Wall clock time and date at job start Wed Apr 1 2020 04:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34859 * 125.96563 * 2 1 4 4 N 1.36311 * 106.69184 * 179.97438 * 3 2 1 5 5 C 1.35417 * 107.39874 * 0.04635 * 4 3 2 6 6 N 1.30091 * 108.63161 * 359.93915 * 5 4 3 7 7 C 1.51042 * 123.98522 * 179.86637 * 5 4 3 8 8 C 1.53397 * 108.19830 * 344.01483 * 7 5 4 9 9 H 1.08997 * 109.55206 * 288.89363 * 8 7 5 10 10 C 1.50705 * 109.50847 * 168.77940 * 8 7 5 11 11 O 1.21286 * 119.99901 * 240.23955 * 10 8 7 12 12 N 1.34775 * 120.00296 * 60.23368 * 10 8 7 13 13 C 1.46498 * 120.00104 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.47158 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.47162 * 179.97438 * 14 13 12 16 16 H 1.08995 * 110.64138 * 303.31275 * 15 14 13 17 17 C 1.55154 * 110.71880 * 179.97438 * 15 14 13 18 18 C 1.54910 * 101.58031 * 206.13651 * 17 15 14 19 19 N 1.47426 * 104.83209 * 37.01037 * 18 17 15 20 20 C 1.36932 * 125.64638 * 155.89300 * 19 18 17 21 21 H 1.08001 * 119.99867 * 179.97438 * 20 19 18 22 22 C 1.38814 * 120.00333 * 359.97290 * 20 19 18 23 23 N 1.31623 * 119.99950 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 120.00071 * 179.97438 * 22 20 19 25 25 H 1.48501 * 109.47007 * 90.00170 * 24 22 20 26 26 H 1.48501 * 109.46993 * 210.00274 * 24 22 20 27 27 H 1.48499 * 109.47317 * 330.00050 * 24 22 20 28 28 C 1.47019 * 108.70209 * 335.87354 * 19 18 17 29 29 C 1.53148 * 109.24169 * 48.85124 * 8 7 5 30 30 C 1.46476 * 127.77640 * 180.02562 * 4 3 2 31 31 H 1.09004 * 109.46748 * 269.99402 * 1 2 3 32 32 H 1.08996 * 109.47513 * 29.99714 * 1 2 3 33 33 H 1.09006 * 109.47280 * 149.99915 * 1 2 3 34 34 H 1.08005 * 126.64638 * 359.97438 * 3 2 1 35 35 H 1.08996 * 109.71623 * 224.34095 * 7 5 4 36 36 H 1.08998 * 109.71965 * 103.68935 * 7 5 4 37 37 H 0.97001 * 119.99894 * 0.02562 * 12 10 8 38 38 H 1.08997 * 109.47068 * 60.00288 * 13 12 10 39 39 H 1.09003 * 109.47323 * 300.00193 * 13 12 10 40 40 H 1.09002 * 109.46829 * 59.99675 * 14 13 12 41 41 H 1.09000 * 109.47369 * 300.00393 * 14 13 12 42 42 H 1.09002 * 111.00945 * 88.06458 * 17 15 14 43 43 H 1.08999 * 111.00353 * 324.20996 * 17 15 14 44 44 H 1.08998 * 110.36709 * 278.17139 * 18 17 15 45 45 H 1.09005 * 110.36466 * 155.84673 * 18 17 15 46 46 H 0.96997 * 120.00161 * 180.02562 * 23 22 20 47 47 H 1.09001 * 109.88389 * 120.48020 * 28 19 18 48 48 H 1.09003 * 109.87977 * 241.64361 * 28 19 18 49 49 H 1.09004 * 109.46206 * 50.52110 * 29 8 7 50 50 H 1.08992 * 109.46916 * 170.50405 * 29 8 7 51 51 H 1.09000 * 109.57643 * 43.12985 * 30 4 3 52 52 H 1.08999 * 109.69346 * 282.78774 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2990 1.0915 0.0000 4 7 3.5857 0.6416 0.0006 5 6 3.5414 -0.7119 -0.0001 6 7 2.2957 -1.0869 0.0002 7 6 4.7655 -1.5967 -0.0027 8 6 5.9737 -0.7418 -0.4056 9 1 5.9051 -0.4888 -1.4636 10 6 7.2431 -1.5143 -0.1543 11 8 8.0743 -1.0811 0.6155 12 7 7.4547 -2.6865 -0.7848 13 6 8.6883 -3.4377 -0.5400 14 6 8.6782 -4.7206 -1.3737 15 6 9.9669 -5.5048 -1.1186 16 1 10.8402 -4.8911 -1.3393 17 6 9.9866 -6.8141 -1.9508 18 6 10.9139 -7.7127 -1.0949 19 7 10.5839 -7.3738 0.3014 20 6 10.7764 -8.1864 1.3867 21 1 10.5007 -7.8441 2.3732 22 6 11.3258 -9.4501 1.2189 23 7 11.6621 -9.8671 0.0166 24 14 11.5890 -10.5583 2.6995 25 1 10.3763 -11.3866 2.9196 26 1 12.7555 -11.4438 2.4538 27 1 11.8445 -9.7253 3.9020 28 6 10.0143 -6.0189 0.3357 29 6 5.9834 0.5430 0.4280 30 6 4.8148 1.4383 0.0013 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3634 0.8900 -0.5138 33 1 -0.3634 -0.8900 -0.5139 34 1 1.9762 2.1222 -0.0004 35 1 4.6324 -2.4064 -0.7201 36 1 4.9230 -2.0095 0.9937 37 1 6.7900 -3.0328 -1.4006 38 1 8.7552 -3.6919 0.5178 39 1 9.5469 -2.8282 -0.8222 40 1 8.6115 -4.4660 -2.4315 41 1 7.8197 -5.3302 -1.0920 42 1 10.4127 -6.6425 -2.9393 43 1 8.9878 -7.2438 -2.0268 44 1 11.9595 -7.4862 -1.3033 45 1 10.7068 -8.7651 -1.2890 46 1 12.0457 -10.7503 -0.1007 47 1 9.0069 -6.0506 0.7508 48 1 10.6457 -5.3666 0.9390 49 1 5.8819 0.2917 1.4838 50 1 6.9230 1.0720 0.2692 51 1 4.7133 2.2657 0.7035 52 1 5.0000 1.8288 -0.9993 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317790428.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:41 Heat of formation + Delta-G solvation = 8.774601 kcal Electronic energy + Delta-G solvation = -29712.472943 eV Core-core repulsion = 25711.725320 eV Total energy + Delta-G solvation = -4000.747623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 346.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.32772 -41.01153 -39.44170 -37.43749 -36.43290 -34.84720 -34.31879 -32.50479 -32.38978 -30.76877 -29.91394 -28.50440 -27.81251 -26.54126 -25.08776 -24.23098 -23.23611 -21.94913 -21.68314 -21.20420 -20.57753 -20.09143 -18.89348 -18.08891 -17.84547 -17.16583 -16.98203 -16.74194 -16.51634 -16.31357 -15.59686 -15.35716 -15.17931 -15.16389 -14.87089 -14.61307 -14.46294 -14.26541 -13.87376 -13.74854 -13.55269 -13.46913 -13.33628 -13.12422 -13.09303 -12.82119 -12.80127 -12.70790 -12.59732 -12.27955 -12.19325 -12.13636 -12.01518 -11.76796 -11.54940 -11.42058 -11.24592 -10.94311 -10.83401 -10.73557 -10.46708 -10.09110 -9.12960 -8.87338 -7.77796 -5.21858 1.08229 1.44794 1.46775 1.54255 1.55467 1.85850 2.07881 2.12228 2.48973 3.15422 3.30993 3.48728 3.50698 3.59157 3.74955 3.77353 3.96545 3.97995 4.06254 4.13848 4.19392 4.25234 4.34010 4.36344 4.38785 4.47390 4.52091 4.64662 4.65264 4.73252 4.74108 4.77120 4.85623 4.90335 4.91312 5.03548 5.05294 5.07562 5.13746 5.17667 5.20550 5.28128 5.38497 5.44015 5.45123 5.53112 5.70189 5.84241 5.88727 6.24452 6.32715 6.53139 7.11756 7.16303 7.21636 7.80011 8.43577 9.23745 Molecular weight = 346.21amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.001738 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.364735 B =16108.496796 C =16669.773367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.039 4.039 3 C -0.046 4.046 4 N -0.455 5.455 5 C 0.195 3.805 6 N -0.526 5.526 7 C -0.020 4.020 8 C -0.097 4.097 9 H 0.131 0.869 10 C 0.519 3.481 11 O -0.579 6.579 12 N -0.713 5.713 13 C 0.123 3.877 14 C -0.101 4.101 15 C -0.084 4.084 16 H 0.079 0.921 17 C -0.122 4.122 18 C 0.148 3.852 19 N -0.629 5.629 20 C -0.241 4.241 21 H 0.076 0.924 22 C -0.069 4.069 23 N -0.948 5.948 24 Si 0.980 3.020 25 H -0.283 1.283 26 H -0.292 1.292 27 H -0.273 1.273 28 C 0.134 3.866 29 C -0.114 4.114 30 C 0.105 3.895 31 H 0.068 0.932 32 H 0.090 0.910 33 H 0.058 0.942 34 H 0.207 0.793 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.417 0.583 38 H 0.048 0.952 39 H 0.064 0.936 40 H 0.099 0.901 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.067 0.933 44 H -0.017 1.017 45 H 0.071 0.929 46 H 0.247 0.753 47 H 0.025 0.975 48 H 0.011 0.989 49 H 0.064 0.936 50 H 0.105 0.895 51 H 0.114 0.886 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.174 27.545 -7.169 34.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.168 4.168 3 C -0.179 4.179 4 N -0.138 5.138 5 C -0.068 4.068 6 N -0.247 5.247 7 C -0.059 4.059 8 C -0.119 4.119 9 H 0.149 0.851 10 C 0.306 3.694 11 O -0.458 6.458 12 N -0.365 5.365 13 C -0.001 4.001 14 C -0.139 4.139 15 C -0.103 4.103 16 H 0.098 0.902 17 C -0.160 4.160 18 C 0.023 3.977 19 N -0.355 5.355 20 C -0.370 4.370 21 H 0.094 0.906 22 C -0.261 4.261 23 N -0.598 5.598 24 Si 0.808 3.192 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.198 1.198 28 C 0.009 3.991 29 C -0.152 4.152 30 C -0.015 4.015 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.224 0.776 35 H 0.131 0.869 36 H 0.101 0.899 37 H 0.254 0.746 38 H 0.066 0.934 39 H 0.083 0.917 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.105 0.895 43 H 0.086 0.914 44 H 0.001 0.999 45 H 0.089 0.911 46 H 0.057 0.943 47 H 0.043 0.957 48 H 0.029 0.971 49 H 0.083 0.917 50 H 0.124 0.876 51 H 0.132 0.868 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -18.636 26.969 -6.560 33.431 hybrid contribution 0.618 -0.452 0.866 1.156 sum -18.018 26.517 -5.694 32.561 Atomic orbital electron populations 1.20045 0.86372 1.03161 1.02432 1.21359 0.97787 0.88560 1.09044 1.22832 0.82443 1.01410 1.11248 1.45587 1.07551 1.07059 1.53569 1.23239 0.94541 0.82672 1.06310 1.69899 1.00952 1.32209 1.21620 1.20109 0.85776 0.95698 1.04330 1.21377 0.90747 0.95560 1.04232 0.85108 1.20737 0.88050 0.81194 0.79430 1.90729 1.48057 1.69527 1.37531 1.45950 1.22262 1.21662 1.46657 1.21292 0.86742 0.92447 0.99630 1.21637 0.96881 0.94125 1.01252 1.22017 0.98694 0.95953 0.93686 0.90216 1.22878 0.99972 0.94953 0.98219 1.21770 0.93456 0.99708 0.82739 1.44864 1.73074 1.13498 1.04089 1.19447 1.34330 0.95601 0.87594 0.90619 1.25638 1.01611 0.99132 0.99735 1.70064 1.49389 1.19100 1.21231 0.85060 0.77071 0.78486 0.78606 1.21029 1.21830 1.19822 1.21572 0.95518 0.85509 0.96517 1.21697 0.99072 0.94544 0.99928 1.22256 0.79919 0.93966 1.05407 0.91343 0.89124 0.92307 0.77629 0.86854 0.89902 0.74597 0.93395 0.91725 0.88251 0.90822 0.89540 0.91448 0.99896 0.91143 0.94337 0.95692 0.97138 0.91709 0.87615 0.86773 0.87048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.83 10.42 71.23 0.74 -0.09 16 2 C -0.04 -0.74 7.10 41.40 0.29 -0.45 16 3 C -0.05 -0.63 11.55 83.22 0.96 0.33 16 4 N -0.45 -6.35 3.13 -513.80 -1.61 -7.96 16 5 C 0.20 3.69 7.65 138.24 1.06 4.74 16 6 N -0.53 -12.62 11.24 -175.69 -1.98 -14.59 16 7 C -0.02 -0.29 5.47 30.09 0.16 -0.13 16 8 C -0.10 -1.16 2.55 -11.36 -0.03 -1.19 16 9 H 0.13 0.93 8.12 -2.39 -0.02 0.91 16 10 C 0.52 9.80 7.13 87.66 0.63 10.42 16 11 O -0.58 -16.25 15.83 -3.05 -0.05 -16.30 16 12 N -0.71 -11.71 5.46 -463.05 -2.53 -14.24 16 13 C 0.12 2.70 5.52 86.38 0.48 3.18 16 14 C -0.10 -2.14 4.71 30.59 0.14 -2.00 16 15 C -0.08 -2.61 2.98 -9.61 -0.03 -2.63 16 16 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 17 C -0.12 -4.25 6.53 31.99 0.21 -4.04 16 18 C 0.15 7.38 5.89 86.86 0.51 7.89 16 19 N -0.63 -33.36 3.39 -691.99 -2.35 -35.71 16 20 C -0.24 -13.98 10.27 84.03 0.86 -13.12 16 21 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 22 C -0.07 -4.01 5.49 84.86 0.47 -3.54 16 23 N -0.95 -57.54 10.09 21.65 0.22 -57.32 16 24 Si 0.98 46.83 29.55 68.60 2.03 48.86 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 26 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 27 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 28 C 0.13 5.57 5.99 86.73 0.52 6.09 16 29 C -0.11 -1.27 4.67 30.73 0.14 -1.13 16 30 C 0.11 0.74 6.98 86.47 0.60 1.34 16 31 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 32 H 0.09 0.71 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 34 H 0.21 1.22 8.06 -2.91 -0.02 1.20 16 35 H 0.11 1.33 7.95 -2.39 -0.02 1.31 16 36 H 0.08 1.43 8.11 -2.39 -0.02 1.41 16 37 H 0.42 4.20 8.20 -92.71 -0.76 3.44 16 38 H 0.05 1.32 7.49 -2.39 -0.02 1.30 16 39 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.07 1.59 8.06 -2.39 -0.02 1.57 16 42 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 43 H 0.07 2.27 8.05 -2.39 -0.02 2.25 16 44 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 45 H 0.07 4.00 5.87 -2.38 -0.01 3.99 16 46 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 47 H 0.03 1.03 7.76 -2.39 -0.02 1.01 16 48 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.06 0.98 8.12 -2.38 -0.02 0.96 16 50 H 0.11 1.15 7.79 -2.39 -0.02 1.13 16 51 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 52 H 0.11 0.32 8.14 -2.39 -0.02 0.30 16 Total: -1.00 -81.83 410.21 1.60 -80.23 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.15 Total: 11.34 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: 7.72 Total: 5.69 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -8.25 Total: -129.82 kcal Atomic # 8 Polarization: -16.25 SS G_CDS: -0.05 Total: -16.30 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -81.83 1.60 -80.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317790428.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.002 kcal (2) G-P(sol) polarization free energy of solvation -81.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.228 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds