Wall clock time and date at job start Wed Apr 1 2020 04:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34856 * 125.96182 * 2 1 4 4 N 1.36320 * 106.68660 * 180.02562 * 3 2 1 5 5 C 1.35422 * 107.39973 * 359.94847 * 4 3 2 6 6 N 1.30092 * 108.62722 * 0.06794 * 5 4 3 7 7 C 1.51039 * 123.98460 * 180.10427 * 5 4 3 8 8 C 1.53399 * 108.20886 * 15.94354 * 7 5 4 9 9 H 1.09004 * 109.54950 * 71.13145 * 8 7 5 10 10 C 1.50701 * 109.51031 * 191.25371 * 8 7 5 11 11 O 1.21275 * 120.00296 * 119.76487 * 10 8 7 12 12 N 1.34775 * 119.99951 * 299.75950 * 10 8 7 13 13 C 1.46494 * 120.00533 * 180.02562 * 12 10 8 14 14 C 1.52997 * 109.47713 * 180.02562 * 13 12 10 15 15 C 1.52994 * 109.47398 * 180.02562 * 14 13 12 16 16 H 1.08998 * 110.78337 * 56.77963 * 15 14 13 17 17 C 1.55155 * 110.72348 * 180.02562 * 15 14 13 18 18 C 1.54907 * 101.58383 * 153.86012 * 17 15 14 19 19 N 1.47420 * 104.83524 * 322.99460 * 18 17 15 20 20 C 1.36935 * 125.65209 * 204.16221 * 19 18 17 21 21 H 1.08004 * 120.00235 * 179.97438 * 20 19 18 22 22 C 1.38816 * 119.99734 * 359.95746 * 20 19 18 23 23 N 1.31614 * 120.00076 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00049 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47191 * 59.99988 * 24 22 20 26 26 H 1.48491 * 109.47370 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46931 * 300.00230 * 24 22 20 28 28 C 1.47026 * 108.70428 * 24.12518 * 19 18 17 29 29 C 1.53154 * 109.23905 * 311.18249 * 8 7 5 30 30 C 1.46467 * 127.77504 * 179.91037 * 4 3 2 31 31 H 1.09001 * 109.47275 * 90.00167 * 1 2 3 32 32 H 1.08998 * 109.47431 * 210.00388 * 1 2 3 33 33 H 1.09000 * 109.47532 * 330.00327 * 1 2 3 34 34 H 1.08001 * 126.66087 * 0.03737 * 3 2 1 35 35 H 1.08994 * 109.71834 * 256.26439 * 7 5 4 36 36 H 1.09002 * 109.71558 * 135.61869 * 7 5 4 37 37 H 0.97006 * 119.99953 * 359.97438 * 12 10 8 38 38 H 1.09006 * 109.47216 * 59.99860 * 13 12 10 39 39 H 1.09002 * 109.46903 * 300.00754 * 13 12 10 40 40 H 1.08997 * 109.47174 * 59.99691 * 14 13 12 41 41 H 1.09004 * 109.46556 * 299.99843 * 14 13 12 42 42 H 1.09001 * 111.00015 * 35.78757 * 17 15 14 43 43 H 1.08994 * 111.03653 * 271.95454 * 17 15 14 44 44 H 1.08997 * 110.36783 * 204.15179 * 18 17 15 45 45 H 1.08999 * 110.36448 * 81.82920 * 18 17 15 46 46 H 0.97002 * 119.99964 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.88351 * 118.35702 * 28 19 18 48 48 H 1.08998 * 109.88379 * 239.52492 * 28 19 18 49 49 H 1.08999 * 109.46540 * 189.49696 * 29 8 7 50 50 H 1.09003 * 109.46503 * 309.47583 * 29 8 7 51 51 H 1.09005 * 109.58227 * 77.36655 * 30 4 3 52 52 H 1.09003 * 109.59062 * 316.95117 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0915 0.0000 4 7 3.5857 0.6415 -0.0006 5 6 3.5414 -0.7120 0.0002 6 7 2.2956 -1.0869 -0.0002 7 6 4.7654 -1.5968 0.0022 8 6 5.9743 -0.7418 0.4034 9 1 5.9069 -0.4885 1.4614 10 6 7.2433 -1.5143 0.1505 11 8 8.0734 -1.0813 -0.6202 12 7 7.4556 -2.6863 0.7811 13 6 8.6894 -3.4371 0.5358 14 6 8.6797 -4.7205 1.3687 15 6 9.9686 -5.5042 1.1130 16 1 10.8434 -4.8930 1.3349 17 6 9.9887 -6.8141 1.9444 18 6 10.9160 -7.7119 1.0878 19 7 10.5859 -7.3723 -0.3082 20 6 10.7774 -8.1845 -1.3939 21 1 10.5009 -7.8419 -2.3802 22 6 11.3273 -9.4481 -1.2269 23 7 11.6640 -9.8657 -0.0251 24 14 11.5879 -10.5565 -2.7078 25 1 12.5035 -9.8910 -3.6692 26 1 12.1840 -11.8424 -2.2650 27 1 10.2828 -10.8173 -3.3667 28 6 10.0160 -6.0174 -0.3417 29 6 5.9827 0.5429 -0.4305 30 6 4.8147 1.4382 -0.0026 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3634 -0.8899 0.5139 33 1 -0.3634 0.8900 0.5138 34 1 1.9763 2.1223 0.0006 35 1 4.9219 -2.0103 -0.9940 36 1 4.6330 -2.4061 0.7203 37 1 6.7918 -3.0325 1.3980 38 1 9.5479 -2.8273 0.8174 39 1 8.7558 -3.6913 -0.5221 40 1 7.8213 -5.3301 1.0867 41 1 8.6132 -4.4665 2.4266 42 1 8.9900 -7.2440 2.0203 43 1 10.4145 -6.6434 2.9331 44 1 10.7093 -8.7645 1.2813 45 1 11.9616 -7.4852 1.2962 46 1 12.0486 -10.7486 0.0915 47 1 10.6472 -5.3646 -0.9447 48 1 9.0086 -6.0491 -0.7567 49 1 6.9227 1.0719 -0.2731 50 1 5.8799 0.2914 -1.4861 51 1 5.0000 1.8266 0.9989 52 1 4.7126 2.2659 -0.7046 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317790427.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:39 Heat of formation + Delta-G solvation = 31.312585 kcal Electronic energy + Delta-G solvation = -29711.575134 eV Core-core repulsion = 25711.804831 eV Total energy + Delta-G solvation = -3999.770302 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.71434 -40.18480 -37.90425 -36.76547 -35.30072 -33.84523 -32.97282 -31.88813 -30.87827 -29.42794 -28.91170 -27.69298 -26.48638 -24.88183 -24.41786 -23.33769 -22.15854 -20.98315 -20.40430 -20.08046 -19.54078 -19.25204 -17.35296 -17.27387 -16.88031 -16.34483 -15.93515 -15.81180 -15.29090 -14.67647 -14.62015 -14.51906 -14.37777 -14.21103 -14.01221 -13.62820 -13.54754 -13.24427 -12.86191 -12.63568 -12.53699 -12.29243 -12.26189 -12.09439 -11.90686 -11.75704 -11.68527 -11.57914 -11.57221 -11.06392 -10.90039 -10.73121 -10.25278 -10.20392 -10.14904 -9.98262 -9.86826 -9.84191 -9.72721 -9.44625 -9.19947 -8.61467 -8.51670 -6.79129 -5.61923 -3.03235 1.68546 2.34003 2.38108 2.76395 2.89269 3.42911 3.46861 3.48277 3.75949 4.00054 4.08836 4.10492 4.52202 4.52744 4.58867 4.62836 4.68727 4.85664 4.90395 4.97006 5.02155 5.08604 5.19224 5.26238 5.29384 5.37850 5.42119 5.50089 5.56924 5.58208 5.60439 5.62972 5.72839 5.76951 5.88101 5.97945 6.01347 6.15633 6.21790 6.33584 6.39896 6.47404 6.62258 6.65023 6.78501 6.81638 6.99590 7.27303 7.55347 7.66389 7.80999 7.89014 7.97635 8.40236 9.26038 9.87184 10.52508 11.41896 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.001738 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.300138 B =16108.461341 C =16669.715320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.004 4.004 3 C -0.055 4.055 4 N -0.456 5.456 5 C 0.213 3.787 6 N -0.483 5.483 7 C -0.024 4.024 8 C -0.112 4.112 9 H 0.105 0.895 10 C 0.519 3.481 11 O -0.535 6.535 12 N -0.725 5.725 13 C 0.116 3.884 14 C -0.116 4.116 15 C -0.098 4.098 16 H 0.072 0.928 17 C -0.139 4.139 18 C 0.151 3.849 19 N -0.605 5.605 20 C -0.221 4.221 21 H 0.076 0.924 22 C -0.013 4.013 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.285 1.285 28 C 0.140 3.860 29 C -0.116 4.116 30 C 0.104 3.896 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.174 0.826 35 H 0.097 0.903 36 H 0.102 0.898 37 H 0.401 0.599 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.105 0.895 45 H 0.010 0.990 46 H 0.252 0.748 47 H 0.019 0.981 48 H 0.022 0.978 49 H 0.102 0.898 50 H 0.084 0.916 51 H 0.087 0.913 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.806 25.112 5.967 31.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.133 4.133 3 C -0.188 4.188 4 N -0.139 5.139 5 C -0.050 4.050 6 N -0.202 5.202 7 C -0.063 4.063 8 C -0.134 4.134 9 H 0.123 0.877 10 C 0.304 3.696 11 O -0.411 6.411 12 N -0.376 5.376 13 C -0.007 4.007 14 C -0.154 4.154 15 C -0.117 4.117 16 H 0.090 0.910 17 C -0.177 4.177 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.350 4.350 21 H 0.094 0.906 22 C -0.208 4.208 23 N -0.572 5.572 24 Si 0.745 3.255 25 H -0.212 1.212 26 H -0.216 1.216 27 H -0.212 1.212 28 C 0.014 3.986 29 C -0.154 4.154 30 C -0.018 4.018 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.085 0.915 34 H 0.191 0.809 35 H 0.115 0.885 36 H 0.120 0.880 37 H 0.235 0.765 38 H 0.086 0.914 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.123 0.877 45 H 0.028 0.972 46 H 0.062 0.938 47 H 0.037 0.963 48 H 0.040 0.960 49 H 0.121 0.879 50 H 0.102 0.898 51 H 0.105 0.895 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -17.245 24.502 5.343 30.435 hybrid contribution 0.186 0.271 -0.450 0.557 sum -17.059 24.773 4.892 30.473 Atomic orbital electron populations 1.20007 0.87638 1.02566 1.02147 1.20820 0.96520 0.88261 1.07720 1.22308 0.82815 1.00402 1.13279 1.45380 1.06598 1.07410 1.54551 1.23034 0.94644 0.81540 1.05773 1.69960 0.99609 1.30442 1.20223 1.20129 0.86022 0.95451 1.04742 1.21448 0.93205 0.96099 1.02665 0.87728 1.20215 0.87615 0.81295 0.80495 1.90739 1.46352 1.68426 1.35595 1.46103 1.22762 1.22151 1.46582 1.21550 0.85644 0.92251 1.01234 1.21786 0.99495 0.94908 0.99261 1.22094 0.95806 0.96320 0.97512 0.90988 1.23042 1.01143 0.95722 0.97834 1.21922 0.93419 1.00139 0.81912 1.44508 1.72902 1.11693 1.04002 1.19047 1.34540 0.94826 0.86581 0.90606 1.24785 1.01360 0.97698 0.96963 1.69791 1.48647 1.19226 1.19556 0.86154 0.77864 0.79932 0.81569 1.21249 1.21586 1.21176 1.21365 0.96208 0.87809 0.93246 1.21736 0.98147 0.94446 1.01098 1.22055 0.81914 0.94430 1.03435 0.91510 0.91178 0.91466 0.80916 0.88474 0.87985 0.76516 0.91412 0.90751 0.91066 0.91648 0.92181 0.92521 0.87685 0.97175 0.93750 0.96312 0.95963 0.87946 0.89764 0.89485 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.42 36.00 0.38 -0.09 16 2 C 0.00 -0.04 7.10 -82.72 -0.59 -0.63 16 3 C -0.06 -0.45 11.55 -16.76 -0.19 -0.64 16 4 N -0.46 -3.70 3.13 -113.76 -0.36 -4.06 16 5 C 0.21 2.13 7.65 -155.24 -1.19 0.94 16 6 N -0.48 -5.87 11.24 -6.88 -0.08 -5.95 16 7 C -0.02 -0.19 5.47 -27.51 -0.15 -0.34 16 8 C -0.11 -0.78 2.55 -91.48 -0.23 -1.01 16 9 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 10 C 0.52 5.27 7.13 -10.99 -0.08 5.19 16 11 O -0.53 -7.61 15.83 5.56 0.09 -7.53 16 12 N -0.72 -6.74 5.46 -60.30 -0.33 -7.06 16 13 C 0.12 1.38 5.52 -4.05 -0.02 1.35 16 14 C -0.12 -1.41 4.71 -26.74 -0.13 -1.54 16 15 C -0.10 -1.61 2.98 -88.79 -0.26 -1.87 16 16 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.14 -2.54 6.53 -24.58 -0.16 -2.70 16 18 C 0.15 3.68 5.89 -2.53 -0.01 3.66 16 19 N -0.61 -15.70 3.39 -170.07 -0.58 -16.28 16 20 C -0.22 -6.29 10.27 -15.06 -0.15 -6.44 16 21 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 22 C -0.01 -0.37 5.49 -17.43 -0.10 -0.46 16 23 N -0.92 -27.18 10.09 55.49 0.56 -26.62 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 28 C 0.14 2.90 5.99 -3.06 -0.02 2.88 16 29 C -0.12 -0.75 4.67 -26.52 -0.12 -0.87 16 30 C 0.10 0.52 6.98 -3.93 -0.03 0.50 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.17 0.84 8.06 -52.49 -0.42 0.41 16 35 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 36 H 0.10 0.68 7.95 -51.93 -0.41 0.26 16 37 H 0.40 2.65 8.20 -40.82 -0.33 2.32 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.04 7.49 -51.93 -0.39 0.65 16 40 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 43 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.11 2.88 5.87 -51.93 -0.30 2.57 16 45 H 0.01 0.27 8.14 -51.93 -0.42 -0.16 16 46 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 47 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.02 0.46 7.76 -51.93 -0.40 0.06 16 49 H 0.10 0.65 7.79 -51.93 -0.40 0.25 16 50 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 51 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 52 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 410.20 15.07 6.18 6.18 Total: -1.00 -35.68 410.20 -11.57 -47.25 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -8.97 Total: -1.22 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: -3.06 Total: -2.07 kcal Atomic # 7 Polarization: -59.18 SS G_CDS: -0.78 Total: -59.96 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.09 Total: -7.53 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.68 -11.57 -47.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317790427.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.559 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.247 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds