Wall clock time and date at job start Wed Apr 1 2020 04:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34854 * 125.96481 * 2 1 4 4 N 1.36314 * 106.68800 * 179.88729 * 3 2 1 5 5 C 1.35419 * 107.40017 * 0.40041 * 4 3 2 6 6 N 1.30095 * 108.62523 * 359.72320 * 5 4 3 7 7 C 1.51046 * 123.98291 * 179.67213 * 5 4 3 8 8 C 1.53387 * 108.21403 * 344.08954 * 7 5 4 9 9 H 1.08998 * 109.49630 * 288.86173 * 8 7 5 10 10 C 1.50700 * 109.54631 * 168.74926 * 8 7 5 11 11 O 1.21282 * 119.99804 * 240.19396 * 10 8 7 12 12 N 1.34780 * 120.00237 * 60.20037 * 10 8 7 13 13 C 1.47478 * 127.03076 * 0.02562 * 12 10 8 14 14 C 1.54003 * 107.08665 * 154.51556 * 13 12 10 15 15 C 1.54617 * 105.03998 * 1.30587 * 14 13 12 16 16 C 1.53002 * 110.73605 * 263.32808 * 15 14 13 17 17 C 1.52998 * 110.74059 * 140.18787 * 15 14 13 18 18 N 1.46503 * 109.47378 * 61.44947 * 17 15 14 19 19 C 1.36932 * 120.00128 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00308 * 359.97438 * 19 18 17 21 21 C 1.38815 * 120.00152 * 180.02562 * 19 18 17 22 22 N 1.31622 * 119.99653 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00104 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47478 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47080 * 119.99924 * 23 21 19 26 26 H 1.48505 * 109.47095 * 239.99514 * 23 21 19 27 27 C 1.48110 * 127.03523 * 179.70310 * 12 10 8 28 28 C 1.53147 * 109.25006 * 48.79078 * 8 7 5 29 29 C 1.46474 * 127.77386 * 180.21910 * 4 3 2 30 30 H 1.09002 * 109.47152 * 269.71471 * 1 2 3 31 31 H 1.09001 * 109.46980 * 149.71571 * 1 2 3 32 32 H 1.09004 * 109.47113 * 29.71552 * 1 2 3 33 33 H 1.08004 * 126.65234 * 0.02562 * 3 2 1 34 34 H 1.09005 * 109.70964 * 103.74282 * 7 5 4 35 35 H 1.08999 * 109.71542 * 224.38132 * 7 5 4 36 36 H 1.08999 * 109.91482 * 273.87924 * 13 12 10 37 37 H 1.09002 * 109.91809 * 34.96064 * 13 12 10 38 38 H 1.09005 * 110.32671 * 120.19432 * 14 13 12 39 39 H 1.08997 * 110.32828 * 242.31103 * 14 13 12 40 40 H 1.08998 * 109.47247 * 58.55045 * 16 15 14 41 41 H 1.09005 * 109.47223 * 178.54808 * 16 15 14 42 42 H 1.09000 * 109.47290 * 298.54379 * 16 15 14 43 43 H 1.08998 * 109.47473 * 181.44951 * 17 15 14 44 44 H 1.09007 * 109.46848 * 301.45240 * 17 15 14 45 45 H 0.96999 * 119.99573 * 359.97438 * 18 17 15 46 46 H 0.97000 * 119.99432 * 180.02562 * 22 21 19 47 47 H 1.09001 * 110.66120 * 337.77477 * 27 12 10 48 48 H 1.09001 * 110.66096 * 100.88598 * 27 12 10 49 49 H 1.09007 * 109.46829 * 170.51139 * 28 8 7 50 50 H 1.09002 * 109.47155 * 50.53440 * 28 8 7 51 51 H 1.08999 * 109.58335 * 282.88053 * 29 4 3 52 52 H 1.08998 * 109.58490 * 43.29154 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6415 0.0026 5 6 3.5414 -0.7120 -0.0050 6 7 2.2956 -1.0869 -0.0059 7 6 4.7656 -1.5968 -0.0122 8 6 5.9742 -0.7397 -0.4090 9 1 5.9057 -0.4813 -1.4657 10 6 7.2438 -1.5130 -0.1611 11 8 8.0745 -1.0833 0.6111 12 7 7.4561 -2.6819 -0.7976 13 6 6.5580 -3.3439 -1.7621 14 6 7.4369 -4.2308 -2.6636 15 6 8.8747 -4.0510 -2.1241 16 6 9.6307 -2.9982 -2.9372 17 6 9.6275 -5.3829 -2.1334 18 7 9.7275 -5.8779 -3.5087 19 6 10.3640 -7.0628 -3.7653 20 1 10.7926 -7.6324 -2.9540 21 6 10.4592 -7.5315 -5.0685 22 7 9.9372 -6.8371 -6.0573 23 14 11.3281 -9.1476 -5.4187 24 1 11.8240 -9.7291 -4.1455 25 1 10.3772 -10.0924 -6.0578 26 1 12.4742 -8.9057 -6.3315 27 6 8.6419 -3.5610 -0.6766 28 6 5.9829 0.5407 0.4312 29 6 4.8148 1.4381 0.0080 30 1 -0.3633 -0.0051 1.0277 31 1 -0.3633 -0.8874 -0.5183 32 1 -0.3633 0.8926 -0.5094 33 1 1.9763 2.1222 0.0004 34 1 4.9225 -2.0153 0.9820 35 1 4.6327 -2.4025 -0.7342 36 1 5.8315 -3.9590 -1.2311 37 1 6.0416 -2.5953 -2.3630 38 1 7.1302 -5.2737 -2.5836 39 1 7.3749 -3.8969 -3.6993 40 1 9.0944 -2.0503 -2.8923 41 1 10.6312 -2.8694 -2.5241 42 1 9.7052 -3.3247 -3.9745 43 1 10.6279 -5.2378 -1.7259 44 1 9.0888 -6.1089 -1.5243 45 1 9.3422 -5.3665 -4.2373 46 1 10.0035 -7.1648 -6.9679 47 1 9.5035 -2.9974 -0.3187 48 1 8.4308 -4.4028 -0.0171 49 1 6.9228 1.0705 0.2762 50 1 5.8804 0.2841 1.4856 51 1 4.9998 1.8314 -0.9916 52 1 4.7129 2.2624 0.7139 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001278512284.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:14 Heat of formation + Delta-G solvation = 30.323661 kcal Electronic energy + Delta-G solvation = -30867.847656 eV Core-core repulsion = 26868.034471 eV Total energy + Delta-G solvation = -3999.813185 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.65872 -40.46980 -38.42816 -36.55747 -34.93751 -33.74982 -32.56823 -31.82760 -30.31093 -29.57850 -29.24782 -27.73492 -26.62738 -25.51228 -24.47703 -23.44430 -22.67785 -22.27549 -20.69539 -19.54388 -19.32976 -18.63951 -17.40801 -17.17538 -16.97288 -16.33098 -15.95411 -15.41912 -15.01917 -14.65533 -14.56008 -14.40331 -14.10707 -14.00649 -13.86531 -13.70518 -13.36187 -13.23612 -12.99593 -12.79195 -12.69658 -12.58577 -12.48405 -12.19266 -12.04480 -12.00755 -11.71652 -11.60916 -11.48417 -11.28038 -11.04418 -10.84746 -10.57037 -10.40135 -10.26155 -10.17439 -10.01908 -9.88246 -9.78007 -9.68106 -8.90140 -8.72418 -8.45356 -6.93763 -5.79086 -3.07103 1.74820 2.41381 2.44307 2.78081 2.82966 3.42083 3.48288 3.50095 3.79185 4.03544 4.12065 4.15981 4.50291 4.58538 4.59402 4.68555 4.72271 4.75914 4.80202 4.94405 4.99700 5.05306 5.08823 5.23039 5.24089 5.30965 5.39648 5.46381 5.46784 5.51408 5.56964 5.62763 5.64188 5.75781 5.78210 5.85879 5.89930 5.93255 6.04292 6.12619 6.19472 6.26795 6.40128 6.51497 6.53331 6.61798 6.74276 6.81480 6.87770 7.44982 7.69208 7.87133 7.98229 8.40125 9.51885 10.09024 10.44030 11.43869 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.019040 B = 0.002102 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.231489 B =13314.973296 C =14226.667170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.004 4.004 3 C -0.055 4.055 4 N -0.456 5.456 5 C 0.214 3.786 6 N -0.483 5.483 7 C -0.027 4.027 8 C -0.108 4.108 9 H 0.104 0.896 10 C 0.540 3.460 11 O -0.541 6.541 12 N -0.612 5.612 13 C 0.096 3.904 14 C -0.120 4.120 15 C -0.078 4.078 16 C -0.128 4.128 17 C 0.168 3.832 18 N -0.728 5.728 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.115 3.885 28 C -0.115 4.115 29 C 0.104 3.896 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.173 0.827 34 H 0.094 0.906 35 H 0.105 0.895 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.042 0.958 41 H 0.053 0.947 42 H 0.069 0.931 43 H 0.022 0.978 44 H 0.022 0.978 45 H 0.385 0.615 46 H 0.254 0.746 47 H 0.084 0.916 48 H 0.075 0.925 49 H 0.102 0.898 50 H 0.083 0.917 51 H 0.087 0.913 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.980 19.268 12.624 27.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.134 4.134 3 C -0.188 4.188 4 N -0.139 5.139 5 C -0.049 4.049 6 N -0.203 5.203 7 C -0.066 4.066 8 C -0.130 4.130 9 H 0.122 0.878 10 C 0.328 3.672 11 O -0.419 6.419 12 N -0.345 5.345 13 C -0.027 4.027 14 C -0.158 4.158 15 C -0.080 4.080 16 C -0.185 4.185 17 C 0.040 3.960 18 N -0.373 5.373 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.007 4.007 28 C -0.153 4.153 29 C -0.018 4.018 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.191 0.809 34 H 0.112 0.888 35 H 0.124 0.876 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.040 0.960 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.102 0.898 48 H 0.094 0.906 49 H 0.120 0.880 50 H 0.101 0.899 51 H 0.106 0.894 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -14.618 18.738 13.116 27.145 hybrid contribution 0.573 0.171 -0.654 0.886 sum -14.044 18.909 12.462 26.648 Atomic orbital electron populations 1.20005 0.87659 1.02584 1.02067 1.20814 0.96501 0.88274 1.07764 1.22298 0.82818 1.00384 1.13325 1.45384 1.06593 1.07430 1.54525 1.23048 0.94633 0.81518 1.05653 1.69955 0.99592 1.30426 1.20280 1.20229 0.86033 0.95709 1.04647 1.21375 0.93119 0.95854 1.02665 0.87776 1.19791 0.87613 0.79718 0.80055 1.90715 1.46713 1.68043 1.36419 1.48781 1.21699 1.20682 1.43354 1.22352 0.93266 0.96141 0.90933 1.22562 0.93589 1.00497 0.99159 1.21783 0.95326 0.97253 0.93608 1.21693 0.99206 0.96649 1.00961 1.20595 0.96163 0.90165 0.89081 1.42325 1.68361 1.24674 1.01940 1.19269 1.27933 0.97285 0.92381 0.91154 1.24724 1.01595 0.98990 0.95696 1.69663 1.50427 1.39142 0.98988 0.86127 0.78905 0.83446 0.77772 1.20578 1.21899 1.21942 1.22503 0.88154 0.92970 0.97105 1.21729 0.98171 0.94487 1.00906 1.22054 0.81909 0.94373 1.03498 0.91576 0.91171 0.91473 0.80942 0.88771 0.87636 0.91040 0.91024 0.89498 0.90217 0.93850 0.92796 0.91224 0.96066 0.96028 0.78098 0.93595 0.89801 0.90637 0.87964 0.89873 0.89445 0.88703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.42 36.01 0.38 -0.12 16 2 C 0.00 -0.05 7.10 -82.72 -0.59 -0.63 16 3 C -0.06 -0.49 11.55 -16.76 -0.19 -0.68 16 4 N -0.46 -4.10 3.13 -113.76 -0.36 -4.45 16 5 C 0.21 2.34 7.65 -155.24 -1.19 1.15 16 6 N -0.48 -6.22 11.24 -6.88 -0.08 -6.30 16 7 C -0.03 -0.25 5.25 -27.51 -0.14 -0.40 16 8 C -0.11 -0.95 1.91 -91.49 -0.17 -1.12 16 9 H 0.10 0.82 7.89 -51.93 -0.41 0.41 16 10 C 0.54 6.43 7.23 -10.98 -0.08 6.35 16 11 O -0.54 -8.18 16.04 5.56 0.09 -8.09 16 12 N -0.61 -7.24 3.22 -169.99 -0.55 -7.79 16 13 C 0.10 1.01 5.23 -2.98 -0.02 1.00 16 14 C -0.12 -1.62 5.52 -25.36 -0.14 -1.76 16 15 C -0.08 -1.16 0.64 -152.82 -0.10 -1.26 16 16 C -0.13 -1.95 8.29 37.16 0.31 -1.65 16 17 C 0.17 3.16 5.09 -4.04 -0.02 3.14 16 18 N -0.73 -17.37 5.15 -59.91 -0.31 -17.67 16 19 C -0.24 -6.44 9.99 -15.06 -0.15 -6.59 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 23 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 24 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 27 C 0.12 1.52 5.97 -2.32 -0.01 1.51 16 28 C -0.11 -0.86 4.67 -26.52 -0.12 -0.98 16 29 C 0.10 0.62 6.98 -3.92 -0.03 0.59 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.17 0.95 8.06 -52.48 -0.42 0.53 16 34 H 0.09 0.89 8.11 -51.93 -0.42 0.47 16 35 H 0.11 0.93 5.65 -51.93 -0.29 0.64 16 36 H 0.07 0.68 7.48 -51.93 -0.39 0.29 16 37 H 0.07 0.65 7.26 -51.93 -0.38 0.27 16 38 H 0.09 1.29 7.85 -51.93 -0.41 0.88 16 39 H 0.08 1.13 7.86 -51.93 -0.41 0.72 16 40 H 0.04 0.60 8.10 -51.93 -0.42 0.18 16 41 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.21 7.11 -51.93 -0.37 0.84 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 45 H 0.38 9.57 6.38 -40.82 -0.26 9.31 16 46 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.08 1.18 7.75 -51.93 -0.40 0.78 16 48 H 0.08 0.96 8.03 -51.93 -0.42 0.54 16 49 H 0.10 0.76 7.79 -51.93 -0.40 0.35 16 50 H 0.08 0.70 8.12 -51.93 -0.42 0.28 16 51 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 52 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 406.40 15.07 6.12 6.12 Total: -1.00 -33.78 406.40 -10.49 -44.27 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -8.75 Total: 5.56 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.37 Total: -1.96 kcal Atomic # 7 Polarization: -62.41 SS G_CDS: -0.56 Total: -62.98 kcal Atomic # 8 Polarization: -8.18 SS G_CDS: 0.09 Total: -8.09 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.78 -10.49 -44.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001278512284.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.596 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds