Wall clock time and date at job start Wed Apr 1 2020 04:53:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34128 * 125.98373 * 2 1 4 4 C 1.30506 * 109.25523 * 180.02562 * 3 2 1 5 5 N 1.35045 * 108.69603 * 359.97438 * 4 3 2 6 6 C 1.46508 * 126.39414 * 180.02562 * 5 4 3 7 7 C 1.34664 * 125.99452 * 180.35295 * 2 1 3 8 8 C 1.50703 * 126.59269 * 359.97438 * 7 2 1 9 9 N 1.46907 * 109.46648 * 79.50726 * 8 7 2 10 10 C 1.47555 * 110.99654 * 76.23828 * 9 8 7 11 11 C 1.54578 * 107.29329 * 123.20096 * 10 9 8 12 12 C 1.53701 * 102.85792 * 20.96974 * 11 10 9 13 13 C 1.53220 * 111.53356 * 205.83097 * 12 11 10 14 14 C 1.54799 * 101.39355 * 261.15911 * 13 12 11 15 15 N 1.46918 * 105.54194 * 335.82555 * 14 13 12 16 16 C 1.46508 * 124.37730 * 196.74591 * 15 14 13 17 17 C 1.53004 * 109.47021 * 270.02847 * 16 15 14 18 18 C 1.50701 * 109.47080 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99580 * 359.97438 * 18 17 16 20 20 C 1.37869 * 119.99792 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00447 * 359.97438 * 20 18 17 22 22 Si 1.86807 * 119.99910 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.46779 * 59.99921 * 22 20 18 24 24 H 1.48503 * 109.47173 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46933 * 300.00037 * 22 20 18 26 26 C 1.34890 * 111.24659 * 16.75039 * 15 14 13 27 27 O 1.21280 * 125.21745 * 178.75725 * 26 15 14 28 28 C 1.48124 * 110.99526 * 197.17626 * 9 8 7 29 29 H 1.09002 * 109.47024 * 85.12175 * 1 2 3 30 30 H 1.09000 * 109.46889 * 205.11505 * 1 2 3 31 31 H 1.09003 * 109.47200 * 325.11555 * 1 2 3 32 32 H 1.08001 * 125.65100 * 180.02562 * 4 3 2 33 33 H 1.09004 * 109.46645 * 90.02475 * 6 5 4 34 34 H 1.09002 * 109.47159 * 330.02456 * 6 5 4 35 35 H 1.09004 * 109.46799 * 210.02245 * 6 5 4 36 36 H 1.08998 * 109.47503 * 199.50754 * 8 7 2 37 37 H 1.09003 * 109.47112 * 319.51313 * 8 7 2 38 38 H 1.09001 * 109.87464 * 242.61802 * 10 9 8 39 39 H 1.08994 * 109.88084 * 3.77054 * 10 9 8 40 40 H 1.09001 * 110.73958 * 139.31262 * 11 10 9 41 41 H 1.08998 * 110.73359 * 262.63407 * 11 10 9 42 42 H 1.08999 * 111.03686 * 19.19186 * 13 12 11 43 43 H 1.08995 * 111.03736 * 143.12614 * 13 12 11 44 44 H 1.09000 * 110.22898 * 216.80623 * 14 13 12 45 45 H 1.09003 * 110.30452 * 94.88561 * 14 13 12 46 46 H 1.08999 * 109.47050 * 30.02762 * 16 15 14 47 47 H 1.08999 * 109.46908 * 150.03002 * 16 15 14 48 48 H 1.08999 * 109.47139 * 299.99860 * 17 16 15 49 49 H 1.09003 * 109.47363 * 59.99591 * 17 16 15 50 50 H 0.97006 * 120.00210 * 180.02562 * 21 20 18 51 51 H 1.09003 * 110.40293 * 333.88383 * 28 9 8 52 52 H 1.08996 * 110.39858 * 96.29018 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7097 -0.0006 5 7 3.5913 -0.6400 -0.0004 6 6 4.7997 -1.4682 -0.0003 7 6 2.2984 -1.0895 -0.0067 8 6 1.8474 -2.5275 -0.0150 9 7 1.4598 -2.9111 -1.3791 10 6 2.6490 -3.1400 -2.2221 11 6 2.5476 -4.5786 -2.7786 12 6 1.0483 -4.8909 -2.6484 13 6 0.7960 -6.3975 -2.5295 14 6 0.4073 -6.7581 -3.9839 15 7 -0.0969 -5.5122 -4.5771 16 6 -0.8942 -5.4436 -5.8043 17 6 0.0369 -5.3021 -7.0101 18 6 -0.7832 -5.2322 -8.2725 19 1 -1.8607 -5.2840 -8.2200 20 6 -0.1580 -5.1022 -9.4944 21 7 1.1541 -5.0386 -9.5583 22 14 -1.1745 -5.0148 -11.0592 23 1 -2.0831 -3.8419 -10.9944 24 1 -0.2709 -4.8764 -12.2295 25 1 -1.9778 -6.2561 -11.1975 26 6 0.2693 -4.4394 -3.8458 27 8 0.0078 -3.2864 -4.1162 28 6 0.6405 -4.1451 -1.3708 29 1 -0.3633 0.0874 -1.0240 30 1 -0.3633 -0.9305 0.4362 31 1 -0.3634 0.8430 0.5878 32 1 4.4003 1.3690 -0.0003 33 1 5.0992 -1.6738 1.0275 34 1 5.6027 -0.9394 -0.5139 35 1 4.5963 -2.4077 -0.5143 36 1 2.6631 -3.1661 0.3241 37 1 0.9932 -2.6442 0.6519 38 1 2.6635 -2.4247 -3.0444 39 1 3.5535 -3.0373 -1.6228 40 1 2.8594 -4.6114 -3.8226 41 1 3.1391 -5.2679 -2.1762 42 1 1.7010 -6.9229 -2.2245 43 1 -0.0246 -6.6038 -1.8425 44 1 -0.3722 -7.5200 -3.9878 45 1 1.2807 -7.1105 -4.5326 46 1 -1.4841 -6.3546 -5.9056 47 1 -1.5607 -4.5825 -5.7568 48 1 0.6268 -4.3911 -6.9088 49 1 0.7035 -6.1632 -7.0575 50 1 1.5939 -4.9467 -10.4180 51 1 0.8682 -4.7465 -0.4906 52 1 -0.4205 -3.8969 -1.3982 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274351839.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:14 Heat of formation + Delta-G solvation = 13.082020 kcal Electronic energy + Delta-G solvation = -31382.902394 eV Core-core repulsion = 27382.341555 eV Total energy + Delta-G solvation = -4000.560839 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.05997 -42.06331 -39.09571 -37.40825 -35.89256 -35.23767 -34.51725 -32.87093 -31.35490 -30.60349 -29.49882 -28.85535 -27.22867 -26.91805 -25.81901 -24.47356 -23.56775 -22.40118 -21.78038 -21.62939 -20.31383 -19.84646 -18.69162 -17.72522 -17.45252 -17.09194 -17.03175 -16.75531 -16.41588 -16.08477 -15.81147 -15.50218 -15.15534 -14.84639 -14.64318 -14.48742 -14.35402 -14.24478 -14.09941 -13.89417 -13.66372 -13.51778 -13.34688 -13.19265 -13.16190 -13.08927 -12.94575 -12.86189 -12.84405 -12.67790 -12.56601 -12.16579 -11.97754 -11.90428 -11.81573 -11.53537 -11.44148 -10.84822 -10.63341 -10.51028 -10.38031 -9.51196 -9.21119 -9.07568 -8.26344 -6.39564 1.06498 1.36429 1.41207 1.48529 1.66018 1.96068 2.17507 2.18418 2.40233 3.00150 3.06939 3.31623 3.48437 3.51294 3.75203 3.77033 3.87138 3.92091 4.06895 4.09341 4.19047 4.30130 4.36408 4.37704 4.41691 4.50210 4.52826 4.52982 4.57965 4.62595 4.69623 4.75518 4.79972 4.84211 4.85389 4.89434 4.95379 5.03895 5.10206 5.12353 5.16275 5.23356 5.31805 5.42642 5.44567 5.60182 5.81996 5.87568 5.98746 6.12593 6.14170 6.36391 6.38311 6.75805 7.19718 7.29785 7.34079 8.85660 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.013903 B = 0.002495 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.529946 B =11217.682521 C =11909.217122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C -0.015 4.015 3 N -0.541 5.541 4 C 0.178 3.822 5 N -0.458 5.458 6 C 0.061 3.939 7 C -0.020 4.020 8 C 0.134 3.866 9 N -0.540 5.540 10 C 0.055 3.945 11 C -0.112 4.112 12 C -0.102 4.102 13 C -0.099 4.099 14 C 0.091 3.909 15 N -0.626 5.626 16 C 0.144 3.856 17 C 0.027 3.973 18 C -0.547 4.547 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.970 3.030 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.257 1.257 26 C 0.511 3.489 27 O -0.572 6.572 28 C 0.079 3.921 29 H 0.046 0.954 30 H 0.081 0.919 31 H 0.063 0.937 32 H 0.235 0.765 33 H 0.099 0.901 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.106 0.894 38 H 0.026 0.974 39 H 0.080 0.920 40 H 0.048 0.952 41 H 0.127 0.873 42 H 0.128 0.872 43 H 0.110 0.890 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.047 0.953 48 H -0.033 1.033 49 H 0.000 1.000 50 H 0.265 0.735 51 H 0.103 0.897 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.190 -3.942 27.618 29.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.144 4.144 3 N -0.261 5.261 4 C -0.104 4.104 5 N -0.141 5.141 6 C -0.080 4.080 7 C -0.135 4.135 8 C 0.006 3.994 9 N -0.265 5.265 10 C -0.072 4.072 11 C -0.151 4.151 12 C -0.106 4.106 13 C -0.136 4.136 14 C -0.031 4.031 15 N -0.358 5.358 16 C 0.022 3.978 17 C -0.011 4.011 18 C -0.586 4.586 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.573 5.573 22 Si 0.794 3.206 23 H -0.197 1.197 24 H -0.207 1.207 25 H -0.182 1.182 26 C 0.299 3.701 27 O -0.450 6.450 28 C -0.048 4.048 29 H 0.065 0.935 30 H 0.100 0.900 31 H 0.081 0.919 32 H 0.251 0.749 33 H 0.117 0.883 34 H 0.124 0.876 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.125 0.875 38 H 0.045 0.955 39 H 0.098 0.902 40 H 0.067 0.933 41 H 0.145 0.855 42 H 0.146 0.854 43 H 0.129 0.871 44 H 0.116 0.884 45 H 0.082 0.918 46 H 0.109 0.891 47 H 0.066 0.934 48 H -0.014 1.014 49 H 0.018 0.982 50 H 0.073 0.927 51 H 0.121 0.879 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.716 -2.232 27.100 28.265 hybrid contribution 0.489 -0.502 -1.588 1.736 sum 8.205 -2.734 25.512 26.938 Atomic orbital electron populations 1.19909 0.87703 1.02571 1.01146 1.20770 0.97044 0.88645 1.07969 1.70104 1.02209 1.31934 1.21871 1.25462 0.97219 0.82649 1.05071 1.45441 1.06940 1.07787 1.53955 1.22453 0.84415 0.95929 1.05214 1.21016 0.83748 0.97234 1.11503 1.20594 1.01002 0.87782 0.90006 1.63355 1.18473 1.34132 1.10491 1.22791 0.92519 0.95513 0.96425 1.22604 0.93116 0.97485 1.01898 1.21526 0.96434 0.98808 0.93842 1.22591 1.05587 0.90552 0.94896 1.22441 1.00188 0.85930 0.94512 1.48838 1.52970 1.08975 1.25057 1.21303 0.92877 1.01375 0.82288 1.19179 0.94788 0.94100 0.93055 1.21535 0.93867 1.50920 0.92238 0.91567 1.26033 0.96154 0.94329 1.03268 1.70109 1.09962 1.50756 1.26439 0.85427 0.78303 0.79404 0.77484 1.19655 1.20703 1.18157 1.21060 0.79105 0.84351 0.85583 1.90692 1.58418 1.21055 1.74867 1.22711 0.98138 0.88663 0.95304 0.93490 0.89988 0.91851 0.74903 0.88268 0.87579 0.89356 0.91208 0.87545 0.95518 0.90224 0.93291 0.85498 0.85397 0.87137 0.88373 0.91757 0.89121 0.93443 1.01413 0.98184 0.92676 0.87870 0.91447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.44 10.26 71.24 0.73 -0.70 16 2 C -0.02 -0.43 7.09 41.39 0.29 -0.14 16 3 N -0.54 -15.96 11.25 -188.31 -2.12 -18.08 16 4 C 0.18 3.76 12.56 180.26 2.26 6.03 16 5 N -0.46 -8.25 3.15 -537.85 -1.70 -9.94 16 6 C 0.06 0.48 10.78 127.77 1.38 1.86 16 7 C -0.02 -0.44 6.14 40.95 0.25 -0.19 16 8 C 0.13 2.26 4.55 85.56 0.39 2.65 16 9 N -0.54 -12.56 5.11 -891.47 -4.55 -17.12 16 10 C 0.05 1.30 6.50 86.71 0.56 1.87 16 11 C -0.11 -2.39 5.94 31.37 0.19 -2.20 16 12 C -0.10 -2.37 0.67 -52.74 -0.04 -2.40 16 13 C -0.10 -1.42 6.26 31.28 0.20 -1.23 16 14 C 0.09 2.14 7.37 86.91 0.64 2.78 16 15 N -0.63 -22.88 2.95 -818.18 -2.41 -25.30 16 16 C 0.14 6.37 5.88 86.38 0.51 6.88 16 17 C 0.03 1.50 5.30 29.85 0.16 1.66 16 18 C -0.55 -32.32 9.11 25.60 0.23 -32.09 16 19 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 20 C 0.00 0.02 5.46 84.65 0.46 0.48 16 21 N -0.93 -58.76 13.29 21.44 0.28 -58.48 16 22 Si 0.97 45.42 29.54 68.60 2.03 47.45 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 26 C 0.51 19.45 6.73 87.36 0.59 20.03 16 27 O -0.57 -28.49 17.51 -3.03 -0.05 -28.54 16 28 C 0.08 1.53 5.48 86.22 0.47 2.01 16 29 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.08 1.73 7.29 -2.39 -0.02 1.71 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.23 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.09 0.65 4.79 -2.38 -0.01 0.64 16 36 H 0.07 0.76 7.03 -2.39 -0.02 0.74 16 37 H 0.11 1.52 7.33 -2.39 -0.02 1.50 16 38 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.08 1.32 4.53 -2.39 -0.01 1.31 16 40 H 0.05 1.38 8.00 -2.39 -0.02 1.36 16 41 H 0.13 1.46 7.74 -2.39 -0.02 1.44 16 42 H 0.13 0.93 7.62 -2.39 -0.02 0.92 16 43 H 0.11 1.08 7.97 -2.39 -0.02 1.06 16 44 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.06 1.58 8.14 -2.39 -0.02 1.57 16 46 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 47 H 0.05 2.29 7.96 -2.39 -0.02 2.27 16 48 H -0.03 -2.14 8.14 -2.39 -0.02 -2.16 16 49 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 50 H 0.26 15.61 8.31 -92.70 -0.77 14.84 16 51 H 0.10 1.05 7.70 -2.39 -0.02 1.03 16 52 H 0.07 1.58 8.01 -2.39 -0.02 1.57 16 Total: -1.00 -92.55 411.71 1.66 -90.89 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.90 Total: 11.83 kcal Atomic # 6 Polarization: -1.99 SS G_CDS: 9.28 Total: 7.29 kcal Atomic # 7 Polarization: -118.42 SS G_CDS: -10.50 Total: -128.91 kcal Atomic # 8 Polarization: -28.49 SS G_CDS: -0.05 Total: -28.54 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -92.55 1.66 -90.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274351839.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.968 kcal (2) G-P(sol) polarization free energy of solvation -92.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds