2.35 16 47 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 48 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 49 H -0.03 -1.89 8.14 -2.39 -0.02 -1.91 16 50 H 0.26 15.34 8.31 -92.71 -0.77 14.57 16 51 H 0.03 0.78 7.77 -2.39 -0.02 0.76 16 52 H 0.12 1.65 7.68 -2.39 -0.02 1.64 16 Total: -1.00 -81.96 412.01 -0.58 -82.54 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -0.99 Total: 12.52 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 6.22 Total: -2.30 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -7.79 Total: -111.46 kcal Atomic # 8 Polarization: -28.04 SS G_CDS: -0.05 Total: -28.09 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -81.96 -0.58 -82.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272980399.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.885 kcal (2) G-P(sol) polarization free energy of solvation -81.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds