Wall clock time and date at job start Wed Apr 1 2020 04:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34859 * 125.96563 * 2 1 4 4 N 1.36311 * 106.69184 * 179.97438 * 3 2 1 5 5 C 1.35417 * 107.39874 * 0.04635 * 4 3 2 6 6 N 1.30091 * 108.63161 * 359.93915 * 5 4 3 7 7 C 1.51042 * 123.98522 * 179.86637 * 5 4 3 8 8 C 1.53397 * 108.19830 * 344.01483 * 7 5 4 9 9 H 1.08997 * 109.55206 * 288.89363 * 8 7 5 10 10 C 1.50705 * 109.50847 * 168.77940 * 8 7 5 11 11 O 1.21286 * 119.99901 * 240.23955 * 10 8 7 12 12 N 1.34775 * 120.00296 * 60.23368 * 10 8 7 13 13 C 1.46498 * 120.00104 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47158 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47162 * 179.97438 * 14 13 12 16 16 H 1.08995 * 110.64138 * 303.31275 * 15 14 13 17 17 C 1.55154 * 110.71880 * 179.97438 * 15 14 13 18 18 C 1.54910 * 101.58031 * 206.13651 * 17 15 14 19 19 N 1.47426 * 104.83209 * 37.01037 * 18 17 15 20 20 C 1.36932 * 125.64638 * 155.89300 * 19 18 17 21 21 H 1.08001 * 119.99867 * 179.97438 * 20 19 18 22 22 C 1.38814 * 120.00333 * 359.97290 * 20 19 18 23 23 N 1.31623 * 119.99950 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00071 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47007 * 90.00170 * 24 22 20 26 26 H 1.48501 * 109.46993 * 210.00274 * 24 22 20 27 27 H 1.48499 * 109.47317 * 330.00050 * 24 22 20 28 28 C 1.47019 * 108.70209 * 335.87354 * 19 18 17 29 29 C 1.53148 * 109.24169 * 48.85124 * 8 7 5 30 30 C 1.46476 * 127.77640 * 180.02562 * 4 3 2 31 31 H 1.09004 * 109.46748 * 269.99402 * 1 2 3 32 32 H 1.08996 * 109.47513 * 29.99714 * 1 2 3 33 33 H 1.09006 * 109.47280 * 149.99915 * 1 2 3 34 34 H 1.08005 * 126.64638 * 359.97438 * 3 2 1 35 35 H 1.08996 * 109.71623 * 224.34095 * 7 5 4 36 36 H 1.08998 * 109.71965 * 103.68935 * 7 5 4 37 37 H 0.97001 * 119.99894 * 0.02562 * 12 10 8 38 38 H 1.08997 * 109.47068 * 60.00288 * 13 12 10 39 39 H 1.09003 * 109.47323 * 300.00193 * 13 12 10 40 40 H 1.09002 * 109.46829 * 59.99675 * 14 13 12 41 41 H 1.09000 * 109.47369 * 300.00393 * 14 13 12 42 42 H 1.09002 * 111.00945 * 88.06458 * 17 15 14 43 43 H 1.08999 * 111.00353 * 324.20996 * 17 15 14 44 44 H 1.08998 * 110.36709 * 278.17139 * 18 17 15 45 45 H 1.09005 * 110.36466 * 155.84673 * 18 17 15 46 46 H 0.96997 * 120.00161 * 180.02562 * 23 22 20 47 47 H 1.09001 * 109.88389 * 120.48020 * 28 19 18 48 48 H 1.09003 * 109.87977 * 241.64361 * 28 19 18 49 49 H 1.09004 * 109.46206 * 50.52110 * 29 8 7 50 50 H 1.08992 * 109.46916 * 170.50405 * 29 8 7 51 51 H 1.09000 * 109.57643 * 43.12985 * 30 4 3 52 52 H 1.08999 * 109.69346 * 282.78774 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6416 0.0006 5 6 3.5414 -0.7119 -0.0001 6 7 2.2957 -1.0869 0.0002 7 6 4.7655 -1.5967 -0.0027 8 6 5.9737 -0.7418 -0.4056 9 1 5.9051 -0.4888 -1.4636 10 6 7.2431 -1.5143 -0.1543 11 8 8.0743 -1.0811 0.6155 12 7 7.4547 -2.6865 -0.7848 13 6 8.6883 -3.4377 -0.5400 14 6 8.6782 -4.7206 -1.3737 15 6 9.9669 -5.5048 -1.1186 16 1 10.8402 -4.8911 -1.3393 17 6 9.9866 -6.8141 -1.9508 18 6 10.9139 -7.7127 -1.0949 19 7 10.5839 -7.3738 0.3014 20 6 10.7764 -8.1864 1.3867 21 1 10.5007 -7.8441 2.3732 22 6 11.3258 -9.4501 1.2189 23 7 11.6621 -9.8671 0.0166 24 14 11.5890 -10.5583 2.6995 25 1 10.3763 -11.3866 2.9196 26 1 12.7555 -11.4438 2.4538 27 1 11.8445 -9.7253 3.9020 28 6 10.0143 -6.0189 0.3357 29 6 5.9834 0.5430 0.4280 30 6 4.8148 1.4383 0.0013 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5139 34 1 1.9762 2.1222 -0.0004 35 1 4.6324 -2.4064 -0.7201 36 1 4.9230 -2.0095 0.9937 37 1 6.7900 -3.0328 -1.4006 38 1 8.7552 -3.6919 0.5178 39 1 9.5469 -2.8282 -0.8222 40 1 8.6115 -4.4660 -2.4315 41 1 7.8197 -5.3302 -1.0920 42 1 10.4127 -6.6425 -2.9393 43 1 8.9878 -7.2438 -2.0268 44 1 11.9595 -7.4862 -1.3033 45 1 10.7068 -8.7651 -1.2890 46 1 12.0457 -10.7503 -0.1007 47 1 9.0069 -6.0506 0.7508 48 1 10.6457 -5.3666 0.9390 49 1 5.8819 0.2917 1.4838 50 1 6.9230 1.0720 0.2692 51 1 4.7133 2.2657 0.7035 52 1 5.0000 1.8288 -0.9993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317790428.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:42 Heat of formation + Delta-G solvation = 31.213378 kcal Electronic energy + Delta-G solvation = -29711.499924 eV Core-core repulsion = 25711.725320 eV Total energy + Delta-G solvation = -3999.774604 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.71483 -40.18373 -37.90572 -36.76502 -35.30081 -33.84553 -32.97428 -31.88839 -30.87899 -29.42879 -28.91278 -27.69324 -26.48746 -24.88383 -24.41933 -23.33805 -22.15969 -20.98354 -20.40516 -20.08258 -19.54155 -19.25289 -17.35438 -17.27428 -16.88273 -16.34426 -15.93580 -15.81247 -15.29190 -14.67887 -14.62108 -14.51896 -14.37893 -14.21123 -14.01182 -13.62423 -13.54773 -13.24446 -12.86210 -12.63607 -12.53874 -12.29441 -12.26224 -12.09453 -11.90958 -11.75754 -11.68765 -11.57970 -11.57383 -11.06477 -10.90513 -10.73921 -10.25323 -10.20379 -10.13393 -9.97481 -9.86912 -9.84236 -9.72975 -9.44951 -9.20038 -8.61937 -8.51697 -6.79187 -5.62270 -3.03515 1.68534 2.33905 2.38020 2.76343 2.89202 3.42074 3.47051 3.49079 3.75937 4.00029 4.08805 4.10408 4.51969 4.52653 4.58840 4.62854 4.68650 4.85660 4.90362 4.96989 5.02134 5.08481 5.19175 5.26237 5.29283 5.37835 5.42083 5.49887 5.56894 5.58143 5.60337 5.62968 5.72793 5.76895 5.87973 5.97929 6.01228 6.15502 6.21669 6.33487 6.39751 6.47366 6.62116 6.64879 6.78380 6.81591 6.99394 7.27238 7.55298 7.66637 7.80953 7.88835 7.97566 8.39955 9.25829 9.86952 10.52219 11.41661 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.001738 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.364735 B =16108.496796 C =16669.773367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.004 4.004 3 C -0.055 4.055 4 N -0.456 5.456 5 C 0.213 3.787 6 N -0.483 5.483 7 C -0.024 4.024 8 C -0.112 4.112 9 H 0.105 0.895 10 C 0.519 3.481 11 O -0.535 6.535 12 N -0.725 5.725 13 C 0.116 3.884 14 C -0.117 4.117 15 C -0.098 4.098 16 H 0.072 0.928 17 C -0.139 4.139 18 C 0.151 3.849 19 N -0.605 5.605 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.013 4.013 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.291 1.291 27 H -0.282 1.282 28 C 0.140 3.860 29 C -0.116 4.116 30 C 0.104 3.896 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.174 0.826 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.401 0.599 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.056 0.944 43 H 0.060 0.940 44 H 0.010 0.990 45 H 0.105 0.895 46 H 0.251 0.749 47 H 0.023 0.977 48 H 0.019 0.981 49 H 0.084 0.916 50 H 0.102 0.898 51 H 0.095 0.905 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.803 25.153 -5.935 31.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.133 4.133 3 C -0.188 4.188 4 N -0.139 5.139 5 C -0.050 4.050 6 N -0.202 5.202 7 C -0.063 4.063 8 C -0.134 4.134 9 H 0.123 0.877 10 C 0.304 3.696 11 O -0.411 6.411 12 N -0.376 5.376 13 C -0.007 4.007 14 C -0.155 4.155 15 C -0.117 4.117 16 H 0.090 0.910 17 C -0.177 4.177 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.349 4.349 21 H 0.094 0.906 22 C -0.208 4.208 23 N -0.572 5.572 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.217 1.217 27 H -0.208 1.208 28 C 0.014 3.986 29 C -0.154 4.154 30 C -0.018 4.018 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.191 0.809 35 H 0.120 0.880 36 H 0.115 0.885 37 H 0.235 0.765 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.028 0.972 45 H 0.123 0.877 46 H 0.062 0.938 47 H 0.040 0.960 48 H 0.037 0.963 49 H 0.102 0.898 50 H 0.121 0.879 51 H 0.113 0.887 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -17.235 24.554 -5.304 30.464 hybrid contribution 0.180 0.261 0.439 0.541 sum -17.055 24.815 -4.865 30.501 Atomic orbital electron populations 1.20008 0.87636 1.02566 1.02147 1.20823 0.96520 0.88261 1.07721 1.22307 0.82817 1.00405 1.13277 1.45374 1.06593 1.07408 1.54548 1.23033 0.94646 0.81540 1.05775 1.69962 0.99608 1.30441 1.20222 1.20130 0.86026 0.95452 1.04735 1.21446 0.93204 0.96098 1.02666 0.87730 1.20221 0.87629 0.81299 0.80478 1.90742 1.46306 1.68431 1.35641 1.46102 1.22731 1.22118 1.46642 1.21551 0.85649 0.92249 1.01227 1.21793 0.99508 0.94914 0.99259 1.22095 0.95811 0.96305 0.97515 0.90992 1.23041 1.01142 0.95711 0.97830 1.21926 0.93427 1.00136 0.81916 1.44516 1.72896 1.11693 1.04011 1.19093 1.34417 0.94796 0.86599 0.90551 1.24789 1.01375 0.97715 0.96967 1.69804 1.48779 1.19116 1.19513 0.86076 0.77376 0.80520 0.81572 1.21613 1.21676 1.20759 1.21364 0.96210 0.87803 0.93251 1.21734 0.98135 0.94443 1.01107 1.22049 0.81914 0.94424 1.03454 0.91509 0.91465 0.91176 0.80916 0.87984 0.88474 0.76515 0.90748 0.91415 0.91645 0.91072 0.92518 0.92168 0.97165 0.87686 0.93804 0.95959 0.96309 0.89763 0.87947 0.88713 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.42 36.00 0.38 -0.09 16 2 C 0.00 -0.04 7.10 -82.71 -0.59 -0.63 16 3 C -0.06 -0.45 11.55 -16.76 -0.19 -0.64 16 4 N -0.46 -3.70 3.13 -113.75 -0.36 -4.05 16 5 C 0.21 2.12 7.65 -155.24 -1.19 0.94 16 6 N -0.48 -5.87 11.24 -6.88 -0.08 -5.94 16 7 C -0.02 -0.19 5.47 -27.51 -0.15 -0.34 16 8 C -0.11 -0.78 2.55 -91.49 -0.23 -1.01 16 9 H 0.10 0.56 8.12 -51.93 -0.42 0.14 16 10 C 0.52 5.26 7.13 -10.98 -0.08 5.19 16 11 O -0.53 -7.61 15.83 5.55 0.09 -7.52 16 12 N -0.72 -6.73 5.46 -60.29 -0.33 -7.06 16 13 C 0.12 1.38 5.52 -4.04 -0.02 1.35 16 14 C -0.12 -1.41 4.71 -26.73 -0.13 -1.54 16 15 C -0.10 -1.60 2.98 -88.79 -0.26 -1.87 16 16 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 17 C -0.14 -2.53 6.53 -24.58 -0.16 -2.69 16 18 C 0.15 3.67 5.89 -2.53 -0.01 3.66 16 19 N -0.61 -15.70 3.39 -170.07 -0.58 -16.27 16 20 C -0.22 -6.26 10.27 -15.06 -0.15 -6.41 16 21 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 22 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 23 N -0.92 -27.18 10.09 55.49 0.56 -26.62 16 24 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 25 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 28 C 0.14 2.90 5.99 -3.07 -0.02 2.88 16 29 C -0.12 -0.75 4.67 -26.52 -0.12 -0.87 16 30 C 0.10 0.52 6.98 -3.92 -0.03 0.50 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.17 0.84 8.06 -52.48 -0.42 0.41 16 35 H 0.10 0.68 7.95 -51.93 -0.41 0.26 16 36 H 0.10 0.83 8.11 -51.93 -0.42 0.41 16 37 H 0.40 2.65 8.20 -40.82 -0.33 2.32 16 38 H 0.07 1.04 7.49 -51.93 -0.39 0.65 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.07 0.88 8.06 -51.93 -0.42 0.46 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.06 1.08 8.05 -51.93 -0.42 0.66 16 44 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.11 2.88 5.87 -51.93 -0.31 2.57 16 46 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 47 H 0.02 0.46 7.76 -51.93 -0.40 0.06 16 48 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 49 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 50 H 0.10 0.65 7.79 -51.93 -0.40 0.24 16 51 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 52 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 410.21 15.07 6.18 6.18 Total: -1.00 -35.70 410.21 -11.57 -47.27 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -8.97 Total: -1.26 kcal Atomic # 6 Polarization: 1.00 SS G_CDS: -3.06 Total: -2.07 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: -0.78 Total: -59.95 kcal Atomic # 8 Polarization: -7.61 SS G_CDS: 0.09 Total: -7.52 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.70 -11.57 -47.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317790428.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.479 kcal (2) G-P(sol) polarization free energy of solvation -35.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds