Wall clock time and date at job start Wed Apr 1 2020 04:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34850 * 125.96435 * 2 1 4 4 N 1.36311 * 106.68718 * 179.97438 * 3 2 1 5 5 C 1.35419 * 107.39914 * 0.03869 * 4 3 2 6 6 N 1.30090 * 108.62992 * 359.94728 * 5 4 3 7 7 C 1.51071 * 123.99756 * 179.83732 * 5 4 3 8 8 C 1.53406 * 108.19132 * 344.09762 * 7 5 4 9 9 H 1.09002 * 109.51048 * 288.83098 * 8 7 5 10 10 C 1.50700 * 109.51073 * 168.73187 * 8 7 5 11 11 O 1.21284 * 119.99620 * 275.11392 * 10 8 7 12 12 N 1.34776 * 120.00022 * 95.10882 * 10 8 7 13 13 C 1.48308 * 127.76759 * 354.86134 * 12 10 8 14 14 C 1.54394 * 104.53663 * 219.51417 * 13 12 10 15 15 C 1.54285 * 105.05250 * 336.26029 * 14 13 12 16 16 C 1.53005 * 110.34273 * 118.92061 * 15 14 13 17 17 C 1.52998 * 110.34252 * 241.07805 * 15 14 13 18 18 N 1.46503 * 109.46969 * 298.54369 * 17 15 14 19 19 C 1.36935 * 120.00024 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99885 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00063 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00064 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99810 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47712 * 59.99316 * 23 21 19 25 25 H 1.48502 * 109.46953 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46665 * 299.99042 * 23 21 19 27 27 C 1.48145 * 127.83563 * 174.92843 * 12 10 8 28 28 C 1.53154 * 109.27428 * 48.78177 * 8 7 5 29 29 C 1.46480 * 127.77638 * 180.02562 * 4 3 2 30 30 H 1.09010 * 109.47307 * 269.99472 * 1 2 3 31 31 H 1.08998 * 109.47358 * 29.99116 * 1 2 3 32 32 H 1.09000 * 109.47731 * 149.99742 * 1 2 3 33 33 H 1.07998 * 126.65938 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.75849 * 224.40656 * 7 5 4 35 35 H 1.08996 * 109.68739 * 103.74808 * 7 5 4 36 36 H 1.08999 * 110.38505 * 100.79164 * 13 12 10 37 37 H 1.08994 * 110.51272 * 338.30340 * 13 12 10 38 38 H 1.08995 * 110.34367 * 217.33889 * 14 13 12 39 39 H 1.08998 * 110.34279 * 95.18545 * 14 13 12 40 40 H 1.09003 * 109.46617 * 61.45514 * 16 15 14 41 41 H 1.08998 * 109.47255 * 181.45273 * 16 15 14 42 42 H 1.08998 * 109.47108 * 301.45563 * 16 15 14 43 43 H 1.08997 * 109.47028 * 58.54866 * 17 15 14 44 44 H 1.09002 * 109.46576 * 178.54742 * 17 15 14 45 45 H 0.96998 * 119.99807 * 0.02562 * 18 17 15 46 46 H 0.97002 * 120.00232 * 180.02562 * 22 21 19 47 47 H 1.08990 * 110.40918 * 21.63672 * 27 12 10 48 48 H 1.08996 * 110.50644 * 259.24848 * 27 12 10 49 49 H 1.08996 * 109.46712 * 50.55269 * 28 8 7 50 50 H 1.09000 * 109.46251 * 170.53538 * 28 8 7 51 51 H 1.09005 * 109.58153 * 43.10823 * 29 4 3 52 52 H 1.09003 * 109.69395 * 282.76479 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6414 0.0006 5 6 3.5412 -0.7120 0.0001 6 7 2.2955 -1.0870 0.0003 7 6 4.7653 -1.5973 -0.0031 8 6 5.9739 -0.7421 -0.4048 9 1 5.9054 -0.4893 -1.4629 10 6 7.2431 -1.5145 -0.1529 11 8 7.7490 -1.5068 0.9494 12 7 7.8159 -2.2140 -1.1525 13 6 7.2963 -2.4285 -2.5249 14 6 7.6447 -3.8979 -2.8459 15 6 8.8357 -4.2375 -1.9258 16 6 8.4668 -5.3810 -0.9785 17 6 10.0619 -4.6136 -2.7600 18 7 9.7610 -5.8020 -3.5622 19 6 10.7147 -6.3268 -4.3929 20 1 11.6886 -5.8644 -4.4570 21 6 10.4294 -7.4525 -5.1534 22 7 9.2424 -8.0157 -5.0756 23 14 11.7308 -8.1687 -6.2860 24 1 12.9176 -8.5667 -5.4873 25 1 11.1805 -9.3600 -6.9813 26 1 12.1287 -7.1492 -7.2898 27 6 9.1053 -2.9431 -1.1287 28 6 5.9832 0.5428 0.4286 29 6 4.8148 1.4381 0.0013 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3634 -0.8899 -0.5139 33 1 1.9764 2.1221 -0.0004 34 1 4.6328 -2.4067 -0.7210 35 1 4.9222 -2.0106 0.9932 36 1 7.7916 -1.7583 -3.2274 37 1 6.2170 -2.2791 -2.5523 38 1 7.9333 -3.9991 -3.8921 39 1 6.7969 -4.5457 -2.6231 40 1 8.2289 -6.2719 -1.5598 41 1 9.3082 -5.5919 -0.3185 42 1 7.6005 -5.0940 -0.3826 43 1 10.3202 -3.7855 -3.4199 44 1 10.9010 -4.8255 -2.0973 45 1 8.8862 -6.2171 -3.5048 46 1 9.0431 -8.8026 -5.6067 47 1 9.3889 -3.1803 -0.1034 48 1 9.8855 -2.3549 -1.6117 49 1 5.8816 0.2918 1.4844 50 1 6.9230 1.0718 0.2698 51 1 4.7133 2.2659 0.7033 52 1 5.0003 1.8283 -0.9994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278512282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:10 Heat of formation + Delta-G solvation = 31.028525 kcal Electronic energy + Delta-G solvation = -30804.124536 eV Core-core repulsion = 26804.341916 eV Total energy + Delta-G solvation = -3999.782620 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.64508 -40.38744 -38.44838 -36.54392 -34.87025 -33.67736 -32.63477 -31.83530 -30.26294 -29.53790 -29.32058 -27.77862 -26.53924 -25.51717 -24.35088 -23.45693 -22.80493 -22.27600 -20.68166 -19.56730 -19.20217 -18.58606 -17.39692 -17.26394 -16.98927 -16.30904 -15.87080 -15.49879 -14.95747 -14.63844 -14.51009 -14.38367 -14.15041 -13.96181 -13.72898 -13.70694 -13.41646 -13.26835 -12.92056 -12.90333 -12.64528 -12.57788 -12.40960 -12.23238 -12.07967 -12.01263 -11.74004 -11.60217 -11.51961 -11.16475 -11.02431 -10.82183 -10.59555 -10.41599 -10.26578 -10.15905 -9.99383 -9.88453 -9.77406 -9.66633 -8.89032 -8.75661 -8.44091 -6.93863 -5.78413 -3.06861 1.75517 2.38030 2.44711 2.76094 2.84788 3.42776 3.47602 3.48329 3.85248 4.03642 4.11139 4.13505 4.51009 4.58181 4.60226 4.67832 4.74089 4.75824 4.82686 4.93818 5.00102 5.06381 5.08601 5.25738 5.28046 5.29396 5.40287 5.45337 5.47740 5.51262 5.57042 5.61678 5.64663 5.76052 5.79390 5.87351 5.91033 5.93182 6.04724 6.11776 6.20975 6.26560 6.42604 6.54465 6.56748 6.65429 6.77748 6.81893 6.88455 7.46202 7.68003 7.88768 7.99142 8.40657 9.52134 10.09401 10.44400 11.44273 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002100 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.287569 B =13330.129054 C =14196.052529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.004 4.004 3 C -0.056 4.056 4 N -0.456 5.456 5 C 0.216 3.784 6 N -0.483 5.483 7 C -0.020 4.020 8 C -0.107 4.107 9 H 0.098 0.902 10 C 0.542 3.458 11 O -0.541 6.541 12 N -0.616 5.616 13 C 0.098 3.902 14 C -0.124 4.124 15 C -0.079 4.079 16 C -0.130 4.130 17 C 0.167 3.833 18 N -0.728 5.728 19 C -0.240 4.240 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.115 3.885 28 C -0.117 4.117 29 C 0.105 3.895 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.173 0.827 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.074 0.926 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.021 0.979 44 H 0.021 0.979 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.083 0.917 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.095 0.905 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.786 22.292 10.194 27.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.133 4.133 3 C -0.189 4.189 4 N -0.140 5.140 5 C -0.046 4.046 6 N -0.202 5.202 7 C -0.060 4.060 8 C -0.129 4.129 9 H 0.116 0.884 10 C 0.330 3.670 11 O -0.418 6.418 12 N -0.349 5.349 13 C -0.025 4.025 14 C -0.162 4.162 15 C -0.080 4.080 16 C -0.188 4.188 17 C 0.039 3.961 18 N -0.373 5.373 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.008 4.008 28 C -0.155 4.155 29 C -0.017 4.017 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.191 0.809 34 H 0.120 0.880 35 H 0.116 0.884 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.088 0.912 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.220 0.780 46 H 0.065 0.935 47 H 0.101 0.899 48 H 0.092 0.908 49 H 0.107 0.893 50 H 0.113 0.887 51 H 0.113 0.887 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.564 21.629 10.777 27.237 hybrid contribution 0.731 0.348 -0.804 1.141 sum -11.833 21.977 9.973 26.879 Atomic orbital electron populations 1.20005 0.87657 1.02587 1.02078 1.20816 0.96510 0.88269 1.07709 1.22284 0.82791 1.00365 1.13416 1.45354 1.06544 1.07399 1.54676 1.23045 0.94621 0.81470 1.05504 1.69965 0.99601 1.30406 1.20253 1.20057 0.85700 0.95421 1.04795 1.21377 0.93310 0.95866 1.02373 0.88423 1.19790 0.84999 0.78926 0.83283 1.90720 1.64824 1.63569 1.22667 1.49070 1.22673 1.50635 1.12560 1.22590 0.99328 0.98174 0.82418 1.22647 0.98153 0.93775 1.01636 1.21669 0.96706 0.94160 0.95463 1.21779 1.00429 0.98122 0.98420 1.20657 0.92794 0.90587 0.92090 1.42346 1.15506 1.30064 1.49419 1.19167 0.94104 1.07656 1.16192 0.91301 1.24722 0.96901 0.98576 1.00694 1.69639 1.20409 1.23546 1.44569 0.86277 0.80853 0.78426 0.80666 1.21318 1.21725 1.21320 1.22462 0.84793 0.91953 1.01578 1.21750 0.97957 0.94229 1.01532 1.22015 0.81945 0.94298 1.03447 0.91562 0.91473 0.91161 0.80932 0.87991 0.88387 0.90793 0.90554 0.88755 0.90840 0.91152 0.92815 0.93646 0.96169 0.96132 0.78017 0.93451 0.89885 0.90802 0.89318 0.88685 0.88711 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.42 36.00 0.38 -0.14 16 2 C 0.00 -0.04 7.10 -82.72 -0.59 -0.63 16 3 C -0.06 -0.50 11.55 -16.76 -0.19 -0.69 16 4 N -0.46 -4.14 3.13 -113.74 -0.36 -4.49 16 5 C 0.22 2.45 7.65 -155.23 -1.19 1.26 16 6 N -0.48 -6.42 11.24 -6.88 -0.08 -6.50 16 7 C -0.02 -0.20 5.63 -27.49 -0.15 -0.36 16 8 C -0.11 -0.94 2.00 -91.48 -0.18 -1.13 16 9 H 0.10 0.74 6.99 -51.93 -0.36 0.37 16 10 C 0.54 6.51 6.88 -10.99 -0.08 6.44 16 11 O -0.54 -8.33 16.70 5.55 0.09 -8.23 16 12 N -0.62 -7.36 3.32 -169.18 -0.56 -7.92 16 13 C 0.10 1.04 6.60 -2.32 -0.02 1.02 16 14 C -0.12 -1.70 5.78 -25.33 -0.15 -1.85 16 15 C -0.08 -1.18 0.73 -153.10 -0.11 -1.29 16 16 C -0.13 -2.05 8.06 37.16 0.30 -1.75 16 17 C 0.17 3.12 4.91 -4.04 -0.02 3.10 16 18 N -0.73 -17.36 4.92 -59.91 -0.29 -17.66 16 19 C -0.24 -6.49 9.99 -15.06 -0.15 -6.64 16 20 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -27.51 13.06 55.49 0.72 -26.79 16 23 Si 0.91 22.04 29.55 -169.99 -5.02 17.01 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.11 1.53 6.17 -2.41 -0.01 1.51 16 28 C -0.12 -0.84 4.77 -26.51 -0.13 -0.97 16 29 C 0.11 0.61 6.98 -3.91 -0.03 0.58 16 30 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.17 0.95 8.06 -52.49 -0.42 0.53 16 34 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.10 1.05 8.11 -51.93 -0.42 0.63 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.68 7.16 -51.93 -0.37 0.30 16 38 H 0.09 1.48 7.49 -51.93 -0.39 1.09 16 39 H 0.07 1.02 7.71 -51.93 -0.40 0.62 16 40 H 0.07 1.26 7.00 -51.93 -0.36 0.90 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.02 0.38 8.12 -51.93 -0.42 -0.04 16 44 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 45 H 0.39 9.62 6.27 -40.82 -0.26 9.36 16 46 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 47 H 0.08 1.18 7.57 -51.93 -0.39 0.78 16 48 H 0.07 0.93 7.85 -51.93 -0.41 0.52 16 49 H 0.09 0.76 8.10 -51.93 -0.42 0.34 16 50 H 0.09 0.61 8.12 -51.93 -0.42 0.18 16 51 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 52 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -33.92 410.05 -10.56 -44.48 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -8.82 Total: 5.91 kcal Atomic # 6 Polarization: 0.42 SS G_CDS: -2.42 Total: -1.99 kcal Atomic # 7 Polarization: -62.79 SS G_CDS: -0.57 Total: -63.36 kcal Atomic # 8 Polarization: -8.33 SS G_CDS: 0.09 Total: -8.23 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.92 -10.56 -44.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278512282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.508 kcal (2) G-P(sol) polarization free energy of solvation -33.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds