Wall clock time and date at job start Wed Apr 1 2020 04:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34128 * 125.99357 * 2 1 4 4 C 1.30502 * 109.25644 * 179.72165 * 3 2 1 5 5 N 1.35035 * 108.69990 * 0.44323 * 4 3 2 6 6 C 1.46506 * 126.39739 * 179.82751 * 5 4 3 7 7 C 1.34673 * 125.99097 * 179.97438 * 2 1 3 8 8 C 1.50705 * 126.58696 * 359.97167 * 7 2 1 9 9 N 1.46901 * 109.46654 * 270.03948 * 8 7 2 10 10 C 1.47660 * 111.00117 * 69.88016 * 9 8 7 11 11 C 1.54521 * 107.05540 * 123.12404 * 10 9 8 12 12 C 1.54883 * 102.59620 * 22.99174 * 11 10 9 13 13 H 1.08994 * 110.41639 * 80.16395 * 12 11 10 14 14 C 1.48277 * 110.99527 * 190.44467 * 9 8 7 15 15 H 1.08996 * 111.35779 * 92.74836 * 14 9 8 16 16 C 1.54917 * 108.80667 * 328.65049 * 14 9 8 17 17 C 1.52889 * 109.57471 * 182.99953 * 16 14 9 18 18 C 1.50347 * 109.30746 * 52.99823 * 17 16 14 19 19 O 1.21278 * 118.79775 * 158.32139 * 18 17 16 20 20 N 1.33347 * 122.39804 * 338.33923 * 18 17 16 21 21 C 1.46497 * 117.28594 * 179.80518 * 20 18 17 22 22 C 1.52999 * 109.46985 * 269.97976 * 21 20 18 23 23 C 1.50701 * 109.47381 * 180.02562 * 22 21 20 24 24 H 1.08003 * 120.00104 * 0.02562 * 23 22 21 25 25 C 1.37873 * 120.00200 * 179.97438 * 23 22 21 26 26 N 1.31513 * 120.00276 * 359.97438 * 25 23 22 27 27 Si 1.86805 * 120.00207 * 179.97438 * 25 23 22 28 28 H 1.48503 * 109.46812 * 90.00055 * 27 25 23 29 29 H 1.48498 * 109.47232 * 210.00345 * 27 25 23 30 30 H 1.48500 * 109.47121 * 330.00391 * 27 25 23 31 31 H 1.09001 * 109.47428 * 270.00465 * 1 2 3 32 32 H 1.09011 * 109.46785 * 30.00375 * 1 2 3 33 33 H 1.08998 * 109.46898 * 149.99955 * 1 2 3 34 34 H 1.08000 * 125.64834 * 180.29623 * 4 3 2 35 35 H 1.08999 * 109.46892 * 269.69015 * 6 5 4 36 36 H 1.09000 * 109.46803 * 29.68188 * 6 5 4 37 37 H 1.09000 * 109.47214 * 149.68982 * 6 5 4 38 38 H 1.08993 * 109.47330 * 30.03593 * 8 7 2 39 39 H 1.09003 * 109.46907 * 150.04077 * 8 7 2 40 40 H 1.09006 * 109.91162 * 242.46703 * 10 9 8 41 41 H 1.08997 * 109.91969 * 3.56807 * 10 9 8 42 42 H 1.09000 * 110.78822 * 141.27116 * 11 10 9 43 43 H 1.09007 * 110.77960 * 264.52534 * 11 10 9 44 44 H 1.09001 * 109.25363 * 63.03748 * 16 14 9 45 45 H 1.08996 * 109.51226 * 303.11456 * 16 14 9 46 46 H 1.09000 * 109.49765 * 293.04671 * 17 16 14 47 47 H 1.09002 * 109.49473 * 172.94861 * 17 16 14 48 48 H 1.09001 * 109.47482 * 29.97878 * 21 20 18 49 49 H 1.09003 * 109.47553 * 149.97760 * 21 20 18 50 50 H 1.09001 * 109.46923 * 299.99683 * 22 21 20 51 51 H 1.08995 * 109.47285 * 59.99834 * 22 21 20 52 52 H 0.96996 * 120.00609 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0852 0.0000 4 6 3.5449 0.7094 0.0060 5 7 3.5912 -0.6402 0.0001 6 6 4.7996 -1.4686 0.0002 7 6 2.2984 -1.0897 0.0005 8 6 1.8471 -2.5276 0.0017 9 7 1.7002 -2.9934 1.3872 10 6 0.5461 -2.3469 2.0432 11 6 -0.3863 -3.4763 2.5359 12 6 0.5767 -4.6841 2.6490 13 1 1.1466 -4.6304 3.5765 14 6 1.5023 -4.4621 1.4357 15 1 2.4499 -4.9864 1.5589 16 6 0.7508 -4.9073 0.1563 17 6 0.4713 -6.4089 0.2228 18 6 -0.2261 -6.7280 1.5160 19 8 -0.8755 -7.7493 1.5931 20 7 -0.1568 -5.9287 2.5812 21 6 -0.8836 -6.3464 3.7826 22 6 -2.3039 -5.7790 3.7425 23 6 -3.0515 -6.2081 4.9786 24 1 -2.5623 -6.8236 5.7191 25 6 -4.3595 -5.8141 5.1648 26 7 -4.9548 -5.0634 4.2640 27 14 -5.2864 -6.3466 6.6968 28 1 -5.0908 -5.3381 7.7692 29 1 -6.7335 -6.4629 6.3845 30 1 -4.7715 -7.6621 7.1547 31 1 -0.3634 0.0001 1.0276 32 1 -0.3633 0.8901 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 4.4004 1.3686 0.0120 35 1 5.0993 -1.6740 -1.0274 36 1 5.6025 -0.9398 0.5140 37 1 4.5960 -2.4080 0.5141 38 1 0.8894 -2.6083 -0.5122 39 1 2.5877 -3.1412 -0.5113 40 1 0.8864 -1.7506 2.8899 41 1 0.0207 -1.7123 1.3295 42 1 -0.8128 -3.2293 3.5081 43 1 -1.1739 -3.6726 1.8083 44 1 1.3669 -4.6902 -0.7163 45 1 -0.1916 -4.3649 0.0803 46 1 1.4122 -6.9568 0.1720 47 1 -0.1643 -6.6981 -0.6142 48 1 -0.9281 -7.4349 3.8204 49 1 -0.3680 -5.9730 4.6674 50 1 -2.2594 -4.6906 3.7048 51 1 -2.8195 -6.1524 2.8577 52 1 -5.8751 -4.7865 4.3947 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274352452.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:53:23 Heat of formation + Delta-G solvation = 16.035199 kcal Electronic energy + Delta-G solvation = -32064.813039 eV Core-core repulsion = 28064.380259 eV Total energy + Delta-G solvation = -4000.432779 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.06789 -42.04458 -39.76510 -36.93033 -35.39991 -35.19677 -34.38162 -33.42280 -31.77542 -30.97591 -29.19410 -28.91060 -27.06265 -26.93377 -25.76918 -24.72278 -23.54715 -22.39667 -22.03445 -21.43891 -20.12969 -19.17095 -18.53555 -17.95386 -17.69181 -17.29541 -17.13304 -16.64887 -16.47766 -16.21124 -15.78942 -15.51413 -15.28631 -14.89243 -14.71792 -14.51223 -14.32072 -14.26444 -13.97459 -13.86008 -13.64113 -13.45057 -13.38416 -13.24848 -13.08316 -13.04572 -12.90590 -12.83334 -12.68163 -12.58405 -12.40584 -12.19158 -11.96685 -11.82122 -11.71230 -11.50840 -11.37641 -10.78598 -10.58780 -10.54832 -10.32185 -9.61954 -9.42615 -9.04934 -8.22952 -6.34440 1.09067 1.37016 1.39350 1.50129 1.66583 2.02179 2.08975 2.20549 2.40108 2.97608 3.10478 3.39036 3.47292 3.68242 3.76355 3.79132 3.90532 4.03761 4.10250 4.15148 4.20356 4.25703 4.31941 4.35902 4.40906 4.43131 4.53738 4.56272 4.60046 4.69607 4.76860 4.78593 4.81874 4.85121 4.86134 4.87519 4.95376 5.02212 5.05445 5.12812 5.15035 5.28610 5.34078 5.47810 5.50381 5.62266 5.79979 5.82820 5.88022 5.97002 6.18579 6.43211 6.63470 6.80816 7.22908 7.25312 7.34450 8.88818 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.002882 C = 0.002558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.269478 B = 9712.669577 C =10943.523302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.022 4.022 3 N -0.538 5.538 4 C 0.180 3.820 5 N -0.449 5.449 6 C 0.066 3.934 7 C -0.014 4.014 8 C 0.125 3.875 9 N -0.508 5.508 10 C 0.044 3.956 11 C -0.149 4.149 12 C 0.136 3.864 13 H 0.101 0.899 14 C 0.081 3.919 15 H 0.133 0.867 16 C -0.143 4.143 17 C -0.118 4.118 18 C 0.497 3.503 19 O -0.606 6.606 20 N -0.585 5.585 21 C 0.122 3.878 22 C 0.029 3.971 23 C -0.544 4.544 24 H 0.061 0.939 25 C 0.002 3.998 26 N -0.930 5.930 27 Si 0.966 3.034 28 H -0.266 1.266 29 H -0.283 1.283 30 H -0.265 1.265 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.235 0.765 35 H 0.091 0.909 36 H 0.105 0.895 37 H 0.094 0.906 38 H 0.066 0.934 39 H 0.110 0.890 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.117 0.883 45 H 0.055 0.945 46 H 0.130 0.870 47 H 0.101 0.899 48 H 0.053 0.947 49 H 0.080 0.920 50 H 0.011 0.989 51 H -0.030 1.030 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.905 8.736 -12.326 29.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.152 4.152 3 N -0.258 5.258 4 C -0.102 4.102 5 N -0.130 5.130 6 C -0.075 4.075 7 C -0.130 4.130 8 C -0.003 4.003 9 N -0.231 5.231 10 C -0.083 4.083 11 C -0.188 4.188 12 C 0.032 3.968 13 H 0.119 0.881 14 C -0.027 4.027 15 H 0.151 0.849 16 C -0.181 4.181 17 C -0.158 4.158 18 C 0.288 3.712 19 O -0.488 6.488 20 N -0.315 5.315 21 C 0.000 4.000 22 C -0.009 4.009 23 C -0.582 4.582 24 H 0.079 0.921 25 C -0.196 4.196 26 N -0.570 5.570 27 Si 0.790 3.210 28 H -0.192 1.192 29 H -0.209 1.209 30 H -0.190 1.190 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.251 0.749 35 H 0.109 0.891 36 H 0.124 0.876 37 H 0.113 0.887 38 H 0.084 0.916 39 H 0.128 0.872 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.136 0.864 45 H 0.074 0.926 46 H 0.148 0.852 47 H 0.120 0.880 48 H 0.072 0.928 49 H 0.099 0.901 50 H 0.030 0.970 51 H -0.012 1.012 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 24.804 9.169 -12.098 29.080 hybrid contribution -1.854 -0.986 0.580 2.178 sum 22.950 8.183 -11.517 26.950 Atomic orbital electron populations 1.20159 0.88161 1.02613 1.01950 1.20681 0.96622 0.88805 1.09062 1.70115 1.02158 1.31703 1.21823 1.25468 0.97165 0.82674 1.04918 1.45398 1.06976 1.07666 1.53009 1.22336 0.84094 0.96269 1.04757 1.20870 0.84153 0.96419 1.11540 1.20650 1.01493 0.88425 0.89736 1.63977 1.39977 1.03283 1.15872 1.23029 0.89865 0.95729 0.99719 1.23186 0.98058 0.95985 1.01591 1.21806 0.92271 0.81703 1.01031 0.88097 1.23239 0.98414 0.88799 0.92233 0.84903 1.22583 1.01454 0.94130 0.99964 1.21585 1.02930 0.98627 0.92673 1.21171 0.80815 0.82511 0.86723 1.90708 1.44698 1.28917 1.84518 1.47082 1.48883 1.22172 1.13317 1.21481 0.93042 0.99199 0.86322 1.19179 0.91462 0.95522 0.94687 1.21564 0.98190 1.32251 1.06230 0.92109 1.25952 0.98629 0.94978 1.00029 1.70101 1.13070 1.37264 1.36603 0.85439 0.77372 0.79104 0.79088 1.19163 1.20889 1.18984 0.91624 0.91726 0.90622 0.74902 0.89055 0.87645 0.88740 0.91617 0.87173 0.90927 0.90568 0.92056 0.93007 0.86434 0.92624 0.85233 0.88022 0.92835 0.90124 0.97046 1.01208 0.92808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 8.45 71.23 0.60 -0.92 16 2 C -0.02 -0.51 6.84 41.39 0.28 -0.23 16 3 N -0.54 -13.24 11.25 -188.32 -2.12 -15.36 16 4 C 0.18 3.00 12.56 180.26 2.26 5.26 16 5 N -0.45 -6.25 3.15 -537.87 -1.70 -7.95 16 6 C 0.07 0.32 10.87 127.77 1.39 1.71 16 7 C -0.01 -0.24 6.07 40.96 0.25 0.00 16 8 C 0.13 1.75 3.34 85.56 0.29 2.04 16 9 N -0.51 -8.62 5.15 -860.67 -4.43 -13.05 16 10 C 0.04 1.00 6.31 86.67 0.55 1.55 16 11 C -0.15 -4.37 4.70 31.75 0.15 -4.22 16 12 C 0.14 3.59 3.14 46.40 0.15 3.73 16 13 H 0.10 2.51 8.01 -2.39 -0.02 2.49 16 14 C 0.08 1.39 3.56 45.72 0.16 1.55 16 15 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 16 C -0.14 -2.36 3.94 31.21 0.12 -2.23 16 17 C -0.12 -2.54 6.09 29.70 0.18 -2.36 16 18 C 0.50 17.75 7.47 87.77 0.66 18.40 16 19 O -0.61 -28.63 16.20 -3.02 -0.05 -28.68 16 20 N -0.59 -20.47 2.51 -798.80 -2.00 -22.47 16 21 C 0.12 5.37 5.06 86.38 0.44 5.81 16 22 C 0.03 1.61 5.07 29.85 0.15 1.76 16 23 C -0.54 -31.99 9.11 25.60 0.23 -31.76 16 24 H 0.06 3.42 7.74 -2.91 -0.02 3.40 16 25 C 0.00 0.13 5.46 84.65 0.46 0.59 16 26 N -0.93 -58.10 13.29 21.45 0.28 -57.82 16 27 Si 0.97 45.53 29.54 68.60 2.03 47.56 16 28 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 29 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 30 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 31 H 0.07 1.46 7.02 -2.39 -0.02 1.45 16 32 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 33 H 0.08 1.41 6.90 -2.39 -0.02 1.39 16 34 H 0.23 1.90 8.06 -2.91 -0.02 1.88 16 35 H 0.09 0.16 8.14 -2.39 -0.02 0.14 16 36 H 0.10 0.12 8.14 -2.39 -0.02 0.11 16 37 H 0.09 0.45 7.80 -2.39 -0.02 0.43 16 38 H 0.07 0.98 5.84 -2.39 -0.01 0.96 16 39 H 0.11 0.94 7.08 -2.39 -0.02 0.92 16 40 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 41 H 0.08 1.70 3.34 -2.39 -0.01 1.70 16 42 H 0.06 2.11 7.37 -2.39 -0.02 2.10 16 43 H 0.05 1.78 7.36 -2.38 -0.02 1.76 16 44 H 0.12 1.08 6.49 -2.39 -0.02 1.06 16 45 H 0.05 1.18 6.58 -2.39 -0.02 1.17 16 46 H 0.13 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.10 2.19 8.14 -2.39 -0.02 2.17 16 48 H 0.05 2.58 7.14 -2.39 -0.02 2.56 16 49 H 0.08 3.18 7.90 -2.39 -0.02 3.16 16 50 H 0.01 0.63 6.11 -2.39 -0.01 0.62 16 51 H -0.03 -1.96 8.14 -2.39 -0.02 -1.98 16 52 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -84.54 394.63 1.26 -83.29 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.92 Total: 13.80 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 8.32 Total: 0.68 kcal Atomic # 7 Polarization: -106.69 SS G_CDS: -9.96 Total: -116.65 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.05 Total: -28.68 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.56 kcal Total: -84.54 1.26 -83.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274352452.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.321 kcal (2) G-P(sol) polarization free energy of solvation -84.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds