Wall clock time and date at job start Wed Apr 1 2020 04:53:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34128 * 125.98373 * 2 1 4 4 C 1.30506 * 109.25523 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.69603 * 359.97438 * 4 3 2 6 6 C 1.46508 * 126.39414 * 180.02562 * 5 4 3 7 7 C 1.34664 * 125.99452 * 180.35295 * 2 1 3 8 8 C 1.50703 * 126.59269 * 359.97438 * 7 2 1 9 9 N 1.46907 * 109.46648 * 79.50726 * 8 7 2 10 10 C 1.47555 * 110.99654 * 76.23828 * 9 8 7 11 11 C 1.54578 * 107.29329 * 123.20096 * 10 9 8 12 12 C 1.53701 * 102.85792 * 20.96974 * 11 10 9 13 13 C 1.53220 * 111.53356 * 205.83097 * 12 11 10 14 14 C 1.54799 * 101.39355 * 261.15911 * 13 12 11 15 15 N 1.46918 * 105.54194 * 335.82555 * 14 13 12 16 16 C 1.46508 * 124.37730 * 196.74591 * 15 14 13 17 17 C 1.53004 * 109.47021 * 270.02847 * 16 15 14 18 18 C 1.50701 * 109.47080 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99580 * 359.97438 * 18 17 16 20 20 C 1.37869 * 119.99792 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00447 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99910 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46779 * 59.99921 * 22 20 18 24 24 H 1.48503 * 109.47173 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46933 * 300.00037 * 22 20 18 26 26 C 1.34890 * 111.24659 * 16.75039 * 15 14 13 27 27 O 1.21280 * 125.21745 * 178.75725 * 26 15 14 28 28 C 1.48124 * 110.99526 * 197.17626 * 9 8 7 29 29 H 1.09002 * 109.47024 * 85.12175 * 1 2 3 30 30 H 1.09000 * 109.46889 * 205.11505 * 1 2 3 31 31 H 1.09003 * 109.47200 * 325.11555 * 1 2 3 32 32 H 1.08001 * 125.65100 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.46645 * 90.02475 * 6 5 4 34 34 H 1.09002 * 109.47159 * 330.02456 * 6 5 4 35 35 H 1.09004 * 109.46799 * 210.02245 * 6 5 4 36 36 H 1.08998 * 109.47503 * 199.50754 * 8 7 2 37 37 H 1.09003 * 109.47112 * 319.51313 * 8 7 2 38 38 H 1.09001 * 109.87464 * 242.61802 * 10 9 8 39 39 H 1.08994 * 109.88084 * 3.77054 * 10 9 8 40 40 H 1.09001 * 110.73958 * 139.31262 * 11 10 9 41 41 H 1.08998 * 110.73359 * 262.63407 * 11 10 9 42 42 H 1.08999 * 111.03686 * 19.19186 * 13 12 11 43 43 H 1.08995 * 111.03736 * 143.12614 * 13 12 11 44 44 H 1.09000 * 110.22898 * 216.80623 * 14 13 12 45 45 H 1.09003 * 110.30452 * 94.88561 * 14 13 12 46 46 H 1.08999 * 109.47050 * 30.02762 * 16 15 14 47 47 H 1.08999 * 109.46908 * 150.03002 * 16 15 14 48 48 H 1.08999 * 109.47139 * 299.99860 * 17 16 15 49 49 H 1.09003 * 109.47363 * 59.99591 * 17 16 15 50 50 H 0.97006 * 120.00210 * 180.02562 * 21 20 18 51 51 H 1.09003 * 110.40293 * 333.88383 * 28 9 8 52 52 H 1.08996 * 110.39858 * 96.29018 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7097 -0.0006 5 7 3.5913 -0.6400 -0.0004 6 6 4.7997 -1.4682 -0.0003 7 6 2.2984 -1.0895 -0.0067 8 6 1.8474 -2.5275 -0.0150 9 7 1.4598 -2.9111 -1.3791 10 6 2.6490 -3.1400 -2.2221 11 6 2.5476 -4.5786 -2.7786 12 6 1.0483 -4.8909 -2.6484 13 6 0.7960 -6.3975 -2.5295 14 6 0.4073 -6.7581 -3.9839 15 7 -0.0969 -5.5122 -4.5771 16 6 -0.8942 -5.4436 -5.8043 17 6 0.0369 -5.3021 -7.0101 18 6 -0.7832 -5.2322 -8.2725 19 1 -1.8607 -5.2840 -8.2200 20 6 -0.1580 -5.1022 -9.4944 21 7 1.1541 -5.0386 -9.5583 22 14 -1.1745 -5.0148 -11.0592 23 1 -2.0831 -3.8419 -10.9944 24 1 -0.2709 -4.8764 -12.2295 25 1 -1.9778 -6.2561 -11.1975 26 6 0.2693 -4.4394 -3.8458 27 8 0.0078 -3.2864 -4.1162 28 6 0.6405 -4.1451 -1.3708 29 1 -0.3633 0.0874 -1.0240 30 1 -0.3633 -0.9305 0.4362 31 1 -0.3634 0.8430 0.5878 32 1 4.4003 1.3690 -0.0003 33 1 5.0992 -1.6738 1.0275 34 1 5.6027 -0.9394 -0.5139 35 1 4.5963 -2.4077 -0.5143 36 1 2.6631 -3.1661 0.3241 37 1 0.9932 -2.6442 0.6519 38 1 2.6635 -2.4247 -3.0444 39 1 3.5535 -3.0373 -1.6228 40 1 2.8594 -4.6114 -3.8226 41 1 3.1391 -5.2679 -2.1762 42 1 1.7010 -6.9229 -2.2245 43 1 -0.0246 -6.6038 -1.8425 44 1 -0.3722 -7.5200 -3.9878 45 1 1.2807 -7.1105 -4.5326 46 1 -1.4841 -6.3546 -5.9056 47 1 -1.5607 -4.5825 -5.7568 48 1 0.6268 -4.3911 -6.9088 49 1 0.7035 -6.1632 -7.0575 50 1 1.5939 -4.9467 -10.4180 51 1 0.8682 -4.7465 -0.4906 52 1 -0.4205 -3.8969 -1.3982 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274351839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:15 Heat of formation + Delta-G solvation = 38.768917 kcal Electronic energy + Delta-G solvation = -31381.788527 eV Core-core repulsion = 27382.341555 eV Total energy + Delta-G solvation = -3999.446972 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.24645 -40.91808 -37.97950 -35.94330 -34.53225 -34.20925 -32.93104 -31.55460 -30.23477 -29.27364 -28.57087 -27.89654 -26.38299 -25.21018 -24.86263 -23.35349 -21.93353 -21.49464 -20.85018 -20.37936 -19.43110 -18.56550 -16.99046 -16.64410 -16.35710 -16.20548 -15.66891 -15.42317 -15.10306 -14.95280 -14.60100 -14.48115 -13.92534 -13.91137 -13.57692 -13.40413 -13.22313 -13.05189 -12.70239 -12.65883 -12.61880 -12.43729 -12.35289 -12.29599 -12.14702 -12.02201 -11.92045 -11.79047 -11.30716 -11.16611 -10.95427 -10.90460 -10.76305 -10.67006 -9.97208 -9.95701 -9.83994 -9.58084 -9.30936 -9.02209 -8.39644 -8.36384 -8.21132 -7.96660 -6.01740 -4.05162 1.87828 2.61767 3.04444 3.08155 3.33487 3.37730 3.39900 3.57100 3.84145 4.27652 4.35447 4.37696 4.40558 4.46326 4.53089 4.62950 4.71137 4.76401 4.81634 4.84820 5.08740 5.12437 5.14471 5.23918 5.28385 5.34474 5.38413 5.43132 5.44976 5.56007 5.68334 5.70123 5.80689 5.86081 5.87040 6.01090 6.02097 6.08287 6.08995 6.14820 6.24355 6.48363 6.73671 6.82222 6.82804 6.91311 7.05405 7.10421 7.53291 7.67922 7.87414 7.98306 8.04937 8.34894 8.76712 9.01558 9.58894 11.09659 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.002495 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.529946 B =11217.682521 C =11909.217122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.027 3.973 3 N -0.493 5.493 4 C 0.181 3.819 5 N -0.461 5.461 6 C 0.067 3.933 7 C -0.019 4.019 8 C 0.130 3.870 9 N -0.509 5.509 10 C 0.049 3.951 11 C -0.118 4.118 12 C -0.107 4.107 13 C -0.120 4.120 14 C 0.104 3.896 15 N -0.616 5.616 16 C 0.130 3.870 17 C 0.013 3.987 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.059 3.941 21 N -0.894 5.894 22 Si 0.895 3.105 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.276 1.276 26 C 0.529 3.471 27 O -0.507 6.507 28 C 0.072 3.928 29 H 0.073 0.927 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.202 0.798 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.039 0.961 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.069 0.931 46 H 0.064 0.936 47 H 0.070 0.930 48 H 0.020 0.980 49 H 0.015 0.985 50 H 0.261 0.739 51 H 0.054 0.946 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.325 -0.894 25.199 26.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 N -0.212 5.212 4 C -0.101 4.101 5 N -0.145 5.145 6 C -0.075 4.075 7 C -0.133 4.133 8 C 0.001 3.999 9 N -0.233 5.233 10 C -0.078 4.078 11 C -0.157 4.157 12 C -0.111 4.111 13 C -0.158 4.158 14 C -0.020 4.020 15 N -0.350 5.350 16 C 0.010 3.990 17 C -0.025 4.025 18 C -0.561 4.561 19 H 0.075 0.925 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.722 3.278 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.202 1.202 26 C 0.314 3.686 27 O -0.381 6.381 28 C -0.055 4.055 29 H 0.092 0.908 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.219 0.781 33 H 0.093 0.907 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.067 0.933 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.106 0.894 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.088 0.912 46 H 0.082 0.918 47 H 0.088 0.912 48 H 0.038 0.962 49 H 0.034 0.966 50 H 0.071 0.929 51 H 0.072 0.928 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 6.832 0.880 24.646 25.590 hybrid contribution 0.689 -1.511 -0.796 1.841 sum 7.521 -0.630 23.849 25.015 Atomic orbital electron populations 1.19985 0.87601 1.01632 1.02743 1.20452 0.96408 0.87621 1.05784 1.70182 1.00464 1.30630 1.19957 1.24824 0.97257 0.81573 1.06439 1.45192 1.06288 1.07731 1.55260 1.22133 0.85753 0.96307 1.03327 1.20702 0.83171 0.96650 1.12783 1.20518 0.99427 0.88741 0.91230 1.63594 1.18079 1.32717 1.08906 1.22975 0.91024 0.96425 0.97402 1.22553 0.93276 0.96804 1.03041 1.21528 0.96990 0.96397 0.96213 1.22483 1.02725 0.93441 0.97123 1.22046 0.99744 0.87788 0.92452 1.48688 1.53529 1.06539 1.26276 1.21775 0.93791 1.01161 0.82313 1.19391 0.94856 0.97554 0.90699 1.21057 0.93110 1.50835 0.91137 0.92537 1.24994 0.94910 0.95102 0.99223 1.69961 1.07956 1.49985 1.25332 0.86618 0.79998 0.78682 0.82479 1.20098 1.21266 1.20192 1.19850 0.79600 0.85230 0.83933 1.90741 1.56073 1.18392 1.72927 1.22706 0.99347 0.88816 0.94665 0.90813 0.91689 0.91922 0.78103 0.90673 0.89301 0.89671 0.94332 0.88810 0.90008 0.93285 0.89859 0.90534 0.89448 0.89917 0.90675 0.91233 0.91769 0.91180 0.96157 0.96620 0.92905 0.92752 0.89528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.75 10.26 36.01 0.37 -0.38 16 2 C 0.03 0.37 7.09 -82.85 -0.59 -0.22 16 3 N -0.49 -7.04 11.25 -10.87 -0.12 -7.16 16 4 C 0.18 1.97 12.56 -90.37 -1.14 0.83 16 5 N -0.46 -4.53 3.15 -121.35 -0.38 -4.91 16 6 C 0.07 0.38 10.78 59.85 0.65 1.02 16 7 C -0.02 -0.23 6.14 -81.60 -0.50 -0.73 16 8 C 0.13 1.27 4.55 -4.97 -0.02 1.25 16 9 N -0.51 -6.21 5.11 -233.13 -1.19 -7.40 16 10 C 0.05 0.60 6.50 -2.64 -0.02 0.58 16 11 C -0.12 -1.36 5.94 -25.54 -0.15 -1.51 16 12 C -0.11 -1.34 0.67 -155.37 -0.10 -1.45 16 13 C -0.12 -1.14 6.26 -25.67 -0.16 -1.30 16 14 C 0.10 1.33 7.37 -2.87 -0.02 1.31 16 15 N -0.62 -11.04 2.95 -172.56 -0.51 -11.55 16 16 C 0.13 2.76 5.88 -4.04 -0.02 2.73 16 17 C 0.01 0.34 5.30 -27.88 -0.15 0.19 16 18 C -0.52 -14.94 9.11 -34.44 -0.31 -15.26 16 19 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 21 N -0.89 -27.21 13.29 55.43 0.74 -26.47 16 22 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.53 9.67 6.73 -11.36 -0.08 9.59 16 27 O -0.51 -11.62 17.51 5.56 0.10 -11.53 16 28 C 0.07 0.80 5.48 -2.91 -0.02 0.78 16 29 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.06 0.67 7.29 -51.93 -0.38 0.29 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.20 1.39 8.06 -52.49 -0.42 0.97 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.08 0.48 4.79 -51.93 -0.25 0.23 16 36 H 0.04 0.31 7.03 -51.93 -0.36 -0.06 16 37 H 0.09 0.82 7.33 -51.93 -0.38 0.43 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.05 0.47 4.53 -51.93 -0.24 0.24 16 40 H 0.08 1.15 8.00 -51.93 -0.42 0.73 16 41 H 0.08 0.65 7.74 -51.93 -0.40 0.25 16 42 H 0.09 0.63 7.62 -51.93 -0.40 0.23 16 43 H 0.08 0.66 7.97 -51.93 -0.41 0.25 16 44 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 47 H 0.07 1.58 7.96 -51.93 -0.41 1.17 16 48 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.05 0.44 7.70 -51.93 -0.40 0.04 16 52 H 0.09 1.07 8.01 -51.93 -0.42 0.65 16 LS Contribution 411.71 15.07 6.20 6.20 Total: -1.00 -37.50 411.71 -11.21 -48.70 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -8.66 Total: -1.82 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: -2.36 Total: -0.93 kcal Atomic # 7 Polarization: -56.03 SS G_CDS: -1.47 Total: -57.50 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.10 Total: -11.53 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -37.50 -11.21 -48.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274351839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.471 kcal (2) G-P(sol) polarization free energy of solvation -37.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.702 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds