Wall clock time and date at job start Wed Apr 1 2020 04:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34129 * 125.98993 * 2 1 4 4 C 1.30497 * 109.25037 * 179.97438 * 3 2 1 5 5 N 1.35038 * 108.70343 * 359.77289 * 4 3 2 6 6 C 1.46507 * 126.39669 * 180.26730 * 5 4 3 7 7 C 1.34672 * 125.98569 * 179.97438 * 2 1 3 8 8 C 1.50692 * 126.59131 * 359.97325 * 7 2 1 9 9 N 1.46903 * 109.46955 * 276.98825 * 8 7 2 10 10 C 1.48661 * 110.99861 * 284.19240 * 9 8 7 11 11 C 1.54642 * 104.63138 * 201.48949 * 10 9 8 12 12 C 1.53251 * 104.67387 * 23.69159 * 11 10 9 13 13 C 1.53607 * 111.07696 * 120.47117 * 12 11 10 14 14 C 1.54874 * 101.44081 * 97.10978 * 13 12 11 15 15 N 1.46883 * 105.43692 * 24.84181 * 14 13 12 16 16 C 1.46502 * 124.37309 * 163.07993 * 15 14 13 17 17 C 1.52996 * 109.47226 * 269.72451 * 16 15 14 18 18 C 1.50696 * 109.47020 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00453 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00199 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99505 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00197 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46868 * 89.99974 * 22 20 18 24 24 H 1.48507 * 109.46826 * 209.99730 * 22 20 18 25 25 H 1.48500 * 109.47076 * 329.99821 * 22 20 18 26 26 C 1.34753 * 111.25675 * 342.81501 * 15 14 13 27 27 O 1.21281 * 125.13709 * 181.28047 * 26 15 14 28 28 C 1.48802 * 111.00017 * 168.58223 * 9 8 7 29 29 H 1.08996 * 109.47686 * 270.00717 * 1 2 3 30 30 H 1.09004 * 109.46573 * 30.00764 * 1 2 3 31 31 H 1.09001 * 109.46925 * 149.99603 * 1 2 3 32 32 H 1.08005 * 125.64637 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.46965 * 275.31060 * 6 5 4 34 34 H 1.09000 * 109.47295 * 35.31082 * 6 5 4 35 35 H 1.09002 * 109.46839 * 155.30940 * 6 5 4 36 36 H 1.09005 * 109.47097 * 156.99092 * 8 7 2 37 37 H 1.08997 * 109.47464 * 36.98735 * 8 7 2 38 38 H 1.08998 * 110.39711 * 82.70254 * 10 9 8 39 39 H 1.08996 * 110.50412 * 320.32678 * 10 9 8 40 40 H 1.09001 * 110.39356 * 264.88986 * 11 10 9 41 41 H 1.08998 * 110.39151 * 142.49038 * 11 10 9 42 42 H 1.09000 * 111.01710 * 215.36451 * 13 12 11 43 43 H 1.08994 * 111.01729 * 339.25622 * 13 12 11 44 44 H 1.08997 * 110.38087 * 265.80262 * 14 13 12 45 45 H 1.09001 * 110.17371 * 143.77116 * 14 13 12 46 46 H 1.09000 * 109.46922 * 149.72624 * 16 15 14 47 47 H 1.08995 * 109.47108 * 29.72541 * 16 15 14 48 48 H 1.09000 * 109.47298 * 59.99759 * 17 16 15 49 49 H 1.09008 * 109.47003 * 299.99763 * 17 16 15 50 50 H 0.97003 * 119.99904 * 180.02562 * 21 20 18 51 51 H 1.08999 * 110.45753 * 39.47189 * 28 9 8 52 52 H 1.09000 * 110.45450 * 276.91058 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2953 1.0853 0.0000 4 6 3.5449 0.7094 0.0006 5 7 3.5912 -0.6402 0.0060 6 6 4.7996 -1.4686 0.0139 7 6 2.2984 -1.0897 0.0005 8 6 1.8472 -2.5275 0.0017 9 7 1.5403 -2.9432 1.3768 10 6 2.7863 -3.1834 2.1514 11 6 2.3520 -4.1068 3.3134 12 6 1.0843 -4.8013 2.8044 13 6 1.2618 -6.3269 2.7805 14 6 0.6013 -6.7341 4.1208 15 7 -0.3520 -5.6600 4.4291 16 6 -1.4445 -5.7767 5.3981 17 6 -2.7013 -6.2875 4.6907 18 6 -3.8253 -6.4069 5.6874 19 1 -3.6597 -6.1451 6.7221 20 6 -5.0648 -6.8514 5.2787 21 7 -5.2663 -7.1707 4.0189 22 14 -6.4578 -7.0001 6.5143 23 1 -7.2099 -5.7208 6.5687 24 1 -7.3722 -8.0946 6.1001 25 1 -5.8989 -7.3033 7.8563 26 6 -0.0884 -4.5514 3.7097 27 8 -0.7044 -3.5093 3.7824 28 6 0.8366 -4.2542 1.3931 29 1 -0.3634 0.0001 1.0276 30 1 -0.3632 0.8900 -0.5140 31 1 -0.3633 -0.8900 -0.5139 32 1 4.4005 1.3686 0.0011 33 1 5.1570 -1.5995 -1.0075 34 1 5.5711 -0.9800 0.6090 35 1 4.5696 -2.4424 0.4461 36 1 2.6408 -3.1577 -0.3999 37 1 0.9550 -2.6289 -0.6161 38 1 3.1796 -2.2438 2.5392 39 1 3.5322 -3.6794 1.5304 40 1 2.1314 -3.5183 4.2040 41 1 3.1287 -4.8415 3.5252 42 1 0.7382 -6.7681 1.9325 43 1 2.3176 -6.5974 2.7698 44 1 1.3525 -6.8085 4.9070 45 1 0.0768 -7.6829 4.0084 46 1 -1.6465 -4.7997 5.8373 47 1 -1.1601 -6.4765 6.1838 48 1 -2.4993 -7.2644 4.2515 49 1 -2.9858 -5.5876 3.9050 50 1 -6.1384 -7.4831 3.7313 51 1 1.2610 -4.9238 0.6451 52 1 -0.2307 -4.1158 1.2201 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274351837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:11 Heat of formation + Delta-G solvation = 36.766917 kcal Electronic energy + Delta-G solvation = -31244.597953 eV Core-core repulsion = 27245.064168 eV Total energy + Delta-G solvation = -3999.533785 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.28471 -40.87811 -38.03018 -35.93512 -34.56580 -34.23275 -32.95500 -31.56530 -30.27669 -29.22822 -28.58463 -27.92205 -26.41370 -25.23073 -24.81514 -23.25489 -21.98984 -21.59997 -20.87541 -20.33167 -19.46849 -18.55894 -17.06780 -16.61221 -16.59945 -16.12338 -15.67647 -15.25304 -15.08016 -14.91653 -14.83136 -14.38989 -14.21612 -13.89718 -13.62712 -13.39117 -13.27886 -13.09561 -12.71529 -12.67074 -12.60896 -12.36442 -12.23935 -12.18306 -12.10379 -12.04225 -11.86536 -11.78439 -11.42209 -11.27717 -10.96711 -10.92018 -10.72840 -10.65310 -9.99745 -9.97132 -9.85578 -9.63200 -9.29867 -9.03349 -8.63601 -8.36301 -8.25826 -7.97412 -6.01651 -4.04899 1.83170 2.56496 3.03221 3.06291 3.32788 3.38582 3.40965 3.57931 3.82511 4.26443 4.30887 4.32734 4.42883 4.46511 4.50391 4.59097 4.67315 4.76522 4.79355 4.84504 4.98283 5.08768 5.11228 5.25885 5.31455 5.34641 5.35629 5.39319 5.44541 5.53322 5.62277 5.71110 5.77620 5.83965 5.90020 5.92774 6.02432 6.07760 6.08908 6.10880 6.21716 6.49069 6.62013 6.71145 6.80225 6.82962 7.04814 7.05762 7.53272 7.68588 7.87687 7.98580 8.00767 8.35047 8.75954 9.01916 9.59125 11.09785 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016470 B = 0.002395 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.640221 B =11688.440431 C =12735.592787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.029 3.971 3 N -0.493 5.493 4 C 0.180 3.820 5 N -0.461 5.461 6 C 0.069 3.931 7 C -0.019 4.019 8 C 0.123 3.877 9 N -0.492 5.492 10 C 0.037 3.963 11 C -0.099 4.099 12 C -0.099 4.099 13 C -0.123 4.123 14 C 0.103 3.897 15 N -0.615 5.615 16 C 0.129 3.871 17 C 0.013 3.987 18 C -0.522 4.522 19 H 0.057 0.943 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.894 3.106 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.527 3.473 27 O -0.513 6.513 28 C 0.059 3.941 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.066 0.934 32 H 0.202 0.798 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.040 0.960 37 H 0.098 0.902 38 H 0.077 0.923 39 H 0.041 0.959 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.086 0.914 44 H 0.065 0.935 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.064 0.936 48 H 0.016 0.984 49 H 0.021 0.979 50 H 0.261 0.739 51 H 0.053 0.947 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.288 5.201 -10.035 27.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.101 4.101 3 N -0.212 5.212 4 C -0.102 4.102 5 N -0.145 5.145 6 C -0.074 4.074 7 C -0.133 4.133 8 C -0.006 4.006 9 N -0.216 5.216 10 C -0.091 4.091 11 C -0.137 4.137 12 C -0.104 4.104 13 C -0.161 4.161 14 C -0.021 4.021 15 N -0.349 5.349 16 C 0.009 3.991 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.313 3.687 27 O -0.388 6.388 28 C -0.069 4.069 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.219 0.781 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.058 0.942 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.104 0.896 44 H 0.083 0.917 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.082 0.918 48 H 0.035 0.965 49 H 0.039 0.961 50 H 0.071 0.929 51 H 0.071 0.929 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 24.270 6.824 -9.815 27.054 hybrid contribution 0.202 -1.669 0.261 1.701 sum 24.472 5.155 -9.554 26.772 Atomic orbital electron populations 1.20030 0.87394 1.01930 1.02951 1.20506 0.96488 0.87579 1.05532 1.70197 1.00442 1.30634 1.19902 1.24818 0.97267 0.81577 1.06557 1.45191 1.06260 1.07699 1.55368 1.22083 0.85708 0.96212 1.03392 1.20667 0.83166 0.96527 1.12936 1.20506 1.00295 0.88744 0.91020 1.65476 1.17767 1.27258 1.11085 1.23222 0.91664 0.99129 0.95045 1.22145 0.94789 0.98063 0.98705 1.21401 0.96272 0.96295 0.96389 1.22719 1.01717 0.93225 0.98426 1.22060 0.91983 0.92234 0.95811 1.48648 1.30899 1.13185 1.42145 1.21776 0.86162 1.01403 0.89793 1.19395 0.90385 0.96396 0.96343 1.21090 0.95399 1.44449 0.95123 0.92510 1.25000 0.98715 0.95303 0.95251 1.69974 1.23242 1.44770 1.15193 0.86558 0.82042 0.77781 0.81407 1.20538 1.21219 1.19836 1.20039 0.84116 0.83564 0.81023 1.90729 1.53644 1.27370 1.67010 1.22906 1.01148 0.88876 0.93920 0.90648 0.91749 0.91513 0.78112 0.90671 0.89507 0.89765 0.94174 0.88342 0.90446 0.94139 0.90460 0.90345 0.89694 0.89574 0.91723 0.90144 0.91182 0.91777 0.96541 0.96090 0.92949 0.92882 0.88843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.22 36.01 0.37 -0.46 16 2 C 0.03 0.39 7.09 -82.85 -0.59 -0.20 16 3 N -0.49 -6.80 11.25 -10.87 -0.12 -6.93 16 4 C 0.18 1.82 12.56 -90.38 -1.14 0.68 16 5 N -0.46 -4.19 3.15 -121.36 -0.38 -4.57 16 6 C 0.07 0.32 10.91 59.85 0.65 0.98 16 7 C -0.02 -0.22 6.16 -81.61 -0.50 -0.72 16 8 C 0.12 1.23 4.73 -4.98 -0.02 1.21 16 9 N -0.49 -5.87 5.32 -231.59 -1.23 -7.10 16 10 C 0.04 0.36 5.45 -1.98 -0.01 0.35 16 11 C -0.10 -1.05 6.32 -25.74 -0.16 -1.21 16 12 C -0.10 -1.27 0.83 -155.25 -0.13 -1.40 16 13 C -0.12 -1.25 6.12 -25.43 -0.16 -1.41 16 14 C 0.10 1.32 7.37 -2.85 -0.02 1.30 16 15 N -0.62 -11.04 2.94 -172.42 -0.51 -11.55 16 16 C 0.13 2.74 5.89 -4.04 -0.02 2.71 16 17 C 0.01 0.33 5.30 -27.89 -0.15 0.19 16 18 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -27.05 13.29 55.43 0.74 -26.31 16 22 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 23 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.53 9.72 6.49 -11.22 -0.07 9.64 16 27 O -0.51 -11.82 17.46 5.56 0.10 -11.73 16 28 C 0.06 0.72 5.42 -2.58 -0.01 0.71 16 29 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.76 7.33 -51.93 -0.38 0.38 16 32 H 0.20 1.22 8.06 -52.48 -0.42 0.80 16 33 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 35 H 0.08 0.38 5.17 -51.93 -0.27 0.11 16 36 H 0.04 0.32 7.03 -51.93 -0.37 -0.04 16 37 H 0.10 0.97 7.33 -51.93 -0.38 0.59 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.04 0.30 6.38 -51.93 -0.33 -0.03 16 40 H 0.08 0.99 7.76 -51.93 -0.40 0.59 16 41 H 0.08 0.62 7.32 -51.93 -0.38 0.24 16 42 H 0.08 0.85 7.89 -51.93 -0.41 0.44 16 43 H 0.09 0.61 7.43 -51.93 -0.39 0.22 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.07 1.59 7.93 -51.93 -0.41 1.17 16 47 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.02 0.62 8.14 -51.92 -0.42 0.19 16 50 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 51 H 0.05 0.50 7.70 -51.93 -0.40 0.10 16 52 H 0.09 1.38 7.84 -51.93 -0.41 0.97 16 LS Contribution 412.34 15.07 6.21 6.21 Total: -1.00 -37.24 412.34 -11.31 -48.55 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -8.71 Total: -2.19 kcal Atomic # 6 Polarization: 1.18 SS G_CDS: -2.38 Total: -1.19 kcal Atomic # 7 Polarization: -54.94 SS G_CDS: -1.51 Total: -56.45 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.10 Total: -11.73 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -37.24 -11.31 -48.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274351837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.314 kcal (2) G-P(sol) polarization free energy of solvation -37.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds