Wall clock time and date at job start Wed Apr 1 2020 04:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.34129 * 125.98993 * 2 1 4 4 C 1.30497 * 109.25037 * 179.97438 * 3 2 1 5 5 N 1.35038 * 108.70343 * 359.77289 * 4 3 2 6 6 C 1.46507 * 126.39669 * 180.26730 * 5 4 3 7 7 C 1.34672 * 125.98569 * 179.97438 * 2 1 3 8 8 C 1.50692 * 126.59131 * 359.97325 * 7 2 1 9 9 N 1.46903 * 109.46955 * 276.98825 * 8 7 2 10 10 C 1.48661 * 110.99861 * 284.19240 * 9 8 7 11 11 C 1.54642 * 104.63138 * 201.48949 * 10 9 8 12 12 C 1.53251 * 104.67387 * 23.69159 * 11 10 9 13 13 C 1.53607 * 111.07696 * 120.47117 * 12 11 10 14 14 C 1.54874 * 101.44081 * 97.10978 * 13 12 11 15 15 N 1.46883 * 105.43692 * 24.84181 * 14 13 12 16 16 C 1.46502 * 124.37309 * 163.07993 * 15 14 13 17 17 C 1.52996 * 109.47226 * 269.72451 * 16 15 14 18 18 C 1.50696 * 109.47020 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00453 * 359.97438 * 18 17 16 20 20 C 1.37882 * 120.00199 * 180.02562 * 18 17 16 21 21 N 1.31517 * 119.99505 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00197 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46868 * 89.99974 * 22 20 18 24 24 H 1.48507 * 109.46826 * 209.99730 * 22 20 18 25 25 H 1.48500 * 109.47076 * 329.99821 * 22 20 18 26 26 C 1.34753 * 111.25675 * 342.81501 * 15 14 13 27 27 O 1.21281 * 125.13709 * 181.28047 * 26 15 14 28 28 C 1.48802 * 111.00017 * 168.58223 * 9 8 7 29 29 H 1.08996 * 109.47686 * 270.00717 * 1 2 3 30 30 H 1.09004 * 109.46573 * 30.00764 * 1 2 3 31 31 H 1.09001 * 109.46925 * 149.99603 * 1 2 3 32 32 H 1.08005 * 125.64637 * 180.02562 * 4 3 2 33 33 H 1.09001 * 109.46965 * 275.31060 * 6 5 4 34 34 H 1.09000 * 109.47295 * 35.31082 * 6 5 4 35 35 H 1.09002 * 109.46839 * 155.30940 * 6 5 4 36 36 H 1.09005 * 109.47097 * 156.99092 * 8 7 2 37 37 H 1.08997 * 109.47464 * 36.98735 * 8 7 2 38 38 H 1.08998 * 110.39711 * 82.70254 * 10 9 8 39 39 H 1.08996 * 110.50412 * 320.32678 * 10 9 8 40 40 H 1.09001 * 110.39356 * 264.88986 * 11 10 9 41 41 H 1.08998 * 110.39151 * 142.49038 * 11 10 9 42 42 H 1.09000 * 111.01710 * 215.36451 * 13 12 11 43 43 H 1.08994 * 111.01729 * 339.25622 * 13 12 11 44 44 H 1.08997 * 110.38087 * 265.80262 * 14 13 12 45 45 H 1.09001 * 110.17371 * 143.77116 * 14 13 12 46 46 H 1.09000 * 109.46922 * 149.72624 * 16 15 14 47 47 H 1.08995 * 109.47108 * 29.72541 * 16 15 14 48 48 H 1.09000 * 109.47298 * 59.99759 * 17 16 15 49 49 H 1.09008 * 109.47003 * 299.99763 * 17 16 15 50 50 H 0.97003 * 119.99904 * 180.02562 * 21 20 18 51 51 H 1.08999 * 110.45753 * 39.47189 * 28 9 8 52 52 H 1.09000 * 110.45450 * 276.91058 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2953 1.0853 0.0000 4 6 3.5449 0.7094 0.0006 5 7 3.5912 -0.6402 0.0060 6 6 4.7996 -1.4686 0.0139 7 6 2.2984 -1.0897 0.0005 8 6 1.8472 -2.5275 0.0017 9 7 1.5403 -2.9432 1.3768 10 6 2.7863 -3.1834 2.1514 11 6 2.3520 -4.1068 3.3134 12 6 1.0843 -4.8013 2.8044 13 6 1.2618 -6.3269 2.7805 14 6 0.6013 -6.7341 4.1208 15 7 -0.3520 -5.6600 4.4291 16 6 -1.4445 -5.7767 5.3981 17 6 -2.7013 -6.2875 4.6907 18 6 -3.8253 -6.4069 5.6874 19 1 -3.6597 -6.1451 6.7221 20 6 -5.0648 -6.8514 5.2787 21 7 -5.2663 -7.1707 4.0189 22 14 -6.4578 -7.0001 6.5143 23 1 -7.2099 -5.7208 6.5687 24 1 -7.3722 -8.0946 6.1001 25 1 -5.8989 -7.3033 7.8563 26 6 -0.0884 -4.5514 3.7097 27 8 -0.7044 -3.5093 3.7824 28 6 0.8366 -4.2542 1.3931 29 1 -0.3634 0.0001 1.0276 30 1 -0.3632 0.8900 -0.5140 31 1 -0.3633 -0.8900 -0.5139 32 1 4.4005 1.3686 0.0011 33 1 5.1570 -1.5995 -1.0075 34 1 5.5711 -0.9800 0.6090 35 1 4.5696 -2.4424 0.4461 36 1 2.6408 -3.1577 -0.3999 37 1 0.9550 -2.6289 -0.6161 38 1 3.1796 -2.2438 2.5392 39 1 3.5322 -3.6794 1.5304 40 1 2.1314 -3.5183 4.2040 41 1 3.1287 -4.8415 3.5252 42 1 0.7382 -6.7681 1.9325 43 1 2.3176 -6.5974 2.7698 44 1 1.3525 -6.8085 4.9070 45 1 0.0768 -7.6829 4.0084 46 1 -1.6465 -4.7997 5.8373 47 1 -1.1601 -6.4765 6.1838 48 1 -2.4993 -7.2644 4.2515 49 1 -2.9858 -5.5876 3.9050 50 1 -6.1384 -7.4831 3.7313 51 1 1.2610 -4.9238 0.6451 52 1 -0.2307 -4.1158 1.2201 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274351837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:10 Heat of formation + Delta-G solvation = 11.310386 kcal Electronic energy + Delta-G solvation = -31245.701831 eV Core-core repulsion = 27245.064168 eV Total energy + Delta-G solvation = -4000.637663 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.06622 -42.03151 -39.11966 -37.41217 -35.88736 -35.22528 -34.54349 -32.87375 -31.38627 -30.54063 -29.49923 -28.87530 -27.24301 -26.86036 -25.85051 -24.31672 -23.54095 -22.58926 -21.66793 -21.60905 -20.34126 -19.84880 -18.69294 -17.74076 -17.56356 -17.19374 -16.91381 -16.63537 -16.24452 -15.99069 -15.77210 -15.75288 -15.30982 -14.95792 -14.56524 -14.43323 -14.34635 -14.31142 -14.19612 -13.77233 -13.65794 -13.46706 -13.41136 -13.16182 -13.08659 -13.00990 -12.93138 -12.84092 -12.73290 -12.65047 -12.56272 -12.30142 -12.00641 -11.92720 -11.78067 -11.54799 -11.41105 -10.85464 -10.63052 -10.52435 -10.38503 -9.51515 -9.40272 -9.10921 -8.24970 -6.37718 1.04981 1.37615 1.40555 1.50932 1.65423 1.95255 2.16431 2.19250 2.41135 3.01757 3.08435 3.27062 3.43786 3.54834 3.73399 3.84619 3.92251 3.93770 4.01845 4.11036 4.18877 4.29472 4.35689 4.39192 4.44885 4.48859 4.51373 4.52694 4.58035 4.63834 4.71665 4.74948 4.77013 4.84249 4.84958 4.87773 4.94762 4.99553 5.06421 5.09386 5.13423 5.22544 5.32971 5.41247 5.46389 5.60676 5.79442 5.83280 5.87316 6.03331 6.15074 6.36148 6.39032 6.77542 7.18931 7.30454 7.33144 8.87204 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016470 B = 0.002395 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.640221 B =11688.440431 C =12735.592787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C -0.015 4.015 3 N -0.541 5.541 4 C 0.184 3.816 5 N -0.455 5.455 6 C 0.061 3.939 7 C -0.016 4.016 8 C 0.128 3.872 9 N -0.526 5.526 10 C 0.044 3.956 11 C -0.093 4.093 12 C -0.091 4.091 13 C -0.107 4.107 14 C 0.092 3.908 15 N -0.624 5.624 16 C 0.143 3.857 17 C 0.026 3.974 18 C -0.546 4.546 19 H 0.065 0.935 20 C 0.001 3.999 21 N -0.932 5.932 22 Si 0.969 3.031 23 H -0.278 1.278 24 H -0.278 1.278 25 H -0.257 1.257 26 C 0.509 3.491 27 O -0.578 6.578 28 C 0.064 3.936 29 H 0.048 0.952 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.239 0.761 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.091 0.909 36 H 0.073 0.927 37 H 0.090 0.910 38 H 0.065 0.935 39 H 0.082 0.918 40 H 0.045 0.955 41 H 0.123 0.877 42 H 0.087 0.913 43 H 0.139 0.861 44 H 0.097 0.903 45 H 0.077 0.923 46 H 0.046 0.954 47 H 0.090 0.910 48 H 0.003 0.997 49 H -0.030 1.030 50 H 0.265 0.735 51 H 0.092 0.908 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.280 3.033 -10.007 31.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.144 4.144 3 N -0.261 5.261 4 C -0.099 4.099 5 N -0.138 5.138 6 C -0.080 4.080 7 C -0.131 4.131 8 C 0.000 4.000 9 N -0.250 5.250 10 C -0.083 4.083 11 C -0.132 4.132 12 C -0.095 4.095 13 C -0.145 4.145 14 C -0.029 4.029 15 N -0.357 5.357 16 C 0.021 3.979 17 C -0.012 4.012 18 C -0.584 4.584 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.571 5.571 22 Si 0.793 3.207 23 H -0.203 1.203 24 H -0.203 1.203 25 H -0.181 1.181 26 C 0.298 3.702 27 O -0.457 6.457 28 C -0.064 4.064 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.255 0.745 33 H 0.112 0.888 34 H 0.128 0.872 35 H 0.110 0.890 36 H 0.091 0.909 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.141 0.859 42 H 0.106 0.894 43 H 0.157 0.843 44 H 0.116 0.884 45 H 0.095 0.905 46 H 0.064 0.936 47 H 0.108 0.892 48 H 0.021 0.979 49 H -0.011 1.011 50 H 0.073 0.927 51 H 0.110 0.890 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 28.328 4.606 -9.789 30.323 hybrid contribution -1.018 -0.956 0.237 1.416 sum 27.310 3.649 -9.552 29.162 Atomic orbital electron populations 1.19906 0.88349 1.02176 1.01262 1.20655 0.96648 0.88910 1.08172 1.70110 1.02290 1.31707 1.21956 1.25513 0.97124 0.82604 1.04617 1.45415 1.06694 1.07769 1.53906 1.22448 0.84240 0.96052 1.05222 1.20786 0.84038 0.96557 1.11747 1.20492 1.01031 0.88362 0.90159 1.65340 1.19556 1.27566 1.12556 1.23225 0.91419 0.98837 0.94860 1.22207 0.94530 0.98688 0.97726 1.21393 0.94329 0.98714 0.95114 1.22830 1.04586 0.90369 0.96675 1.22478 0.91579 0.90252 0.98637 1.48792 1.30626 1.14963 1.41276 1.21301 0.85740 1.00297 0.90583 1.19186 0.92671 0.94313 0.95012 1.21549 0.96487 1.44498 0.95879 0.91685 1.26018 1.01735 0.94649 0.97360 1.70112 1.24165 1.45487 1.17385 0.85385 0.78226 0.77846 0.79217 1.20350 1.20293 1.18078 1.21231 0.85189 0.82599 0.81228 1.90677 1.56242 1.29909 1.68905 1.22806 0.99196 0.89918 0.94498 0.93281 0.91840 0.90911 0.74476 0.88784 0.87228 0.89011 0.90917 0.89138 0.91648 0.90048 0.93588 0.85890 0.89437 0.84317 0.88446 0.90502 0.93550 0.89207 0.97908 1.01131 0.92660 0.89016 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.68 10.22 71.24 0.73 -0.95 16 2 C -0.01 -0.42 7.09 41.39 0.29 -0.13 16 3 N -0.54 -15.27 11.25 -188.31 -2.12 -17.39 16 4 C 0.18 3.45 12.56 180.26 2.26 5.71 16 5 N -0.46 -7.18 3.15 -537.88 -1.70 -8.87 16 6 C 0.06 0.30 10.91 127.77 1.39 1.70 16 7 C -0.02 -0.35 6.16 40.95 0.25 -0.10 16 8 C 0.13 2.36 4.73 85.55 0.40 2.77 16 9 N -0.53 -12.05 5.32 -886.63 -4.72 -16.77 16 10 C 0.04 0.72 5.45 86.52 0.47 1.19 16 11 C -0.09 -1.70 6.32 31.24 0.20 -1.51 16 12 C -0.09 -2.19 0.83 -52.66 -0.04 -2.23 16 13 C -0.11 -1.75 6.12 31.44 0.19 -1.56 16 14 C 0.09 2.14 7.37 86.95 0.64 2.78 16 15 N -0.62 -22.81 2.94 -817.81 -2.41 -25.22 16 16 C 0.14 6.32 5.89 86.38 0.51 6.83 16 17 C 0.03 1.45 5.30 29.85 0.16 1.61 16 18 C -0.55 -32.03 9.11 25.60 0.23 -31.80 16 19 H 0.06 3.62 7.74 -2.91 -0.02 3.59 16 20 C 0.00 0.03 5.46 84.66 0.46 0.49 16 21 N -0.93 -58.24 13.29 21.45 0.28 -57.95 16 22 Si 0.97 45.26 29.54 68.60 2.03 47.29 16 23 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 26 C 0.51 19.59 6.49 87.52 0.57 20.16 16 27 O -0.58 -29.06 17.46 -3.03 -0.05 -29.11 16 28 C 0.06 1.49 5.42 86.06 0.47 1.95 16 29 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.07 1.87 7.33 -2.39 -0.02 1.85 16 32 H 0.24 2.23 8.06 -2.91 -0.02 2.20 16 33 H 0.09 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 35 H 0.09 0.34 5.17 -2.39 -0.01 0.33 16 36 H 0.07 0.85 7.03 -2.38 -0.02 0.84 16 37 H 0.09 1.77 7.33 -2.39 -0.02 1.76 16 38 H 0.07 1.24 8.14 -2.39 -0.02 1.23 16 39 H 0.08 0.69 6.38 -2.39 -0.02 0.67 16 40 H 0.05 1.14 7.76 -2.39 -0.02 1.12 16 41 H 0.12 1.16 7.32 -2.39 -0.02 1.14 16 42 H 0.09 1.43 7.89 -2.39 -0.02 1.42 16 43 H 0.14 0.92 7.43 -2.39 -0.02 0.90 16 44 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 46 H 0.05 2.24 7.93 -2.39 -0.02 2.22 16 47 H 0.09 3.47 8.14 -2.39 -0.02 3.45 16 48 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 49 H -0.03 -1.93 8.14 -2.38 -0.02 -1.95 16 50 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 51 H 0.09 1.41 7.70 -2.39 -0.02 1.39 16 52 H 0.05 1.61 7.84 -2.39 -0.02 1.59 16 Total: -1.00 -91.40 412.34 1.41 -89.98 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 0.90 Total: 11.13 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: 9.19 Total: 6.92 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -10.65 Total: -126.21 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.05 Total: -29.11 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -91.40 1.41 -89.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274351837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.291 kcal (2) G-P(sol) polarization free energy of solvation -91.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.980 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds