Wall clock time and date at job start Wed Apr 1 2020 04:53:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34128 * 125.99357 * 2 1 4 4 C 1.30502 * 109.25644 * 179.72165 * 3 2 1 5 5 N 1.35035 * 108.69990 * 0.44323 * 4 3 2 6 6 C 1.46506 * 126.39739 * 179.82751 * 5 4 3 7 7 C 1.34673 * 125.99097 * 179.97438 * 2 1 3 8 8 C 1.50705 * 126.58696 * 359.97167 * 7 2 1 9 9 N 1.46901 * 109.46654 * 270.03948 * 8 7 2 10 10 C 1.47660 * 111.00117 * 69.88016 * 9 8 7 11 11 C 1.54521 * 107.05540 * 123.12404 * 10 9 8 12 12 C 1.54883 * 102.59620 * 22.99174 * 11 10 9 13 13 H 1.08994 * 110.41639 * 80.16395 * 12 11 10 14 14 C 1.48277 * 110.99527 * 190.44467 * 9 8 7 15 15 H 1.08996 * 111.35779 * 92.74836 * 14 9 8 16 16 C 1.54917 * 108.80667 * 328.65049 * 14 9 8 17 17 C 1.52889 * 109.57471 * 182.99953 * 16 14 9 18 18 C 1.50347 * 109.30746 * 52.99823 * 17 16 14 19 19 O 1.21278 * 118.79775 * 158.32139 * 18 17 16 20 20 N 1.33347 * 122.39804 * 338.33923 * 18 17 16 21 21 C 1.46497 * 117.28594 * 179.80518 * 20 18 17 22 22 C 1.52999 * 109.46985 * 269.97976 * 21 20 18 23 23 C 1.50701 * 109.47381 * 180.02562 * 22 21 20 24 24 H 1.08003 * 120.00104 * 0.02562 * 23 22 21 25 25 C 1.37873 * 120.00200 * 179.97438 * 23 22 21 26 26 N 1.31513 * 120.00276 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00207 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46812 * 90.00055 * 27 25 23 29 29 H 1.48498 * 109.47232 * 210.00345 * 27 25 23 30 30 H 1.48500 * 109.47121 * 330.00391 * 27 25 23 31 31 H 1.09001 * 109.47428 * 270.00465 * 1 2 3 32 32 H 1.09011 * 109.46785 * 30.00375 * 1 2 3 33 33 H 1.08998 * 109.46898 * 149.99955 * 1 2 3 34 34 H 1.08000 * 125.64834 * 180.29623 * 4 3 2 35 35 H 1.08999 * 109.46892 * 269.69015 * 6 5 4 36 36 H 1.09000 * 109.46803 * 29.68188 * 6 5 4 37 37 H 1.09000 * 109.47214 * 149.68982 * 6 5 4 38 38 H 1.08993 * 109.47330 * 30.03593 * 8 7 2 39 39 H 1.09003 * 109.46907 * 150.04077 * 8 7 2 40 40 H 1.09006 * 109.91162 * 242.46703 * 10 9 8 41 41 H 1.08997 * 109.91969 * 3.56807 * 10 9 8 42 42 H 1.09000 * 110.78822 * 141.27116 * 11 10 9 43 43 H 1.09007 * 110.77960 * 264.52534 * 11 10 9 44 44 H 1.09001 * 109.25363 * 63.03748 * 16 14 9 45 45 H 1.08996 * 109.51226 * 303.11456 * 16 14 9 46 46 H 1.09000 * 109.49765 * 293.04671 * 17 16 14 47 47 H 1.09002 * 109.49473 * 172.94861 * 17 16 14 48 48 H 1.09001 * 109.47482 * 29.97878 * 21 20 18 49 49 H 1.09003 * 109.47553 * 149.97760 * 21 20 18 50 50 H 1.09001 * 109.46923 * 299.99683 * 22 21 20 51 51 H 1.08995 * 109.47285 * 59.99834 * 22 21 20 52 52 H 0.96996 * 120.00609 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7094 0.0060 5 7 3.5912 -0.6402 0.0001 6 6 4.7996 -1.4686 0.0002 7 6 2.2984 -1.0897 0.0005 8 6 1.8471 -2.5276 0.0017 9 7 1.7002 -2.9934 1.3872 10 6 0.5461 -2.3469 2.0432 11 6 -0.3863 -3.4763 2.5359 12 6 0.5767 -4.6841 2.6490 13 1 1.1466 -4.6304 3.5765 14 6 1.5023 -4.4621 1.4357 15 1 2.4499 -4.9864 1.5589 16 6 0.7508 -4.9073 0.1563 17 6 0.4713 -6.4089 0.2228 18 6 -0.2261 -6.7280 1.5160 19 8 -0.8755 -7.7493 1.5931 20 7 -0.1568 -5.9287 2.5812 21 6 -0.8836 -6.3464 3.7826 22 6 -2.3039 -5.7790 3.7425 23 6 -3.0515 -6.2081 4.9786 24 1 -2.5623 -6.8236 5.7191 25 6 -4.3595 -5.8141 5.1648 26 7 -4.9548 -5.0634 4.2640 27 14 -5.2864 -6.3466 6.6968 28 1 -5.0908 -5.3381 7.7692 29 1 -6.7335 -6.4629 6.3845 30 1 -4.7715 -7.6621 7.1547 31 1 -0.3634 0.0001 1.0276 32 1 -0.3633 0.8901 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 4.4004 1.3686 0.0120 35 1 5.0993 -1.6740 -1.0274 36 1 5.6025 -0.9398 0.5140 37 1 4.5960 -2.4080 0.5141 38 1 0.8894 -2.6083 -0.5122 39 1 2.5877 -3.1412 -0.5113 40 1 0.8864 -1.7506 2.8899 41 1 0.0207 -1.7123 1.3295 42 1 -0.8128 -3.2293 3.5081 43 1 -1.1739 -3.6726 1.8083 44 1 1.3669 -4.6902 -0.7163 45 1 -0.1916 -4.3649 0.0803 46 1 1.4122 -6.9568 0.1720 47 1 -0.1643 -6.6981 -0.6142 48 1 -0.9281 -7.4349 3.8204 49 1 -0.3680 -5.9730 4.6674 50 1 -2.2594 -4.6906 3.7048 51 1 -2.8195 -6.1524 2.8577 52 1 -5.8751 -4.7865 4.3947 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001274352452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:24 Heat of formation + Delta-G solvation = 39.585415 kcal Electronic energy + Delta-G solvation = -32063.791825 eV Core-core repulsion = 28064.380259 eV Total energy + Delta-G solvation = -3999.411565 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36593 -40.87726 -38.53251 -35.45487 -34.58183 -33.87198 -32.83088 -32.33088 -30.63135 -29.37771 -28.40368 -27.93752 -26.43091 -25.21595 -24.82341 -23.56913 -21.96239 -21.40486 -20.67860 -20.62313 -19.36298 -17.99486 -17.00743 -16.76558 -16.44094 -16.34766 -15.98689 -15.49054 -15.26795 -14.85755 -14.51712 -14.45688 -14.40996 -13.80144 -13.64459 -13.36807 -13.26816 -13.21918 -12.77074 -12.72725 -12.58774 -12.48183 -12.38834 -12.26389 -12.20617 -11.83828 -11.64340 -11.57258 -11.23101 -11.17333 -10.92699 -10.84480 -10.68648 -10.49006 -10.03449 -9.81747 -9.80777 -9.65793 -9.33814 -9.00844 -8.61145 -8.33166 -8.29083 -8.06043 -5.99519 -4.01783 1.78806 2.58775 2.94523 3.05330 3.32803 3.37141 3.40074 3.44396 3.88070 4.32402 4.37289 4.41748 4.44966 4.47728 4.60738 4.70851 4.74766 4.78988 4.89452 5.01993 5.05265 5.10301 5.13853 5.23540 5.28864 5.31284 5.32837 5.37333 5.41369 5.63535 5.66768 5.67423 5.76518 5.80832 5.83567 5.97123 6.01957 6.16719 6.17625 6.27877 6.35028 6.57159 6.59767 6.71216 6.75486 6.87208 6.93267 7.02278 7.66090 7.75605 7.93967 8.01272 8.05720 8.38819 8.65805 9.04607 9.61730 11.11852 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.002882 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.269478 B = 9712.669577 C =10943.523302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.008 3.992 3 N -0.492 5.492 4 C 0.179 3.821 5 N -0.451 5.451 6 C 0.073 3.927 7 C -0.012 4.012 8 C 0.124 3.876 9 N -0.517 5.517 10 C 0.031 3.969 11 C -0.152 4.152 12 C 0.145 3.855 13 H 0.092 0.908 14 C 0.067 3.933 15 H 0.102 0.898 16 C -0.148 4.148 17 C -0.131 4.131 18 C 0.510 3.490 19 O -0.546 6.546 20 N -0.589 5.589 21 C 0.108 3.892 22 C 0.015 3.985 23 C -0.519 4.519 24 H 0.055 0.945 25 C 0.059 3.941 26 N -0.893 5.893 27 Si 0.892 3.108 28 H -0.281 1.281 29 H -0.287 1.287 30 H -0.274 1.274 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.066 0.934 34 H 0.203 0.797 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.091 0.909 38 H 0.066 0.934 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.077 0.923 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.094 0.906 47 H 0.098 0.902 48 H 0.075 0.925 49 H 0.061 0.939 50 H 0.022 0.978 51 H 0.019 0.981 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.548 8.781 -11.816 26.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.122 4.122 3 N -0.210 5.210 4 C -0.103 4.103 5 N -0.134 5.134 6 C -0.070 4.070 7 C -0.127 4.127 8 C -0.004 4.004 9 N -0.240 5.240 10 C -0.096 4.096 11 C -0.191 4.191 12 C 0.039 3.961 13 H 0.110 0.890 14 C -0.041 4.041 15 H 0.120 0.880 16 C -0.187 4.187 17 C -0.172 4.172 18 C 0.297 3.703 19 O -0.424 6.424 20 N -0.319 5.319 21 C -0.013 4.013 22 C -0.023 4.023 23 C -0.558 4.558 24 H 0.073 0.927 25 C -0.142 4.142 26 N -0.532 5.532 27 Si 0.720 3.280 28 H -0.207 1.207 29 H -0.212 1.212 30 H -0.199 1.199 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.219 0.781 35 H 0.091 0.909 36 H 0.104 0.896 37 H 0.109 0.891 38 H 0.084 0.916 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.112 0.888 47 H 0.116 0.884 48 H 0.093 0.907 49 H 0.079 0.921 50 H 0.040 0.960 51 H 0.037 0.963 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 21.389 9.192 -11.578 26.001 hybrid contribution -0.819 -1.051 0.439 1.403 sum 20.570 8.141 -11.139 24.769 Atomic orbital electron populations 1.20200 0.87934 1.02483 1.02505 1.20460 0.96215 0.87990 1.07488 1.70170 1.00484 1.30488 1.19895 1.24834 0.97186 0.81741 1.06518 1.45157 1.06442 1.07585 1.54252 1.22032 0.85265 0.96507 1.03201 1.20762 0.83524 0.96348 1.12060 1.20554 1.00596 0.88672 0.90623 1.63920 1.41560 1.03682 1.14860 1.23213 0.89862 0.96908 0.99658 1.23336 0.97919 0.94062 1.03770 1.21514 0.92143 0.84092 0.98358 0.88991 1.23200 0.98214 0.88523 0.94209 0.87971 1.22564 1.01551 0.96113 0.98483 1.21572 1.02172 0.96710 0.96707 1.19961 0.81540 0.83609 0.85145 1.90740 1.41970 1.26274 1.83411 1.47084 1.49346 1.20981 1.14520 1.21957 0.94966 1.00809 0.83564 1.19405 0.89003 0.96372 0.97537 1.21104 0.97306 1.32059 1.05339 0.92672 1.24974 0.97577 0.95137 0.96528 1.69960 1.12617 1.36193 1.34468 0.86590 0.79096 0.79054 0.83244 1.20680 1.21233 1.19850 0.90739 0.91136 0.91472 0.78071 0.90856 0.89576 0.89062 0.91591 0.90186 0.90387 0.90842 0.89247 0.90455 0.90629 0.90654 0.88788 0.88380 0.90665 0.92064 0.96023 0.96263 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.77 8.45 36.00 0.30 -0.47 16 2 C 0.01 0.10 6.84 -82.85 -0.57 -0.47 16 3 N -0.49 -6.22 11.25 -10.88 -0.12 -6.34 16 4 C 0.18 1.69 12.56 -90.38 -1.14 0.56 16 5 N -0.45 -3.87 3.15 -121.36 -0.38 -4.25 16 6 C 0.07 0.34 10.87 59.85 0.65 0.99 16 7 C -0.01 -0.12 6.07 -81.60 -0.50 -0.62 16 8 C 0.12 1.09 3.34 -4.97 -0.02 1.07 16 9 N -0.52 -5.13 5.15 -223.39 -1.15 -6.28 16 10 C 0.03 0.36 6.31 -2.61 -0.02 0.34 16 11 C -0.15 -2.14 4.70 -24.94 -0.12 -2.26 16 12 C 0.14 1.96 3.14 -67.30 -0.21 1.75 16 13 H 0.09 1.21 8.01 -51.93 -0.42 0.80 16 14 C 0.07 0.68 3.56 -65.30 -0.23 0.45 16 15 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.15 -1.47 3.94 -25.78 -0.10 -1.57 16 17 C -0.13 -1.57 6.09 -28.11 -0.17 -1.74 16 18 C 0.51 9.03 7.47 -11.79 -0.09 8.94 16 19 O -0.55 -12.36 16.20 5.56 0.09 -12.27 16 20 N -0.59 -10.12 2.51 -166.16 -0.42 -10.54 16 21 C 0.11 2.27 5.06 -4.04 -0.02 2.25 16 22 C 0.01 0.38 5.07 -27.88 -0.14 0.24 16 23 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 24 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 25 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 26 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 27 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 30 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 31 H 0.07 0.78 7.02 -51.93 -0.36 0.42 16 32 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 33 H 0.07 0.62 6.90 -51.93 -0.36 0.26 16 34 H 0.20 1.12 8.06 -52.49 -0.42 0.70 16 35 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 37 H 0.09 0.44 7.80 -51.93 -0.41 0.04 16 38 H 0.07 0.59 5.84 -51.93 -0.30 0.29 16 39 H 0.08 0.58 7.08 -51.93 -0.37 0.21 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.82 3.34 -51.93 -0.17 0.64 16 42 H 0.09 1.43 7.37 -51.93 -0.38 1.05 16 43 H 0.08 1.24 7.36 -51.92 -0.38 0.85 16 44 H 0.08 0.56 6.49 -51.93 -0.34 0.23 16 45 H 0.07 0.86 6.58 -51.93 -0.34 0.52 16 46 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 47 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.07 1.72 7.14 -51.93 -0.37 1.35 16 49 H 0.06 1.19 7.90 -51.93 -0.41 0.78 16 50 H 0.02 0.56 6.11 -51.93 -0.32 0.25 16 51 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 394.63 15.07 5.95 5.95 Total: -1.00 -35.89 394.63 -11.37 -47.25 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.28 Total: -0.20 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: -2.77 Total: -3.99 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -1.33 Total: -53.59 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.27 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.89 -11.37 -47.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274352452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.840 kcal (2) G-P(sol) polarization free energy of solvation -35.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds