Wall clock time and date at job start Wed Apr 1 2020 04:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34850 * 125.96435 * 2 1 4 4 N 1.36311 * 106.68718 * 179.97438 * 3 2 1 5 5 C 1.35419 * 107.39914 * 0.03869 * 4 3 2 6 6 N 1.30090 * 108.62992 * 359.94728 * 5 4 3 7 7 C 1.51071 * 123.99756 * 179.83732 * 5 4 3 8 8 C 1.53406 * 108.19132 * 344.09762 * 7 5 4 9 9 H 1.09002 * 109.51048 * 288.83098 * 8 7 5 10 10 C 1.50700 * 109.51073 * 168.73187 * 8 7 5 11 11 O 1.21284 * 119.99620 * 275.11392 * 10 8 7 12 12 N 1.34776 * 120.00022 * 95.10882 * 10 8 7 13 13 C 1.48308 * 127.76759 * 354.86134 * 12 10 8 14 14 C 1.54394 * 104.53663 * 219.51417 * 13 12 10 15 15 C 1.54285 * 105.05250 * 336.26029 * 14 13 12 16 16 C 1.53005 * 110.34273 * 118.92061 * 15 14 13 17 17 C 1.52998 * 110.34252 * 241.07805 * 15 14 13 18 18 N 1.46503 * 109.46969 * 298.54369 * 17 15 14 19 19 C 1.36935 * 120.00024 * 180.02562 * 18 17 15 20 20 H 1.08002 * 119.99885 * 359.97438 * 19 18 17 21 21 C 1.38810 * 120.00063 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00064 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99810 * 180.02562 * 21 19 18 24 24 H 1.48491 * 109.47712 * 59.99316 * 23 21 19 25 25 H 1.48502 * 109.46953 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.46665 * 299.99042 * 23 21 19 27 27 C 1.48145 * 127.83563 * 174.92843 * 12 10 8 28 28 C 1.53154 * 109.27428 * 48.78177 * 8 7 5 29 29 C 1.46480 * 127.77638 * 180.02562 * 4 3 2 30 30 H 1.09010 * 109.47307 * 269.99472 * 1 2 3 31 31 H 1.08998 * 109.47358 * 29.99116 * 1 2 3 32 32 H 1.09000 * 109.47731 * 149.99742 * 1 2 3 33 33 H 1.07998 * 126.65938 * 359.97438 * 3 2 1 34 34 H 1.08996 * 109.75849 * 224.40656 * 7 5 4 35 35 H 1.08996 * 109.68739 * 103.74808 * 7 5 4 36 36 H 1.08999 * 110.38505 * 100.79164 * 13 12 10 37 37 H 1.08994 * 110.51272 * 338.30340 * 13 12 10 38 38 H 1.08995 * 110.34367 * 217.33889 * 14 13 12 39 39 H 1.08998 * 110.34279 * 95.18545 * 14 13 12 40 40 H 1.09003 * 109.46617 * 61.45514 * 16 15 14 41 41 H 1.08998 * 109.47255 * 181.45273 * 16 15 14 42 42 H 1.08998 * 109.47108 * 301.45563 * 16 15 14 43 43 H 1.08997 * 109.47028 * 58.54866 * 17 15 14 44 44 H 1.09002 * 109.46576 * 178.54742 * 17 15 14 45 45 H 0.96998 * 119.99807 * 0.02562 * 18 17 15 46 46 H 0.97002 * 120.00232 * 180.02562 * 22 21 19 47 47 H 1.08990 * 110.40918 * 21.63672 * 27 12 10 48 48 H 1.08996 * 110.50644 * 259.24848 * 27 12 10 49 49 H 1.08996 * 109.46712 * 50.55269 * 28 8 7 50 50 H 1.09000 * 109.46251 * 170.53538 * 28 8 7 51 51 H 1.09005 * 109.58153 * 43.10823 * 29 4 3 52 52 H 1.09003 * 109.69395 * 282.76479 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5856 0.6414 0.0006 5 6 3.5412 -0.7120 0.0001 6 7 2.2955 -1.0870 0.0003 7 6 4.7653 -1.5973 -0.0031 8 6 5.9739 -0.7421 -0.4048 9 1 5.9054 -0.4893 -1.4629 10 6 7.2431 -1.5145 -0.1529 11 8 7.7490 -1.5068 0.9494 12 7 7.8159 -2.2140 -1.1525 13 6 7.2963 -2.4285 -2.5249 14 6 7.6447 -3.8979 -2.8459 15 6 8.8357 -4.2375 -1.9258 16 6 8.4668 -5.3810 -0.9785 17 6 10.0619 -4.6136 -2.7600 18 7 9.7610 -5.8020 -3.5622 19 6 10.7147 -6.3268 -4.3929 20 1 11.6886 -5.8644 -4.4570 21 6 10.4294 -7.4525 -5.1534 22 7 9.2424 -8.0157 -5.0756 23 14 11.7308 -8.1687 -6.2860 24 1 12.9176 -8.5667 -5.4873 25 1 11.1805 -9.3600 -6.9813 26 1 12.1287 -7.1492 -7.2898 27 6 9.1053 -2.9431 -1.1287 28 6 5.9832 0.5428 0.4286 29 6 4.8148 1.4381 0.0013 30 1 -0.3634 -0.0001 1.0277 31 1 -0.3634 0.8900 -0.5137 32 1 -0.3634 -0.8899 -0.5139 33 1 1.9764 2.1221 -0.0004 34 1 4.6328 -2.4067 -0.7210 35 1 4.9222 -2.0106 0.9932 36 1 7.7916 -1.7583 -3.2274 37 1 6.2170 -2.2791 -2.5523 38 1 7.9333 -3.9991 -3.8921 39 1 6.7969 -4.5457 -2.6231 40 1 8.2289 -6.2719 -1.5598 41 1 9.3082 -5.5919 -0.3185 42 1 7.6005 -5.0940 -0.3826 43 1 10.3202 -3.7855 -3.4199 44 1 10.9010 -4.8255 -2.0973 45 1 8.8862 -6.2171 -3.5048 46 1 9.0431 -8.8026 -5.6067 47 1 9.3889 -3.1803 -0.1034 48 1 9.8855 -2.3549 -1.6117 49 1 5.8816 0.2918 1.4844 50 1 6.9230 1.0718 0.2698 51 1 4.7133 2.2659 0.7033 52 1 5.0003 1.8283 -0.9994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001278512282.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:09 Heat of formation + Delta-G solvation = 10.981790 kcal Electronic energy + Delta-G solvation = -30804.993827 eV Core-core repulsion = 26804.341916 eV Total energy + Delta-G solvation = -4000.651912 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.34221 -41.39971 -39.55677 -37.30545 -36.44597 -34.57842 -34.09122 -32.48910 -32.01345 -30.62207 -30.04087 -28.59531 -27.73576 -27.04070 -25.14621 -24.57298 -24.07217 -23.40606 -21.40633 -20.38567 -20.17515 -19.70379 -19.16891 -18.18317 -17.78724 -17.09102 -16.94543 -16.56326 -16.35015 -15.84011 -15.48532 -15.24836 -15.11297 -15.05471 -14.95122 -14.74459 -14.59607 -14.27132 -14.10864 -13.87770 -13.72580 -13.51007 -13.43279 -13.15394 -13.01484 -12.85629 -12.80177 -12.77468 -12.63487 -12.41955 -12.30074 -12.17556 -12.11397 -12.05672 -11.67156 -11.54699 -11.35229 -10.96612 -10.89498 -10.85530 -10.47465 -9.77571 -9.13075 -8.94362 -7.91680 -5.19019 1.07182 1.44414 1.49237 1.51425 1.57437 1.80406 1.87646 2.07770 2.58528 3.08650 3.36293 3.42038 3.44958 3.50887 3.61579 3.66853 3.81949 3.96288 4.03007 4.10092 4.21942 4.24548 4.29446 4.34084 4.37894 4.39578 4.45246 4.49459 4.57083 4.63331 4.70572 4.74507 4.75805 4.78943 4.85279 4.91507 4.96071 4.99672 5.03483 5.05768 5.06256 5.16586 5.17620 5.35329 5.37740 5.40983 5.45014 5.53598 5.88659 6.23396 6.30545 6.50661 7.03227 7.16202 7.38039 8.14727 8.38387 9.31470 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.018646 B = 0.002100 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.287569 B =13330.129054 C =14196.052529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.040 4.040 3 C -0.042 4.042 4 N -0.454 5.454 5 C 0.196 3.804 6 N -0.527 5.527 7 C -0.015 4.015 8 C -0.095 4.095 9 H 0.119 0.881 10 C 0.543 3.457 11 O -0.577 6.577 12 N -0.615 5.615 13 C 0.107 3.893 14 C -0.122 4.122 15 C -0.072 4.072 16 C -0.123 4.123 17 C 0.167 3.833 18 N -0.738 5.738 19 C -0.242 4.242 20 H 0.075 0.925 21 C -0.074 4.074 22 N -0.968 5.968 23 Si 0.970 3.030 24 H -0.281 1.281 25 H -0.298 1.298 26 H -0.277 1.277 27 C 0.121 3.879 28 C -0.113 4.113 29 C 0.105 3.895 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.056 0.944 33 H 0.210 0.790 34 H 0.099 0.901 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.100 0.900 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.043 0.957 41 H 0.050 0.950 42 H 0.055 0.945 43 H 0.030 0.970 44 H 0.017 0.983 45 H 0.377 0.623 46 H 0.250 0.750 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.070 0.930 50 H 0.109 0.891 51 H 0.120 0.880 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.763 25.598 9.757 30.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 C -0.175 4.175 4 N -0.136 5.136 5 C -0.067 4.067 6 N -0.248 5.248 7 C -0.055 4.055 8 C -0.117 4.117 9 H 0.137 0.863 10 C 0.333 3.667 11 O -0.457 6.457 12 N -0.347 5.347 13 C -0.015 4.015 14 C -0.161 4.161 15 C -0.073 4.073 16 C -0.181 4.181 17 C 0.040 3.960 18 N -0.381 5.381 19 C -0.373 4.373 20 H 0.093 0.907 21 C -0.267 4.267 22 N -0.619 5.619 23 Si 0.799 3.201 24 H -0.208 1.208 25 H -0.224 1.224 26 H -0.203 1.203 27 C -0.002 4.002 28 C -0.151 4.151 29 C -0.015 4.015 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.227 0.773 34 H 0.117 0.883 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.048 0.952 44 H 0.035 0.965 45 H 0.210 0.790 46 H 0.059 0.941 47 H 0.091 0.909 48 H 0.105 0.895 49 H 0.089 0.911 50 H 0.127 0.873 51 H 0.138 0.862 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -12.513 24.982 10.346 29.794 hybrid contribution 0.735 -0.650 -0.591 1.145 sum -11.778 24.332 9.755 28.739 Atomic orbital electron populations 1.20046 0.86302 1.03134 1.02487 1.21375 0.97829 0.88518 1.09119 1.22846 0.82276 1.01425 1.10979 1.45576 1.07693 1.06856 1.53519 1.23063 0.94276 0.82719 1.06598 1.69892 1.00968 1.32401 1.21545 1.19956 0.86143 0.95560 1.03834 1.21343 0.90611 0.95789 1.03943 0.86267 1.20329 0.85455 0.78486 0.82459 1.90707 1.65996 1.64836 1.24116 1.49101 1.22145 1.50293 1.13200 1.22621 1.01034 0.96020 0.81840 1.22553 0.97260 0.96199 1.00044 1.21519 0.95756 0.94798 0.95249 1.21691 1.00743 0.97425 0.98230 1.20778 0.94361 0.88924 0.91935 1.42510 1.14635 1.31378 1.49607 1.19575 0.94724 1.07324 1.15728 0.90749 1.25494 0.98853 0.99506 1.02817 1.69796 1.22263 1.24005 1.45822 0.85266 0.78491 0.77427 0.78892 1.20759 1.22427 1.20314 1.22294 0.86005 0.91256 1.00679 1.21735 0.99466 0.93774 1.00165 1.22275 0.79772 0.93893 1.05580 0.91193 0.89026 0.92490 0.77305 0.88310 0.90024 0.88779 0.88216 0.90685 0.91362 0.93817 0.93076 0.92589 0.95233 0.96531 0.79008 0.94118 0.90852 0.89479 0.91124 0.87304 0.86229 0.87000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.42 71.23 0.74 -0.17 16 2 C -0.04 -0.83 7.10 41.40 0.29 -0.53 16 3 C -0.04 -0.62 11.55 83.22 0.96 0.34 16 4 N -0.45 -7.04 3.13 -513.75 -1.61 -8.65 16 5 C 0.20 4.26 7.65 138.24 1.06 5.32 16 6 N -0.53 -14.00 11.24 -175.67 -1.98 -15.97 16 7 C -0.02 -0.30 5.63 30.10 0.17 -0.13 16 8 C -0.10 -1.47 2.00 -11.35 -0.02 -1.50 16 9 H 0.12 1.36 6.99 -2.39 -0.02 1.34 16 10 C 0.54 12.21 6.88 87.66 0.60 12.81 16 11 O -0.58 -17.38 16.70 -3.04 -0.05 -17.43 16 12 N -0.62 -13.54 3.32 -807.54 -2.68 -16.22 16 13 C 0.11 2.00 6.60 86.50 0.57 2.57 16 14 C -0.12 -3.28 5.78 31.50 0.18 -3.09 16 15 C -0.07 -2.14 0.73 -51.27 -0.04 -2.17 16 16 C -0.12 -3.97 8.06 71.98 0.58 -3.39 16 17 C 0.17 6.21 4.91 86.38 0.42 6.63 16 18 N -0.74 -35.62 4.92 -343.45 -1.69 -37.31 16 19 C -0.24 -13.10 9.99 84.03 0.84 -12.26 16 20 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 21 C -0.07 -4.19 5.50 84.86 0.47 -3.73 16 22 N -0.97 -58.26 13.06 21.65 0.28 -57.97 16 23 Si 0.97 45.55 29.55 68.60 2.03 47.57 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 26 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 27 C 0.12 3.06 6.17 86.54 0.53 3.59 16 28 C -0.11 -1.35 4.77 30.74 0.15 -1.20 16 29 C 0.11 0.82 6.98 86.47 0.60 1.42 16 30 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.08 1.82 8.11 -2.39 -0.02 1.80 16 36 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.10 1.46 7.16 -2.39 -0.02 1.44 16 38 H 0.07 2.34 7.49 -2.39 -0.02 2.32 16 39 H 0.07 1.89 7.71 -2.39 -0.02 1.87 16 40 H 0.04 1.63 7.00 -2.39 -0.02 1.61 16 41 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.03 1.07 8.12 -2.39 -0.02 1.05 16 44 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.38 19.36 6.27 -92.71 -0.58 18.78 16 46 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 47 H 0.07 2.03 7.57 -2.39 -0.02 2.01 16 48 H 0.09 2.00 7.85 -2.39 -0.02 1.99 16 49 H 0.07 1.12 8.10 -2.39 -0.02 1.11 16 50 H 0.11 1.03 8.12 -2.39 -0.02 1.01 16 51 H 0.12 0.41 8.14 -2.38 -0.02 0.39 16 52 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -75.46 410.05 2.74 -72.72 By element: Atomic # 1 Polarization: 28.43 SS G_CDS: 0.33 Total: 28.75 kcal Atomic # 6 Polarization: -3.60 SS G_CDS: 8.11 Total: 4.51 kcal Atomic # 7 Polarization: -128.45 SS G_CDS: -7.67 Total: -136.12 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.05 Total: -17.43 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.57 kcal Total: -75.46 2.74 -72.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278512282.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.698 kcal (2) G-P(sol) polarization free energy of solvation -75.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds